Diff of the two buildlogs: -- --- b1/build.log 2024-01-07 03:36:09.996738956 +0000 +++ b2/build.log 2024-01-07 04:57:25.946667012 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 7 21:11:58 -12 2025 -I: pbuilder-time-stamp: 1739005918 +I: Current time: Sun Jan 7 17:36:18 +14 2024 +I: pbuilder-time-stamp: 1704598578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -46,49 +46,81 @@ dpkg-source: info: applying tune_lmdb_defaults I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3679501/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 7 03:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='28d6aa6105f248e488efbdf68d423985' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3679501' - PS1='# ' - PS2='> ' + INVOCATION_ID=97f8ea5a84e943b4bdf4a4005283bdbc + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1228674 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h7tXVcsc/pbuilderrc_0d6U --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h7tXVcsc/b1 --logfile b1/build.log ncbi-blast+_2.12.0+ds-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h7tXVcsc/pbuilderrc_jDQG --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h7tXVcsc/b2 --logfile b2/build.log ncbi-blast+_2.12.0+ds-3.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash @@ -146,15 +178,15 @@ -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Jul 28 2023 run-parts + -rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Jan 7 03:36 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 23 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Jul 28 2023 tempfile + -rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server @@ -174,7 +206,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/3679501/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -305,7 +337,7 @@ Get: 73 http://deb.debian.org/debian bookworm/main amd64 libpcre3-dev amd64 2:8.39-15 [653 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 time amd64 1.9-0.2 [50.8 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] -Fetched 45.3 MB in 1s (88.6 MB/s) +Fetched 45.3 MB in 2s (23.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18148 files and directories currently installed.) @@ -622,7 +654,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-blast+_2.12.0+ds-3_source.changes +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-blast+_2.12.0+ds-3_source.changes dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.12.0+ds-3 dpkg-buildpackage: info: source distribution unstable @@ -654,78 +690,78 @@ done ) ; \ ) ; \ done -/bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found +/bin/sh: line 2: cd: c++/src/objects/CMakeLists.txt: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.in: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.sources: Not a directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.cmd: Not a directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.sh: Not a directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory make[1]: [debian/rules:148: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module @@ -5231,982 +5267,958 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds' cd c++/BUILD/build && \ - make -j16 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" + make -j15 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -/usr/bin/make -w -j16 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= +/usr/bin/make -w -j15 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[3]: warning: -j16 forced in submake: resetting jobserver mode. -cd corelib/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[3]: warning: -j15 forced in submake: resetting jobserver mode. +cd corelib/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd serial/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd util/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd serial/datatool/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd serial/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd serial/datatool/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/tables/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/tables/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -cd connect/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd connect/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -cd algo/blast/core/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/core/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -cd util/sequtil/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +cd util/sequtil/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/services/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/services/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd objmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +cd objmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +/usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. +cd objtools/logging/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/logging/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +cd objtools/readers/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd objtools/readers/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +cd objmgr/util/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -cd objmgr/util/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/seqmasks_io/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +cd objtools/seqmasks_io/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/profile/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' /usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -cd algo/blast/dbindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd util/profile/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd algo/dustmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' /usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/dbindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/winmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +cd algo/dustmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -cd objtools/alnmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd algo/blast/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +/usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd algo/winmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' /usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. -/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.logging.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd objtools/alnmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -cd util/compress/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. +/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/compress/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. -cd cgi/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.utrtprof.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd cgi/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. -cd html/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -cd objtools/align_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd html/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd objtools/align_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/blastinput/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +cd algo/blast/blastinput/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -cd objtools/eutils/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -/usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +cd objtools/eutils/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -cd connect/services/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +/usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -cd util/xregexp/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd connect/services/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/xregexp/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +/usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/edit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' NOTE: skipping project "xxconnect2" due to unmet requirements +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -cd objtools/edit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -/usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -cd objtools/cleanup/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/cleanup/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.eutils.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -cd objtools/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -/usr/bin/make[4] (Makefile.eutils.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -cd algo/blast/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xconnserv.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.proteinkmer.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.psg_client.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +NOTE: skipping project "psg_client" due to unmet requirements +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.proteinkmer.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/igblast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xconnserv.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -cd objtools/simple/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +cd algo/blast/igblast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +cd objtools/simple/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +/usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +/usr/bin/make[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -/usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/dustmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -cd app/dustmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Nothing to be done for 'sources'. -cd algo/segmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd app/segmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +cd algo/segmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd app/winmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/segmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -cd objmgr/split/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd app/winmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. +cd objmgr/split/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Nothing to be done for 'sources'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: Nothing to be done for 'sources'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/tables/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null -/usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd objtools/logging/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/profile/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=utrtprof UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd util/tables/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/logging/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null make[4]: Nothing to be done for 'sources'. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd util/profile/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=utrtprof UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.legacy_blast builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j16 --jobserver-auth=9,10 all +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +cd corelib/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.legacy_blast builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j15 --jobserver-auth=9,10 all make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker -w -j16 --jobserver-auth=9,10 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker -w -j15 --jobserver-auth=9,10 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -cd corelib/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables TMPL=tables -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables TMPL=tables -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging TMPL=logging -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/profile TMPL=utrtprof -w -j16 --jobserver-auth=7,8 all -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/profile TMPL=utrtprof -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging TMPL=logging -w -j15 --jobserver-auth=7,8 all +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd util/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/sequtil/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd html/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/legacy_blast.pl +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/imake[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/legacy_blast.pl -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/imake[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd corelib/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +cd util/xregexp/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.update_blastdb builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j15 --jobserver-auth=9,10 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.update_blastdb builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j16 --jobserver-auth=9,10 all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -cd util/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] - 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) - | ^~~~~~~~~~~~~~~~~~ -cd util/sequtil/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd html/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -cd corelib/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd util/xregexp/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -cd connect/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil TMPL=sequtil -w -j15 --jobserver-auth=7,8 all /usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil TMPL=sequtil -w -j16 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] + 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) + | ^~~~~~~~~~~~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j16 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j15 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +cd serial/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html TMPL=html -w -j15 --jobserver-auth=7,8 all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd util/compress/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. +/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) | ^~~~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/update_blastdb.pl -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html TMPL=html -w -j16 --jobserver-auth=7,8 all -cd serial/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -cd util/compress/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. -cd cgi/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd cgi/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j16 --jobserver-auth=9,10 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xconnect -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/.#lock-map. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/update_blastdb.pl +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial TMPL=serial -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/node.cpp -o node.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/html.cpp -o html.o @@ -6214,44 +6226,33 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/page.cpp -o page.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/pager.cpp -o pager.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/selection.cpp -o selection.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT /usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api TMPL=compress -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi TMPL=cgi -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/.#lock-map. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_types.c -o ncbi_types.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core.c -o ncbi_core.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.c -o ncbi_priv.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c -o ncbi_util.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/buildmake[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/get_species_taxids.sh -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd_stub.c:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +cd connect/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial TMPL=serial -w -j15 --jobserver-auth=7,8 all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c -o ncbi_socket.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c -o ncbi_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c -o ncbi_connection.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api TMPL=compress -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j15 --jobserver-auth=9,10 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi TMPL=cgi -w -j15 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/.#lock-map. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/hookdata.cpp -o hookdata.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/hookdatakey.cpp -o hookdatakey.o @@ -6259,7 +6260,10 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectinfo.cpp -o objectinfo.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectiter.cpp -o objectiter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectio.cpp -o objectio.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEF/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j16 --jobserver-auth=9,10 all +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFmake[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/compress.cpp -o compress.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/stream.cpp -o stream.o @@ -6267,14 +6271,8 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/zlib.cpp -o zlib.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-securitmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp -o cgiapp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgictx.cpp -o cgictx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp -o ncbires.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ref_args.cpp -o ref_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURmake[6]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-securit/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xconnect -w -j15 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/.#lock-map. ILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp -o typeref.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typemap.cpp -o typemap.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp -o stdtypes.o @@ -6282,7 +6280,74 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/continfo.cpp -o continfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blastIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blastmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp -o cgiapp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgictx.cpp -o cgictx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp -o ncbires.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ref_args.cpp -o ref_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURmake[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/get_species_taxids.sh +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +CE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_run.cpp -o cgi_run.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_util.cpp -o cgi_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_session.cpp -o cgi_session.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j15 --jobserver-auth=9,10 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_types.c -o ncbi_types.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core.c -o ncbi_core.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.c -o ncbi_priv.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c -o ncbi_util.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/buildmake[6]: warning: -j15 forced in submake: resetting jobserver mode. +/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c -o ncbi_socket.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c -o ncbi_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c -o ncbi_connection.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd_stub.c:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/cleanup-blastdb-volumes.py +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:76: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 48 | eNcbiCred_MbedTls = 0xC12CC114 + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] @@ -6322,36 +6387,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro 'METACONN_LOG' 92 | METACONN_LOG(33, connector->next ? eLOG_Error : eLOG_Critical, | ^~~~~~~~~~~~ -CE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_run.cpp -o cgi_run.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_util.cpp -o cgi_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_session.cpp -o cgi_session.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:76: +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 48 | eNcbiCred_MbedTls = 0xC12CC114 | ^~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 91 | fSERV_IncludePrivate = 0x80000000, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 91 | fSERV_IncludePrivate = 0x80000000, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ +/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c: In function 'CORE_SetLOGFILE_NAME_Ex': @@ -6362,7 +6426,15 @@ 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + 24make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o +/bin/rm -f libtables.so .libtables.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC raw_scoremat.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtables.so +/bin/ln -f .tables.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.tables.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +3 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ @@ -6370,31 +6442,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c:153:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 153 | CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, | ^~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 48 | eNcbiCred_MbedTls = 0xC12CC114 - | ^~~~~~~~~~ -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/cleanup-blastdb-volumes.py -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'x_ReInit': @@ -6440,6 +6487,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:311:21: note: in expansion of macro 'CONN_LOG' 311 | CONN_LOG(3, Close, | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6483,18 +6538,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:394:9: note: in expansion of macro 'CONN_LOG' 394 | CONN_LOG(5, Open, eLOG_Error, "Failed to open connection"); | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_CreateEx': -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o -/bin/rm -f libtables.so .libtables.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC raw_scoremat.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtables.so -/bin/ln -f .tables.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.tables.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6566,8 +6611,8 @@ 458 | CONN_NOT_NULL(1, ReInit); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 's_SendRcpt': + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'x_ServiceName': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6580,19 +6625,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:107:9: note: in expansion of macro 'CORE_LOGF_X' + 107 | CORE_LOGF_X(7, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:415:13: note: in expansion of macro 'SENDMAIL_RETURN' - 415 | SENDMAIL_RETURN(3, "Recipient address is too long"); - | ^~~~~~~~~~~~~~~ --D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c -o ncbi_service.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_base64.c -o ncbi_base64.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reprodmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:140:13: note: in expansion of macro 'CORE_LOGF_X' + 140 | CORE_LOGF_X(8, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetType': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6658,77 +6708,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:475:5: note: in expansion of macro 'CONN_NOT_NULL_EX' 475 | CONN_NOT_NULL_EX(7, Description, 0); | ^~~~~~~~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:418:13: note: in expansion of macro 'CORE_LOGF_X' - 418 | CORE_LOGF_X(1, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:426:13: note: in expansion of macro 'SENDMAIL_RETURN' - 426 | SENDMAIL_RETURN(4, write_error); - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'x_ServiceName': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:430:13: note: in expansion of macro 'SENDMAIL_RETURN2' - 430 | SENDMAIL_RETURN2(5, proto_error, buf); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:107:9: note: in expansion of macro 'CORE_LOGF_X' - 107 | CORE_LOGF_X(7, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'x_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6741,10 +6721,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:140:13: note: in expansion of macro 'CORE_LOGF_X' - 140 | CORE_LOGF_X(8, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:380:13: note: in expansion of macro 'CORE_LOGF_X' + 380 | CORE_LOGF_X(1, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 'CORE_SendMailEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6821,79 +6800,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:485:9: note: in expansion of macro 'SENDMAIL_RETURN' - 485 | SENDMAIL_RETURN(6, "SSendMailInfo inited improperly: Invalid magic"); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro 'SENDMAIL_RETURN' - 490 | SENDMAIL_RETURN(7, "At least one message recipient must be specified"); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:500:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 500 | SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:508:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 508 | SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); - | ^~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ @@ -6961,12 +6867,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:556:9: note: in expansion of macro 'CONN_LOG_EX' + 556 | CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:513:9: note: in expansion of macro 'SENDMAIL_RETURN' - 513 | SENDMAIL_RETURN(10, "Unable to get local host name"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetTimeout': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6979,12 +6886,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:518:9: note: in expansion of macro 'SENDMAIL_RETURN' - 518 | SENDMAIL_RETURN(11, "Write error in HELO command"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); + | ^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 's_SendRcpt': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6997,13 +6910,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 521 | SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'x_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:415:13: note: in expansion of macro 'SENDMAIL_RETURN' + 415 | SENDMAIL_RETURN(3, "Recipient address is too long"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7016,8 +6928,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:380:13: note: in expansion of macro 'CORE_LOGF_X' - 380 | CORE_LOGF_X(1, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:418:13: note: in expansion of macro 'CORE_LOGF_X' + 418 | CORE_LOGF_X(1, eLOG_Warning, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7031,12 +6943,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:526:9: note: in expansion of macro 'SENDMAIL_RETURN' - 526 | SENDMAIL_RETURN(13, "Write error in MAIL command"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' + 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7049,12 +6964,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro 'CONN_LOG_EX' + 580 | CONN_LOG_EX(11, GetTimeout, eLOG_Warning, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:529:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 529 | SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); - | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7070,8 +6985,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:556:9: note: in expansion of macro 'CONN_LOG_EX' - 556 | CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:595:9: note: in expansion of macro 'CONN_LOG_EX' + 595 | CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7088,32 +7003,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:550:9: note: in expansion of macro 'SENDMAIL_RETURN' - 550 | SENDMAIL_RETURN(15, "Write error in DATA command"); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetTimeout': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); - | ^~~~~~~~~~~~~~~~ -/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:426:13: note: in expansion of macro 'SENDMAIL_RETURN' + 426 | SENDMAIL_RETURN(4, write_error); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7129,9 +7021,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:552:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 552 | SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:430:13: note: in expansion of macro 'SENDMAIL_RETURN2' + 430 | SENDMAIL_RETURN2(5, proto_error, buf); + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 'CORE_SendMailEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7144,15 +7037,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' - 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:485:9: note: in expansion of macro 'SENDMAIL_RETURN' + 485 | SENDMAIL_RETURN(6, "SSendMailInfo inited improperly: Invalid magic"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7168,9 +7058,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:583:21: note: in expansion of macro 'SENDMAIL_RETURN' - 583 | SENDMAIL_RETURN(32, "Write error in sending Date"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro 'SENDMAIL_RETURN' + 490 | SENDMAIL_RETURN(7, "At least one message recipient must be specified"); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Wait': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7186,27 +7077,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:580:9: note: in expansion of macro 'CONN_LOG_EX' - 580 | CONN_LOG_EX(11, GetTimeout, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' + 611 | CONN_NOT_NULL(13, Wait); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:590:21: note: in expansion of macro 'SENDMAIL_RETURN' - 590 | SENDMAIL_RETURN(33, "Write error in sending From"); - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7222,9 +7101,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:595:9: note: in expansion of macro 'CONN_LOG_EX' - 595 | CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' + 611 | CONN_NOT_NULL(13, Wait); + | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': @@ -7249,12 +7134,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:598:17: note: in expansion of macro 'SENDMAIL_RETURN' - 598 | SENDMAIL_RETURN(17, "Write error in sending Subject"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:500:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 500 | SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); + | ^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:77: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_DoLog': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7267,12 +7156,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:530:9: note: in expansion of macro 'CORE_LOGF_X' + 530 | CORE_LOGF_X(112, level, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:605:17: note: in expansion of macro 'SENDMAIL_RETURN' - 605 | SENDMAIL_RETURN(18, "Write error in sending To"); - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7285,76 +7171,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:612:17: note: in expansion of macro 'SENDMAIL_RETURN' - 612 | SENDMAIL_RETURN(19, "Write error in sending Cc"); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:616:9: note: in expansion of macro 'CORE_LOG_X' - 616 | CORE_LOG_X(2, eLOG_Warning, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Wait': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' - 611 | CONN_NOT_NULL(13, Wait); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' - 611 | CONN_NOT_NULL(13, Wait); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:508:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 508 | SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7370,8 +7192,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:627:9: note: in expansion of macro 'SENDMAIL_RETURN' - 627 | SENDMAIL_RETURN(20, "Write error in sending mailer information"); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:513:9: note: in expansion of macro 'SENDMAIL_RETURN' + 513 | SENDMAIL_RETURN(10, "Unable to get local host name"); | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7379,18 +7201,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:655:17: note: in expansion of macro 'SENDMAIL_RETURN' - 655 | SENDMAIL_RETURN(21, "Write error while sending custom header"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:569:9: note: in expansion of macro 'CORE_DATAF_X' + 569 | CORE_DATAF_X(109, level, data, size, + | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7403,12 +7222,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:664:13: note: in expansion of macro 'SENDMAIL_RETURN2' - 664 | SENDMAIL_RETURN2(22, error, buffer); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:518:9: note: in expansion of macro 'SENDMAIL_RETURN' + 518 | SENDMAIL_RETURN(11, "Write error in HELO command"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7421,12 +7240,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:601:9: note: in expansion of macro 'CORE_LOGF_X' + 601 | CORE_LOGF_X(113, level, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:667:13: note: in expansion of macro 'SENDMAIL_RETURN' - 667 | SENDMAIL_RETURN(23, "Write error in finalizing custom header"); - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7470,25 +7286,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:680:9: note: in expansion of macro 'CONN_LOG' 680 | CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1944:9: note: in expansion of macro 'CORE_LOG_X' - 1944 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:115: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7501,12 +7298,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:609:9: note: in expansion of macro 'CORE_LOGF_X' + 609 | CORE_LOGF_X(1, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:676:17: note: in expansion of macro 'SENDMAIL_RETURN' - 676 | SENDMAIL_RETURN(24, "Write error in message body delimiter"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:902:32: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'FSSLSetup' {aka 'const struct SOCKSSL_struct * (*)(void)'} [-Wformat=] + 902 | sprintf(buf, "%p()", s_SSLSetup); + | ~^ ~~~~~~~~~~ + | | | + | | FSSLSetup {aka const struct SOCKSSL_struct * (*)(void)} + | void * /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7516,12 +7317,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:273:9: note: in expansion of macro 'CORE_LOGF_X' - 273 | CORE_LOGF_X(1, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:906:13: note: in expansion of macro 'CORE_LOGF' + 906 | CORE_LOGF(eLOG_Critical, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7531,12 +7332,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:295:13: note: in expansion of macro 'CORE_LOGF_X' - 295 | CORE_LOGF_X(2, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:914:13: note: in expansion of macro 'CORE_LOG' + 914 | CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not" + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7549,13 +7350,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:702:17: note: in expansion of macro 'SENDMAIL_RETURN' - 702 | SENDMAIL_RETURN(25, "Write error while sending message body"); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_AttachFast': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 521 | SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7568,9 +7368,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:319:9: note: in expansion of macro 'CORE_LOGF_X' - 319 | CORE_LOGF_X(3, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:526:9: note: in expansion of macro 'SENDMAIL_RETURN' + 526 | SENDMAIL_RETURN(13, "Write error in MAIL command"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7586,24 +7389,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:711:13: note: in expansion of macro 'SENDMAIL_RETURN2' - 711 | SENDMAIL_RETURN2(26, error, buffer); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:329:9: note: in expansion of macro 'CORE_LOGF_X' - 329 | CORE_LOGF_X(4, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:529:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 529 | SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7616,9 +7404,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1981:9: note: in expansion of macro 'CORE_LOGF_X' - 1981 | CORE_LOGF_X(3, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:550:9: note: in expansion of macro 'SENDMAIL_RETURN' + 550 | SENDMAIL_RETURN(15, "Write error in DATA command"); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7628,12 +7420,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2004:9: note: in expansion of macro 'CORE_LOGF_X' - 2004 | CORE_LOGF_X(4, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1944:9: note: in expansion of macro 'CORE_LOG_X' + 1944 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7692,122 +7484,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:715:13: note: in expansion of macro 'SENDMAIL_RETURN' - 715 | SENDMAIL_RETURN(27, "Write error while finalizing message body"); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:718:9: note: in expansion of macro 'SENDMAIL_RETURN' - 718 | SENDMAIL_RETURN(28, "Write error while finalizing message"); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:723:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 723 | SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:360:17: note: in expansion of macro 'CORE_LOGF_X' - 360 | CORE_LOGF_X(34, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Find': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:451:9: note: in expansion of macro 'CORE_LOGF_X' - 451 | CORE_LOGF_X(8, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2055:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2055 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2072:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2072 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ @@ -7820,31 +7496,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:762:5: note: in expansion of macro 'CONN_NOT_NULL' 762 | CONN_NOT_NULL(18, Write); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Pushback': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostname': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:797:5: note: in expansion of macro 'CONN_NOT_NULL' - 797 | CONN_NOT_NULL(19, Pushback); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 179 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1069:13: note: in expansion of macro 'CORE_LOG_ERRNO_EXX' + 1069 | CORE_LOG_ERRNO_EXX(103, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7857,12 +7524,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:726:9: note: in expansion of macro 'SENDMAIL_RETURN' - 726 | SENDMAIL_RETURN(30, "Write error in QUIT command"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1078:13: note: in expansion of macro 'CORE_LOGF_X' + 1078 | CORE_LOGF_X(104, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7878,13 +7542,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:728:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 728 | SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:552:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 552 | SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); | ^~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:77: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_DoLog': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7897,14 +7557,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:530:9: note: in expansion of macro 'CORE_LOGF_X' - 530 | CORE_LOGF_X(112, level, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Take': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:636:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] - 636 | return &b->head; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Alloc': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:583:21: note: in expansion of macro 'SENDMAIL_RETURN' + 583 | SENDMAIL_RETURN(32, "Write error in sending Date"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7914,28 +7572,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:649:9: note: in expansion of macro 'CORE_LOG_X' - 649 | CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:569:9: note: in expansion of macro 'CORE_DATAF_X' - 569 | CORE_DATAF_X(109, level, data, size, - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:590:21: note: in expansion of macro 'SENDMAIL_RETURN' + 590 | SENDMAIL_RETURN(33, "Write error in sending From"); + | ^~~~~~~~~~~~~~~ +-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c -o ncbi_service.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_base64.c -o ncbi_base64.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reprod/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -7947,8 +7599,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:655:9: note: in expansion of macro 'CORE_LOGF_X' - 655 | CORE_LOGF_X(7, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1981:9: note: in expansion of macro 'CORE_LOGF_X' + 1981 | CORE_LOGF_X(3, eLOG_Warning, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7962,10 +7614,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2119:9: note: in expansion of macro 'CORE_LOGF_X' - 2119 | CORE_LOGF_X(7, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2004:9: note: in expansion of macro 'CORE_LOGF_X' + 2004 | CORE_LOGF_X(4, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Pushback': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7981,8 +7633,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) @@ -7990,7 +7642,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:797:5: note: in expansion of macro 'CONN_NOT_NULL' 797 | CONN_NOT_NULL(19, Pushback); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Flush': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8006,54 +7657,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:817:5: note: in expansion of macro 'CONN_NOT_NULL' - 817 | CONN_NOT_NULL(20, Flush); - | ^~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2152:9: note: in expansion of macro 'CORE_LOG_X' - 2152 | CORE_LOG_X(9, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:797:5: note: in expansion of macro 'CONN_NOT_NULL' + 797 | CONN_NOT_NULL(19, Pushback); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2194:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2194 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8066,9 +7678,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:601:9: note: in expansion of macro 'CORE_LOGF_X' - 601 | CORE_LOGF_X(113, level, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:598:17: note: in expansion of macro 'SENDMAIL_RETURN' + 598 | SENDMAIL_RETURN(17, "Write error in sending Subject"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8081,9 +7696,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:702:13: note: in expansion of macro 'CORE_LOGF_X' - 702 | CORE_LOGF_X(9, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:605:17: note: in expansion of macro 'SENDMAIL_RETURN' + 605 | SENDMAIL_RETURN(18, "Write error in sending To"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8096,10 +7714,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:609:9: note: in expansion of macro 'CORE_LOGF_X' - 609 | CORE_LOGF_X(1, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:612:17: note: in expansion of macro 'SENDMAIL_RETURN' + 612 | SENDMAIL_RETURN(19, "Write error in sending Cc"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8112,8 +7732,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:826:9: note: in expansion of macro 'CORE_LOG_X' - 826 | CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:616:9: note: in expansion of macro 'CORE_LOG_X' + 616 | CORE_LOG_X(2, eLOG_Warning, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8127,213 +7747,29 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:817:5: note: in expansion of macro 'CONN_NOT_NULL' - 817 | CONN_NOT_NULL(20, Flush); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' - 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:832:9: note: in expansion of macro 'CONN_LOG' - 832 | CONN_LOG(21, Flush, status == eIO_Timeout ? eLOG_Trace : eLOG_Warning, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Read': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' - 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:856:9: note: in expansion of macro 'CONN_LOG' - 856 | CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:902:32: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'FSSLSetup' {aka 'const struct SOCKSSL_struct * (*)(void)'} [-Wformat=] - 902 | sprintf(buf, "%p()", s_SSLSetup); - | ~^ ~~~~~~~~~~ - | | | - | | FSSLSetup {aka const struct SOCKSSL_struct * (*)(void)} - | void * -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:832:9: note: in expansion of macro 'CORE_LOGF_X' - 832 | CORE_LOGF_X(11, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:627:9: note: in expansion of macro 'SENDMAIL_RETURN' + 627 | SENDMAIL_RETURN(20, "Write error in sending mailer information"); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:906:13: note: in expansion of macro 'CORE_LOGF' - 906 | CORE_LOGF(eLOG_Critical, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:845:13: note: in expansion of macro 'CORE_LOGF_X' - 845 | CORE_LOGF_X(13, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:914:13: note: in expansion of macro 'CORE_LOG' - 914 | CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not" - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:853:17: note: in expansion of macro 'CORE_LOGF_X' - 853 | CORE_LOGF_X(12, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:865:5: note: in expansion of macro 'CORE_LOGF_X' - 865 | CORE_LOGF_X(14, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:898:17: note: in expansion of macro 'CONN_LOG_EX' - 898 | CONN_LOG_EX(32, Read, eLOG_Critical, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' - 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:924:13: note: in expansion of macro 'CONN_LOG' - 924 | CONN_LOG(23, Read, level, "Unable to read data"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_FreeFast': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:877:9: note: in expansion of macro 'CORE_LOG_X' - 877 | CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1259:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 1259 | CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_getlocalhostaddress': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8346,25 +7782,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:883:9: note: in expansion of macro 'CORE_LOGF_X' - 883 | CORE_LOGF_X(16, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1298:9: note: in expansion of macro 'CORE_LOGF_X' + 1298 | CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:902:13: note: in expansion of macro 'CORE_LOGF_X' - 902 | CORE_LOGF_X(17, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostname': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8374,28 +7795,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 179 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1069:13: note: in expansion of macro 'CORE_LOG_ERRNO_EXX' - 1069 | CORE_LOG_ERRNO_EXX(103, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1078:13: note: in expansion of macro 'CORE_LOGF_X' - 1078 | CORE_LOGF_X(104, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2055:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2055 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Flush': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8417,8 +7823,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' - 971 | CONN_NOT_NULL(24, Read); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:817:5: note: in expansion of macro 'CONN_NOT_NULL' + 817 | CONN_NOT_NULL(20, Flush); | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8441,26 +7847,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' - 971 | CONN_NOT_NULL(24, Read); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:817:5: note: in expansion of macro 'CONN_NOT_NULL' + 817 | CONN_NOT_NULL(20, Flush); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1259:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 1259 | CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_getlocalhostaddress': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8473,9 +7862,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1298:9: note: in expansion of macro 'CORE_LOGF_X' - 1298 | CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:655:17: note: in expansion of macro 'SENDMAIL_RETURN' + 655 | SENDMAIL_RETURN(21, "Write error while sending custom header"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8488,65 +7880,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:913:13: note: in expansion of macro 'CORE_LOGF_X' - 913 | CORE_LOGF_X(18, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:920:13: note: in expansion of macro 'CORE_LOGF_X' - 920 | CORE_LOGF_X(19, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Trim': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:942:9: note: in expansion of macro 'CORE_LOGF_X' - 942 | CORE_LOGF_X(30, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' - 1020 | CONN_NOT_NULL(25, ReadLine); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:664:13: note: in expansion of macro 'SENDMAIL_RETURN2' + 664 | SENDMAIL_RETURN2(22, error, buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8559,19 +7898,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' - 1020 | CONN_NOT_NULL(25, ReadLine); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:667:13: note: in expansion of macro 'SENDMAIL_RETURN' + 667 | SENDMAIL_RETURN(23, "Write error in finalizing custom header"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8603,6 +7935,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1460:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' 1460 | CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8615,40 +7948,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:977:13: note: in expansion of macro 'CORE_LOGF_X' - 977 | CORE_LOGF_X(31, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1004:9: note: in expansion of macro 'CORE_LOGF_X' - 1004 | CORE_LOGF_X(32, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1494:9: note: in expansion of macro 'CORE_LOGF_X' + 1494 | CORE_LOGF_X(10, eLOG_Warning, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'x_HEAP_Walk': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1025:13: note: in expansion of macro 'CORE_LOGF_X' - 1025 | CORE_LOGF_X(28, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2072:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2072 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8661,13 +7978,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1067:17: note: in expansion of macro 'CONN_LOG_EX' - 1067 | CONN_LOG_EX(35, ReadLine, eLOG_Critical, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2119:9: note: in expansion of macro 'CORE_LOGF_X' + 2119 | CORE_LOGF_X(7, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8680,10 +7993,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1494:9: note: in expansion of macro 'CORE_LOGF_X' - 1494 | CORE_LOGF_X(10, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'x_TryLowerSockFileno': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:676:17: note: in expansion of macro 'SENDMAIL_RETURN' + 676 | SENDMAIL_RETURN(24, "Write error in message body delimiter"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8696,9 +8011,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1038:13: note: in expansion of macro 'CORE_LOGF_X' - 1038 | CORE_LOGF_X(26, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:702:17: note: in expansion of macro 'SENDMAIL_RETURN' + 702 | SENDMAIL_RETURN(25, "Write error while sending message body"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8711,9 +8029,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1041:13: note: in expansion of macro 'CORE_LOGF_X' - 1041 | CORE_LOGF_X(27, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:711:13: note: in expansion of macro 'SENDMAIL_RETURN2' + 711 | SENDMAIL_RETURN2(26, error, buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8726,10 +8047,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1056:9: note: in expansion of macro 'CORE_LOGF_X' - 1056 | CORE_LOGF_X(23, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:715:13: note: in expansion of macro 'SENDMAIL_RETURN' + 715 | SENDMAIL_RETURN(27, "Write error while finalizing message body"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8745,15 +8068,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' - 1086 | CONN_NOT_NULL(26, Status); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' + 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:832:9: note: in expansion of macro 'CONN_LOG' + 832 | CONN_LOG(21, Flush, status == eIO_Timeout ? eLOG_Trace : eLOG_Warning, + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 's_CONN_Read': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8769,15 +8090,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' - 1086 | CONN_NOT_NULL(26, Status); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' + 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:856:9: note: in expansion of macro 'CONN_LOG' + 856 | CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'x_TryLowerSockFileno': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8794,91 +8113,7 @@ 1628 | CORE_LOGF_X(111, eLOG_Trace, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Select_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1753:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1753 | CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1143:13: note: in expansion of macro 'CORE_LOGF_X' - 1143 | CORE_LOGF_X(21, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1158:17: note: in expansion of macro 'CORE_LOGF_X' - 1158 | CORE_LOGF_X(20, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1176:13: note: in expansion of macro 'CORE_LOGF_X' - 1176 | CORE_LOGF_X(22, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' - 1132 | CONN_NOT_NULL(27, Close); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8888,21 +8123,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' - 1132 | CONN_NOT_NULL(27, Close); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2152:9: note: in expansion of macro 'CORE_LOG_X' + 2152 | CORE_LOG_X(9, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8912,47 +8138,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1882:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 1882 | CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1187:17: note: in expansion of macro 'CORE_LOGF_X' - 1187 | CORE_LOGF_X(24, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Walk': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1224:9: note: in expansion of macro 'CORE_LOG_X' - 1224 | CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1229:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] - 1229 | return &s_HEAP_Walk(heap, ptr)->head; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2194:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2194 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8968,15 +8159,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' - 1152 | CONN_NOT_NULL(28, SetCallback); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:898:17: note: in expansion of macro 'CONN_LOG_EX' + 898 | CONN_LOG_EX(32, Read, eLOG_Critical, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8989,35 +8174,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' - 1152 | CONN_NOT_NULL(28, SetCallback); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Poll_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2026:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2026 | CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Next': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:718:9: note: in expansion of macro 'SENDMAIL_RETURN' + 718 | SENDMAIL_RETURN(28, "Write error while finalizing message"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9027,18 +8189,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1237:9: note: in expansion of macro 'CORE_LOG_X' - 1237 | CORE_LOG_X(34, eLOG_Warning, "Heap Next: NULL heap"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1242:65: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] - 1242 | for (n = s_HEAP_Walk(heap, ptr); n; n = s_HEAP_Walk(heap, &n->head)) { - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1246:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] - 1246 | return &n->head; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:723:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 723 | SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9051,13 +8210,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1158:9: note: in expansion of macro 'CONN_LOG_EX' - 1158 | CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:726:9: note: in expansion of macro 'SENDMAIL_RETURN' + 726 | SENDMAIL_RETURN(30, "Write error in QUIT command"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9073,16 +8231,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' - 1180 | CONN_NOT_NULL(36, GetSOCK); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Destroy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' + 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:924:13: note: in expansion of macro 'CONN_LOG' + 924 | CONN_LOG(23, Read, level, "Unable to read data"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9095,37 +8249,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1325:9: note: in expansion of macro 'CORE_LOGF_X' - 1325 | CORE_LOGF_X(33, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' - 1180 | CONN_NOT_NULL(36, GetSOCK); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:728:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 728 | SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); + | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp_cached.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -9243,31 +8374,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1753:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1753 | CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2171:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 2171 | CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1882:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 1882 | CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_IsConnected_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9277,30 +8405,47 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2747:13: note: in expansion of macro 'CORE_LOGF' - 2747 | CORE_LOGF(eLOG_Trace, - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' + 971 | CONN_NOT_NULL(24, Read); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2757:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 2757 | CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' + 971 | CONN_NOT_NULL(24, Read); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Poll_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9310,12 +8455,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2795:25: note: in expansion of macro 'CORE_LOGF' - 2795 | CORE_LOGF(eLOG_Trace, - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' + 1020 | CONN_NOT_NULL(25, ReadLine); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9328,10 +8482,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:172:13: note: in expansion of macro 'CORE_LOGF_X' - 172 | CORE_LOGF_X(33, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Recv': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' + 1020 | CONN_NOT_NULL(25, ReadLine); + | ^~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2026:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2026 | CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9344,11 +8530,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2951:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 2951 | CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2171:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 2171 | CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -9457,22 +8645,67 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Read_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1067:17: note: in expansion of macro 'CONN_LOG_EX' + 1067 | CONN_LOG_EX(35, ReadLine, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' + 1086 | CONN_NOT_NULL(26, Status); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3136:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 3136 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_run.cpp:35: @@ -9482,7 +8715,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' + 1086 | CONN_NOT_NULL(26, Status); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/sBUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' @@ -9503,7 +8760,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: notrc/connect/ncbi_connection.c: In function 'CONN_Close': +e: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' @@ -9584,7 +8842,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Send': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_IsConnected_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2747:13: note: in expansion of macro 'CORE_LOGF' + 2747 | CORE_LOGF(eLOG_Trace, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9597,32 +8870,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3487:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3487 | CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2757:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 2757 | CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WriteData': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3575:31: warning: ordered comparison of pointer with integer zero [-Wpedantic] - 3575 | n_written > 0 ? " [encrypt]" : 0); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WritePending': In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, @@ -9735,21 +8985,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3639:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3639 | CORE_LOGF_ERRNO_EXX(12, sock->log != eOff - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -9768,7 +9003,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9781,47 +9015,143 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3813:21: note: in expansion of macro 'CORE_LOGF_X' - 3813 | CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' + 1132 | CONN_NOT_NULL(27, Close); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3849:25: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3849 | CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' + 1132 | CONN_NOT_NULL(27, Close); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3900:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3900 | CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Close_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2795:25: note: in expansion of macro 'CORE_LOGF' + 2795 | CORE_LOGF(eLOG_Trace, + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' + 1152 | CONN_NOT_NULL(28, SetCallback); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' + 1152 | CONN_NOT_NULL(28, SetCallback); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1158:9: note: in expansion of macro 'CONN_LOG_EX' + 1158 | CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Recv': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9834,9 +9164,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3981:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3981 | CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2951:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 2951 | CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -9942,76 +9279,62 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' + 1180 | CONN_NOT_NULL(36, GetSOCK); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3997:21: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3997 | CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' + 1180 | CONN_NOT_NULL(36, GetSOCK); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4059:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4059 | CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4099:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4099 | CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -10117,22 +9440,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Connect_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4203:13: note: in expansion of macro 'CORE_LOGF_X' - 4203 | CORE_LOGF_X(142, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -10151,21 +9461,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4228:13: note: in expansion of macro 'CORE_LOGF_X' - 4228 | CORE_LOGF_X(22, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Read_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10175,16 +9486,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4254:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4254 | CORE_LOGF_ERRNO_EXX(23, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3136:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 3136 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp_cached.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -10293,6 +9604,23 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Send': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3487:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3487 | CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WriteData': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -10311,6 +9639,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3575:31: warning: ordered comparison of pointer with integer zero [-Wpedantic] + 3575 | n_written > 0 ? " [encrypt]" : 0); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WritePending': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10323,9 +9655,58 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4316:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4316 | CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3639:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3639 | CORE_LOGF_ERRNO_EXX(12, sock->log != eOff + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3813:21: note: in expansion of macro 'CORE_LOGF_X' + 3813 | CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:115: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:273:9: note: in expansion of macro 'CORE_LOGF_X' + 273 | CORE_LOGF_X(1, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:295:13: note: in expansion of macro 'CORE_LOGF_X' + 295 | CORE_LOGF_X(2, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10338,9 +9719,71 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4327:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4327 | CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3849:25: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3849 | CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3900:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3900 | CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_AttachFast': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:319:9: note: in expansion of macro 'CORE_LOGF_X' + 319 | CORE_LOGF_X(3, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:329:9: note: in expansion of macro 'CORE_LOGF_X' + 329 | CORE_LOGF_X(4, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:360:17: note: in expansion of macro 'CORE_LOGF_X' + 360 | CORE_LOGF_X(34, eLOG_Error, + | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/user_agent.cpp:34: @@ -10380,6 +9823,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Close_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3981:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3981 | CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Find': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:451:9: note: in expansion of macro 'CORE_LOGF_X' + 451 | CORE_LOGF_X(8, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Take': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:636:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] + 636 | return &b->head; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -10464,82 +9943,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4372:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4372 | CORE_LOGF_ERRNO_EXX(131, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4420:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4420 | CORE_LOGF_ERRNO_EXX(25, sock->log != eOff - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4462:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4462 | CORE_LOGF_ERRNO_EXX(26, sock->log != eOff - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Create': -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3997:21: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3997 | CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Alloc': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4570:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 4570 | CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:649:9: note: in expansion of macro 'CORE_LOG_X' + 649 | CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10552,30 +9974,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4632:9: note: in expansion of macro 'CORE_LOGF_X' - 4632 | CORE_LOGF_X(47, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:655:9: note: in expansion of macro 'CORE_LOGF_X' + 655 | CORE_LOGF_X(7, eLOG_Error, | ^~~~~~~~~~~ -ucible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c -o ncbi_lb.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4690:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4690 | CORE_LOGF_ERRNO_EXX(148, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10588,9 +9989,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4734:17: note: in expansion of macro 'CORE_LOGF_X' - 4734 | CORE_LOGF_X(48, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:702:13: note: in expansion of macro 'CORE_LOGF_X' + 702 | CORE_LOGF_X(9, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10603,8 +10004,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4783:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4783 | CORE_LOGF_ERRNO_EXX(50, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4059:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4059 | CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10615,30 +10016,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4800:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 4800 | CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4099:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4099 | CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4887:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4887 | CORE_LOGF_ERRNO_EXX(132, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Adjust': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:826:9: note: in expansion of macro 'CORE_LOG_X' + 826 | CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10651,9 +10050,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:580:17: note: in expansion of macro 'CORE_LOGF_X' - 580 | CORE_LOGF_X(2, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:832:9: note: in expansion of macro 'CORE_LOGF_X' + 832 | CORE_LOGF_X(11, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Connect_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10666,9 +10084,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:594:17: note: in expansion of macro 'CORE_LOGF_X' - 594 | CORE_LOGF_X(17, eLOG_Trace, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4203:13: note: in expansion of macro 'CORE_LOGF_X' + 4203 | CORE_LOGF_X(142, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10678,12 +10096,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4909:17: note: in expansion of macro 'CORE_LOGF' - 4909 | CORE_LOGF(eLOG_Trace, - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4228:13: note: in expansion of macro 'CORE_LOGF_X' + 4228 | CORE_LOGF_X(22, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10696,9 +10114,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:652:17: note: in expansion of macro 'CORE_LOGF_X' - 652 | CORE_LOGF_X(3, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:845:13: note: in expansion of macro 'CORE_LOGF_X' + 845 | CORE_LOGF_X(13, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10711,8 +10129,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:663:17: note: in expansion of macro 'CORE_LOGF_X' - 663 | CORE_LOGF_X(18, eLOG_Trace, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:853:17: note: in expansion of macro 'CORE_LOGF_X' + 853 | CORE_LOGF_X(12, eLOG_Warning, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10726,9 +10144,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:673:13: note: in expansion of macro 'CORE_LOGF_X' - 673 | CORE_LOGF_X(4, eLOG_Critical, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:865:5: note: in expansion of macro 'CORE_LOGF_X' + 865 | CORE_LOGF_X(14, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_FreeFast': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10738,28 +10157,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:695:9: note: in expansion of macro 'CORE_LOGF_X' - 695 | CORE_LOGF_X(1, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:877:9: note: in expansion of macro 'CORE_LOG_X' + 877 | CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4938:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4938 | CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Connect': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:883:9: note: in expansion of macro 'CORE_LOGF_X' + 883 | CORE_LOGF_X(16, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10772,8 +10193,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:812:13: note: in expansion of macro 'CORE_LOGF_X' - 812 | CORE_LOGF_X(5, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:172:13: note: in expansion of macro 'CORE_LOGF_X' + 172 | CORE_LOGF_X(33, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10781,45 +10202,45 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4949:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4949 | CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:902:13: note: in expansion of macro 'CORE_LOGF_X' + 902 | CORE_LOGF_X(17, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4972:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4972 | CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:913:13: note: in expansion of macro 'CORE_LOGF_X' + 913 | CORE_LOGF_X(18, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:979:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 979 | CORE_LOGF_ERRNO_X(20, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:920:13: note: in expansion of macro 'CORE_LOGF_X' + 920 | CORE_LOGF_X(19, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10832,10 +10253,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4990:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4990 | CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ConnectAndSend': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4254:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4254 | CORE_LOGF_ERRNO_EXX(23, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10845,29 +10265,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1203:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1203 | CORE_LOGF_ERRNO_X(6, uuu->reused ? eLOG_Trace : eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5064:13: note: in expansion of macro 'CORE_LOGF_X' - 5064 | CORE_LOGF_X(144, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkHead': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4316:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4316 | CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Trim': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10880,10 +10284,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1332:9: note: in expansion of macro 'CORE_LOGF_X' - 1332 | CORE_LOGF_X(23, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:942:9: note: in expansion of macro 'CORE_LOGF_X' + 942 | CORE_LOGF_X(30, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkTail': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10896,10 +10299,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1373:9: note: in expansion of macro 'CORE_LOGF_X' - 1373 | CORE_LOGF_X(25, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadData': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:977:13: note: in expansion of macro 'CORE_LOGF_X' + 977 | CORE_LOGF_X(31, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10909,12 +10311,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1415:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1415 | CORE_LOGF_ERRNO_X(24, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4327:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4327 | CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10924,28 +10326,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1439:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1439 | CORE_LOGF_ERRNO_X(25, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadHeader': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4372:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4372 | CORE_LOGF_ERRNO_EXX(131, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1516:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1516 | CORE_LOGF_ERRNO_X(7, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1004:9: note: in expansion of macro 'CORE_LOGF_X' + 1004 | CORE_LOGF_X(32, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'x_HEAP_Walk': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10958,8 +10360,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1554:13: note: in expansion of macro 'CORE_LOGF_X' - 1554 | CORE_LOGF_X(8, level, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1025:13: note: in expansion of macro 'CORE_LOGF_X' + 1025 | CORE_LOGF_X(28, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10967,38 +10369,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5106:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5106 | CORE_LOGF_ERRNO_EXX(34, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1623:9: note: in expansion of macro 'CORE_DATAF_X' - 1623 | CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, - | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1038:13: note: in expansion of macro 'CORE_LOGF_X' + 1038 | CORE_LOGF_X(26, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11011,9 +10390,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5152:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5152 | CORE_LOGF_ERRNO_EXX(35, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4420:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4420 | CORE_LOGF_ERRNO_EXX(25, sock->log != eOff + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11026,24 +10405,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro 'CORE_LOGF_X' - 1640 | CORE_LOGF_X(22, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1041:13: note: in expansion of macro 'CORE_LOGF_X' + 1041 | CORE_LOGF_X(27, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1659:17: note: in expansion of macro 'CORE_DATAF_X' - 1659 | CORE_DATAF_X(9, eLOG_Note, hdr, size, - | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1056:9: note: in expansion of macro 'CORE_LOGF_X' + 1056 | CORE_LOGF_X(23, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11056,9 +10435,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5207:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5207 | CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4462:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4462 | CORE_LOGF_ERRNO_EXX(26, sock->log != eOff + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11071,24 +10450,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1710:25: note: in expansion of macro 'CORE_LOGF_X' - 1710 | CORE_LOGF_X(10, eLOG_Critical, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1143:13: note: in expansion of macro 'CORE_LOGF_X' + 1143 | CORE_LOGF_X(21, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5228:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5228 | CORE_LOGF_ERRNO_EXX(150, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1158:17: note: in expansion of macro 'CORE_LOGF_X' + 1158 | CORE_LOGF_X(20, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11098,12 +10477,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1890:21: note: in expansion of macro 'CORE_LOG' - 1890 | CORE_LOG(eLOG_Warning, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1176:13: note: in expansion of macro 'CORE_LOGF_X' + 1176 | CORE_LOGF_X(22, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Create': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11116,39 +10496,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1913:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1913 | CORE_LOGF_ERRNO_X(11, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5298:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5298 | CORE_LOGF_ERRNO_EXX(37, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1960:13: note: in expansion of macro 'CORE_LOGF_X' - 1960 | CORE_LOGF_X(19, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4570:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 4570 | CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11161,9 +10511,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1965:13: note: in expansion of macro 'CORE_LOGF_X' - 1965 | CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1187:17: note: in expansion of macro 'CORE_LOGF_X' + 1187 | CORE_LOGF_X(24, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Walk': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11173,13 +10524,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5365:9: note: in expansion of macro 'CORE_LOGF_X' - 5365 | CORE_LOGF_X(115, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Accept': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1224:9: note: in expansion of macro 'CORE_LOG_X' + 1224 | CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1229:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] + 1229 | return &s_HEAP_Walk(heap, ptr)->head; + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Next': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11192,8 +10547,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5402:9: note: in expansion of macro 'CORE_LOGF_X' - 5402 | CORE_LOGF_X(39, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4632:9: note: in expansion of macro 'CORE_LOGF_X' + 4632 | CORE_LOGF_X(47, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11204,27 +10559,34 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1976:17: note: in expansion of macro 'CORE_LOGF_X' - 1976 | CORE_LOGF_X(13, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1237:9: note: in expansion of macro 'CORE_LOG_X' + 1237 | CORE_LOG_X(34, eLOG_Warning, "Heap Next: NULL heap"); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1242:65: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] + 1242 | for (n = s_HEAP_Walk(heap, ptr); n; n = s_HEAP_Walk(heap, &n->head)) { + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1246:12: warning: taking address of packed member of 'struct ' may result in an unaligned pointer value [-Waddress-of-packed-member] + 1246 | return &n->head; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Destroy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1984:17: note: in expansion of macro 'CORE_DATAF_X' - 1984 | CORE_DATAF_X(14, eLOG_Note, s, n, - | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4690:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4690 | CORE_LOGF_ERRNO_EXX(148, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11237,12 +10599,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1993:13: note: in expansion of macro 'CORE_LOGF_X' - 1993 | CORE_LOGF_X(15, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_OpenDispatcher': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1325:9: note: in expansion of macro 'CORE_LOGF_X' + 1325 | CORE_LOGF_X(33, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11255,30 +10614,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:102:9: note: in expansion of macro 'CORE_LOGF_X' - 102 | CORE_LOGF_X(5, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:179:49: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] - 179 | if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 - | ~^ ~~ - | | | - | int * unsigned int * - | %n -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:180:51: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] - 180 | || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 - | ~^ ~~ - | | | - | int * unsigned int * - | %n +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4734:17: note: in expansion of macro 'CORE_LOGF_X' + 4734 | CORE_LOGF_X(48, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11291,25 +10629,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5458:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5458 | CORE_LOGF_ERRNO_EXX(40, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4783:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4783 | CORE_LOGF_ERRNO_EXX(50, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Read': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2176:17: note: in expansion of macro 'CORE_LOGF_X' - 2176 | CORE_LOGF_X(16, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4800:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 4800 | CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11322,9 +10659,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5517:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5517 | CORE_LOGF_ERRNO_EXX(41, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4887:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4887 | CORE_LOGF_ERRNO_EXX(132, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11334,12 +10671,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2224:13: note: in expansion of macro 'CORE_LOGF_X' - 2224 | CORE_LOGF_X(21, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4909:17: note: in expansion of macro 'CORE_LOGF' + 4909 | CORE_LOGF(eLOG_Trace, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11352,56 +10689,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5574:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5574 | CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4938:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4938 | CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_VT_Write': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_Open': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:947:13: note: in expansion of macro 'CORE_LOGF_X' - 947 | CORE_LOGF_X(4, eLOG_Error, - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:973:13: note: in expansion of macro 'CORE_LOGF_X' - 973 | CORE_LOGF_X(9, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4949:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4949 | CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2481:9: note: in expansion of macro 'CORE_LOGF_X' - 2481 | CORE_LOGF_X(24, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4972:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4972 | CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11414,10 +10734,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5585:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5585 | CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4990:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4990 | CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_VT_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11430,8 +10750,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1166:13: note: in expansion of macro 'CORE_LOGF_X' - 1166 | CORE_LOGF_X(6, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5064:13: note: in expansion of macro 'CORE_LOGF_X' + 5064 | CORE_LOGF_X(144, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11439,15 +10759,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1178:9: note: in expansion of macro 'CORE_LOGF_X' - 1178 | CORE_LOGF_X(10, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5106:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5106 | CORE_LOGF_ERRNO_EXX(34, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11460,8 +10780,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5596:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5596 | CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5152:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5152 | CORE_LOGF_ERRNO_EXX(35, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11475,43 +10795,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5616:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5616 | CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5207:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5207 | CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5668:9: note: in expansion of macro 'CORE_LOGF_X' - 5668 | CORE_LOGF_X(44, eLOG_Note, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPCloseData': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5228:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5228 | CORE_LOGF_ERRNO_EXX(150, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:148:13: note: in expansion of macro 'CORE_LOGF_X' - 148 | CORE_LOGF_X(7, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5298:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5298 | CORE_LOGF_ERRNO_EXX(37, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11524,9 +10840,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:153:17: note: in expansion of macro 'CORE_LOGF_X' - 153 | CORE_LOGF_X(9, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5365:9: note: in expansion of macro 'CORE_LOGF_X' + 5365 | CORE_LOGF_X(115, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Accept': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11539,24 +10856,108 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:167:17: note: in expansion of macro 'CORE_LOGF_X' - 167 | CORE_LOGF_X(11, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5402:9: note: in expansion of macro 'CORE_LOGF_X' + 5402 | CORE_LOGF_X(39, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:171:17: note: in expansion of macro 'CORE_LOGF_X' - 171 | CORE_LOGF_X(8, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5458:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5458 | CORE_LOGF_ERRNO_EXX(40, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5517:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5517 | CORE_LOGF_ERRNO_EXX(41, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5574:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5574 | CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5585:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5585 | CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5596:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5596 | CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5616:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5616 | CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11569,9 +10970,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:188:13: note: in expansion of macro 'CORE_LOGF_X' - 188 | CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5668:9: note: in expansion of macro 'CORE_LOGF_X' + 5668 | CORE_LOGF_X(44, eLOG_Note, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11588,7 +10989,6 @@ 5694 | CORE_LOGF_ERRNO_EXX(45, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPReply': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11601,10 +11001,34 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:296:17: note: in expansion of macro 'CORE_LOGF_X' - 296 | CORE_LOGF_X(10, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5780:17: note: in expansion of macro 'CORE_LOGF_X' + 5780 | CORE_LOGF_X(20, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPCommandEx': +ucible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c -o ncbi_lb.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5829:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5829 | CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Adjust': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11617,8 +11041,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:379:17: note: in expansion of macro 'CORE_LOGF_X' - 379 | CORE_LOGF_X(4, eLOG_Trace, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:580:17: note: in expansion of macro 'CORE_LOGF_X' + 580 | CORE_LOGF_X(2, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11632,25 +11056,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5780:17: note: in expansion of macro 'CORE_LOGF_X' - 5780 | CORE_LOGF_X(20, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:594:17: note: in expansion of macro 'CORE_LOGF_X' + 594 | CORE_LOGF_X(17, eLOG_Trace, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPLogin': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5829:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5829 | CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:652:17: note: in expansion of macro 'CORE_LOGF_X' + 652 | CORE_LOGF_X(3, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11663,10 +11086,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:618:9: note: in expansion of macro 'CORE_LOGF_X' - 618 | CORE_LOGF_X(3, eLOG_Trace, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:663:17: note: in expansion of macro 'CORE_LOGF_X' + 663 | CORE_LOGF_X(18, eLOG_Trace, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:673:13: note: in expansion of macro 'CORE_LOGF_X' + 673 | CORE_LOGF_X(4, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:695:9: note: in expansion of macro 'CORE_LOGF_X' + 695 | CORE_LOGF_X(1, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11682,7 +11134,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5864:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 5864 | CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPPassive': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11695,9 +11146,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:976:9: note: in expansion of macro 'CORE_LOGF_X' - 976 | CORE_LOGF_X(2, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5881:9: note: in expansion of macro 'CORE_LOGF_X' + 5881 | CORE_LOGF_X(88, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Connect': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11710,9 +11162,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5881:9: note: in expansion of macro 'CORE_LOGF_X' - 5881 | CORE_LOGF_X(88, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:812:13: note: in expansion of macro 'CORE_LOGF_X' + 812 | CORE_LOGF_X(5, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:979:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 979 | CORE_LOGF_ERRNO_X(20, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11728,22 +11195,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5890:9: note: in expansion of macro 'CORE_LOGF_X' 5890 | CORE_LOGF_X(89, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ConnectAndSend': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1138:21: note: in expansion of macro 'CORE_LOGF_X' - 1138 | CORE_LOGF_X(5, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1203:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1203 | CORE_LOGF_ERRNO_X(6, uuu->reused ? eLOG_Trace : eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11775,6 +11242,54 @@ 5986 | CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkHead': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1332:9: note: in expansion of macro 'CORE_LOGF_X' + 1332 | CORE_LOGF_X(23, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkTail': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1373:9: note: in expansion of macro 'CORE_LOGF_X' + 1373 | CORE_LOGF_X(25, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadData': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1415:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1415 | CORE_LOGF_ERRNO_X(24, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11790,22 +11305,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6031:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 6031 | CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPPollCntl': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1668:13: note: in expansion of macro 'CORE_LOGF_X' - 1668 | CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1439:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1439 | CORE_LOGF_ERRNO_X(25, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11821,6 +11335,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6041:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 6041 | CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadHeader': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11833,10 +11348,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6053:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 6053 | CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1516:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1516 | CORE_LOGF_ERRNO_X(7, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11849,18 +11363,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1939:9: note: in expansion of macro 'CORE_LOGF_X' - 1939 | CORE_LOGF_X(13, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1554:13: note: in expansion of macro 'CORE_LOGF_X' + 1554 | CORE_LOGF_X(8, level, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1623:9: note: in expansion of macro 'CORE_DATAF_X' + 1623 | CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6053:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 6053 | CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11876,7 +11411,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6063:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' 6063 | CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Write': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11889,8 +11423,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2014:17: note: in expansion of macro 'CORE_LOGF_X' - 2014 | CORE_LOGF_X(6, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro 'CORE_LOGF_X' + 1640 | CORE_LOGF_X(22, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11898,6 +11432,36 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1659:17: note: in expansion of macro 'CORE_DATAF_X' + 1659 | CORE_DATAF_X(9, eLOG_Note, hdr, size, + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1710:25: note: in expansion of macro 'CORE_LOGF_X' + 1710 | CORE_LOGF_X(10, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ @@ -11908,6 +11472,29 @@ 6082 | CORE_LOGF_X(116, eLOG_Note, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1890:21: note: in expansion of macro 'CORE_LOG' + 1890 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11923,7 +11510,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6136:9: note: in expansion of macro 'CORE_LOGF_X' 6136 | CORE_LOGF_X(117, eLOG_Note, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_CreateConnector': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1913:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1913 | CORE_LOGF_ERRNO_X(11, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11933,12 +11534,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2328:9: note: in expansion of macro 'CORE_LOG' - 2328 | CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1960:13: note: in expansion of macro 'CORE_LOGF_X' + 1960 | CORE_LOGF_X(19, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11952,6 +11553,51 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1965:13: note: in expansion of macro 'CORE_LOGF_X' + 1965 | CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1976:17: note: in expansion of macro 'CORE_LOGF_X' + 1976 | CORE_LOGF_X(13, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1984:17: note: in expansion of macro 'CORE_DATAF_X' + 1984 | CORE_DATAF_X(14, eLOG_Note, s, n, + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6360:9: note: in expansion of macro 'CORE_LOGF_X' 6360 | CORE_LOGF_X(46, eLOG_Error, | ^~~~~~~~~~~ @@ -11968,6 +11614,37 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1993:13: note: in expansion of macro 'CORE_LOGF_X' + 1993 | CORE_LOGF_X(15, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Read': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2176:17: note: in expansion of macro 'CORE_LOGF_X' + 2176 | CORE_LOGF_X(16, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6528:9: note: in expansion of macro 'CORE_LOGF_X' 6528 | CORE_LOGF_X(52, eLOG_Error, | ^~~~~~~~~~~ @@ -11983,6 +11660,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2224:13: note: in expansion of macro 'CORE_LOGF_X' + 2224 | CORE_LOGF_X(21, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6538:9: note: in expansion of macro 'CORE_LOGF_X' 6538 | CORE_LOGF_X(53, eLOG_Error, | ^~~~~~~~~~~ @@ -12001,6 +11693,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6550:13: note: in expansion of macro 'CORE_LOGF_X' 6550 | CORE_LOGF_X(51, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_VT_Write': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2481:9: note: in expansion of macro 'CORE_LOGF_X' + 2481 | CORE_LOGF_X(24, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12017,15 +11725,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6588:9: note: in expansion of macro 'CORE_LOGF_X' 6588 | CORE_LOGF_X(54, eLOG_Error, | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12056,16 +11755,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6603:9: note: in expansion of macro 'CORE_LOGF_X' 6603 | CORE_LOGF_X(15, eLOG_Error, | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_OpenDispatcher': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:102:9: note: in expansion of macro 'CORE_LOGF_X' + 102 | CORE_LOGF_X(5, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbosp.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12081,6 +11789,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6749:9: note: in expansion of macro 'CORE_LOGF_X' 6749 | CORE_LOGF_X(56, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:179:49: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] + 179 | if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 + | ~^ ~~ + | | | + | int * unsigned int * + | %n +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:180:51: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] + 180 | || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 + | ~^ ~~ + | | | + | int * unsigned int * + | %n +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12111,6 +11840,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6791:13: note: in expansion of macro 'CORE_LOGF_X' 6791 | CORE_LOGF_X(58, eLOG_Warning, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12126,9 +11856,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6805:17: note: in expansion of macro 'CORE_LOGF_X' 6805 | CORE_LOGF_X(59, eLOG_Warning, | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12141,9 +11868,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:205:9: note: in expansion of macro 'CORE_LOGF_X' - 205 | CORE_LOGF_X(5, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:947:13: note: in expansion of macro 'CORE_LOGF_X' + 947 | CORE_LOGF_X(4, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:973:13: note: in expansion of macro 'CORE_LOGF_X' + 973 | CORE_LOGF_X(9, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12159,6 +11901,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6814:17: note: in expansion of macro 'CORE_LOGF_X' 6814 | CORE_LOGF_X(60, eLOG_Warning, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_VT_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1166:13: note: in expansion of macro 'CORE_LOGF_X' + 1166 | CORE_LOGF_X(6, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12189,6 +11947,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6834:9: note: in expansion of macro 'CORE_LOGF_X' 6834 | CORE_LOGF_X(62, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1178:9: note: in expansion of macro 'CORE_LOGF_X' + 1178 | CORE_LOGF_X(10, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12222,6 +11995,9 @@ 7010 | CORE_LOGF_X(64, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPCloseData': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12234,8 +12010,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7052:13: note: in expansion of macro 'CORE_LOGF_X' - 7052 | CORE_LOGF_X(65, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:148:13: note: in expansion of macro 'CORE_LOGF_X' + 148 | CORE_LOGF_X(7, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12249,13 +12025,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7062:9: note: in expansion of macro 'CORE_LOGF_X' - 7062 | CORE_LOGF_X(66, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringConcat': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:153:17: note: in expansion of macro 'CORE_LOGF_X' + 153 | CORE_LOGF_X(9, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12265,13 +12037,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:431:9: note: in expansion of macro 'CORE_LOG_X' - 431 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringNConcat': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:167:17: note: in expansion of macro 'CORE_LOGF_X' + 167 | CORE_LOGF_X(11, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12281,13 +12052,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:456:9: note: in expansion of macro 'CORE_LOG_X' - 456 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_RegGet': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7052:13: note: in expansion of macro 'CORE_LOGF_X' + 7052 | CORE_LOGF_X(65, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12297,12 +12067,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:480:9: note: in expansion of macro 'CORE_LOG_X' - 480 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:171:17: note: in expansion of macro 'CORE_LOGF_X' + 171 | CORE_LOGF_X(8, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12312,13 +12082,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:494:13: note: in expansion of macro 'CORE_LOG_X' - 494 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_GetLBOSAddressEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:188:13: note: in expansion of macro 'CORE_LOGF_X' + 188 | CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12328,12 +12097,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:562:5: note: in expansion of macro 'CORE_LOG' - 562 | CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7062:9: note: in expansion of macro 'CORE_LOGF_X' + 7062 | CORE_LOGF_X(66, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPReply': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12343,27 +12114,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:576:17: note: in expansion of macro 'CORE_LOG_X' - 576 | CORE_LOG_X(1, eLOG_Error, "Use of custom LBOS address " - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:296:17: note: in expansion of macro 'CORE_LOGF_X' + 296 | CORE_LOGF_X(10, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPCommandEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 163 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:583:17: note: in expansion of macro 'CORE_LOG_ERRNO_X' - 583 | CORE_LOG_ERRNO_X(1, eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:379:17: note: in expansion of macro 'CORE_LOGF_X' + 379 | CORE_LOGF_X(4, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12379,6 +12151,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7096:9: note: in expansion of macro 'CORE_LOGF_X' 7096 | CORE_LOGF_X(125, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPLogin': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12391,9 +12165,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:591:17: note: in expansion of macro 'CORE_LOGF_X' - 591 | CORE_LOGF_X(1, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:618:9: note: in expansion of macro 'CORE_LOGF_X' + 618 | CORE_LOGF_X(3, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12406,40 +12180,41 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:602:17: note: in expansion of macro 'CORE_LOGF_X' - 602 | CORE_LOGF_X(1, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ReadLbosresolver': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7176:9: note: in expansion of macro 'CORE_LOGF_X' + 7176 | CORE_LOGF_X(67, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:721:9: note: in expansion of macro 'CORE_LOGF_ERRNO' - 721 | CORE_LOGF_ERRNO(eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7233:17: note: in expansion of macro 'CORE_LOGF_X' + 7233 | CORE_LOGF_X(68, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:730:9: note: in expansion of macro 'CORE_LOGF_ERRNO' - 730 | CORE_LOGF_ERRNO(eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7260:13: note: in expansion of macro 'CORE_LOGF_X' + 7260 | CORE_LOGF_X(69, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPPassive': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12449,13 +12224,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro 'CORE_LOGF' - 739 | CORE_LOGF(eLOG_Warning, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConnectURL': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:976:9: note: in expansion of macro 'CORE_LOGF_X' + 976 | CORE_LOGF_X(2, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12465,12 +12239,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:823:5: note: in expansion of macro 'CORE_LOGF' - 823 | CORE_LOGF(eLOG_Trace, ("Parsing URL \"%s\"", url)); - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7270:9: note: in expansion of macro 'CORE_LOGF_X' + 7270 | CORE_LOGF_X(70, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12480,12 +12256,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:825:9: note: in expansion of macro 'CORE_LOG' - 825 | CORE_LOG(eLOG_Warning, "Cannot parse URL"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1138:21: note: in expansion of macro 'CORE_LOGF_X' + 1138 | CORE_LOGF_X(5, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12495,12 +12271,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:828:5: note: in expansion of macro 'CORE_LOGF' - 828 | CORE_LOGF(eLOG_Trace, ("Creating HTTP%s connector", - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7289:9: note: in expansion of macro 'CORE_LOGF_X' + 7289 | CORE_LOGF_X(71, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12510,12 +12286,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:835:9: note: in expansion of macro 'CORE_LOG' - 835 | CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7296:9: note: in expansion of macro 'CORE_LOGF_X' + 7296 | CORE_LOGF_X(72, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetOSHandleEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPPollCntl': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12525,13 +12321,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:838:5: note: in expansion of macro 'CORE_LOG' - 838 | CORE_LOG(eLOG_Trace, "Creating connection"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7443:9: note: in expansion of macro 'CORE_LOGF_X' + 7443 | CORE_LOGF_X(73, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12541,13 +12336,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:840:9: note: in expansion of macro 'CORE_LOG' - 840 | CORE_LOG(eLOG_Warning, "Cannot create connection"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_UrlReadAll': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1668:13: note: in expansion of macro 'CORE_LOGF_X' + 1668 | CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetCork': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12557,12 +12352,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:899:9: note: in expansion of macro 'CORE_LOG' - 899 | CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7505:9: note: in expansion of macro 'CORE_LOGF_X' + 7505 | CORE_LOGF_X(158, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12572,12 +12367,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:911:13: note: in expansion of macro 'CORE_LOGF' - 911 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7512:9: note: in expansion of macro 'CORE_LOGF_X' + 7512 | CORE_LOGF_X(159, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12590,8 +12386,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7176:9: note: in expansion of macro 'CORE_LOGF_X' - 7176 | CORE_LOGF_X(67, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1939:9: note: in expansion of macro 'CORE_LOGF_X' + 1939 | CORE_LOGF_X(13, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12599,15 +12395,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7525:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7525 | CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_DisableOSSendDelay': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Write': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:939:17: note: in expansion of macro 'CORE_LOG' - 939 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2014:17: note: in expansion of macro 'CORE_LOGF_X' + 2014 | CORE_LOGF_X(6, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12617,13 +12430,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:953:9: note: in expansion of macro 'CORE_LOG' - 953 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ResolveIPPort': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7547:9: note: in expansion of macro 'CORE_LOGF_X' + 7547 | CORE_LOGF_X(156, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12633,13 +12445,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:985:9: note: in expansion of macro 'CORE_LOG' - 985 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro 'CORE_LOGF_X' + 7554 | CORE_LOGF_X(157, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7567:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7567 | CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_CreateConnector': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12652,10 +12479,29 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1044:9: note: in expansion of macro 'CORE_LOG' - 1044 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2328:9: note: in expansion of macro 'CORE_LOG' + 2328 | CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_FillCandidates': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_CreateEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7618:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7618 | CORE_LOGF_ERRNO_EXX(76, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Bind': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12668,9 +12514,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro 'CORE_LOGF_X' - 1194 | CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7738:9: note: in expansion of macro 'CORE_LOGF_X' + 7738 | CORE_LOGF_X(79, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12683,9 +12529,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7233:17: note: in expansion of macro 'CORE_LOGF_X' - 7233 | CORE_LOGF_X(68, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7745:9: note: in expansion of macro 'CORE_LOGF_X' + 7745 | CORE_LOGF_X(78, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12698,8 +12544,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1200:9: note: in expansion of macro 'CORE_LOGF_X' - 1200 | CORE_LOGF_X(1, eLOG_Trace, ("No servers of \"%s\" found by LBOS", +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:205:9: note: in expansion of macro 'CORE_LOGF_X' + 205 | CORE_LOGF_X(5, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12707,15 +12553,46 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7763:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7763 | CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7779:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7779 | CORE_LOGF_ERRNO_EXX(114, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Connect': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1205:5: note: in expansion of macro 'CORE_LOGF_X' - 1205 | CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7808:9: note: in expansion of macro 'CORE_LOGF_X' + 7808 | CORE_LOGF_X(82, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12728,10 +12605,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1218:13: note: in expansion of macro 'CORE_LOGF_X' - 1218 | CORE_LOGF_X(1, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckAnnounceArgs': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7815:9: note: in expansion of macro 'CORE_LOGF_X' + 7815 | CORE_LOGF_X(81, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12741,12 +12617,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1248:9: note: in expansion of macro 'CORE_LOG' - 1248 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7834:9: note: in expansion of macro 'CORE_LOGF_X' + 7834 | CORE_LOGF_X(83, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12759,9 +12635,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7260:13: note: in expansion of macro 'CORE_LOGF_X' - 7260 | CORE_LOGF_X(69, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7847:9: note: in expansion of macro 'CORE_LOGF_X' + 7847 | CORE_LOGF_X(84, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7876:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7876 | CORE_LOGF_ERRNO_EXX(85, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12771,12 +12663,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1255:9: note: in expansion of macro 'CORE_LOG' - 1255 | CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7904:9: note: in expansion of macro 'CORE_LOGF_X' + 7904 | CORE_LOGF_X(96, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12786,12 +12678,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1265:17: note: in expansion of macro 'CORE_LOG' - 1265 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7911:9: note: in expansion of macro 'CORE_LOGF_X' + 7911 | CORE_LOGF_X(95, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_RecvMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12801,12 +12694,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1275:9: note: in expansion of macro 'CORE_LOG' - 1275 | CORE_LOG(eLOG_Critical, "Error with announcement, invalid port."); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7964:9: note: in expansion of macro 'CORE_LOGF_X' + 7964 | CORE_LOGF_X(93, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12816,12 +12709,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1279:9: note: in expansion of macro 'CORE_LOG' - 1279 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7971:9: note: in expansion of macro 'CORE_LOGF_X' + 7971 | CORE_LOGF_X(92, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SendMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12831,12 +12725,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1284:9: note: in expansion of macro 'CORE_LOG' - 1284 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8008:9: note: in expansion of macro 'CORE_LOGF_X' + 8008 | CORE_LOGF_X(87, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12846,13 +12740,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1289:9: note: in expansion of macro 'CORE_LOG' - 1289 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckDeannounceArgs': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8015:9: note: in expansion of macro 'CORE_LOGF_X' + 8015 | CORE_LOGF_X(86, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WipeMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12862,12 +12756,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro 'CORE_LOG' - 1303 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8047:9: note: in expansion of macro 'CORE_LOGF_X' + 8047 | CORE_LOGF_X(98, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12880,10 +12774,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7270:9: note: in expansion of macro 'CORE_LOGF_X' - 7270 | CORE_LOGF_X(70, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8054:9: note: in expansion of macro 'CORE_LOGF_X' + 8054 | CORE_LOGF_X(97, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12893,12 +12786,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1309:9: note: in expansion of macro 'CORE_LOG' - 1309 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8074:9: note: in expansion of macro 'CORE_LOGF_X' + 8074 | CORE_LOGF_X(99, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SetBroadcast': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12908,12 +12802,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1314:9: note: in expansion of macro 'CORE_LOG' - 1314 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8092:9: note: in expansion of macro 'CORE_LOGF_X' + 8092 | CORE_LOGF_X(101, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12923,13 +12817,44 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1319:9: note: in expansion of macro 'CORE_LOG' - 1319 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Replace0000WithIP': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8099:9: note: in expansion of macro 'CORE_LOGF_X' + 8099 | CORE_LOGF_X(100, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8119:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 8119 | CORE_LOGF_ERRNO_EXX(102, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetReuseAddress': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8285:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 8285 | CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetupSSLInternal': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12939,12 +12864,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1404:9: note: in expansion of macro 'CORE_LOG' - 1404 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8674:13: note: in expansion of macro 'CORE_LOGF' + 8674 | CORE_LOGF(eLOG_Critical, ("%s reset SSL while it is in use",verb)); + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbosp.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'SERV_SetImplicitServerType': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1115:9: warning: pointer 'svc' may be used after 'realloc' [-Wuse-after-free] + 1115 | free(svc); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1113:25: note: call to 'realloc' here + 1113 | if (!(buf = (char*) realloc(svc, len + sizeof(CONN_IMPLICIT_SERVER_TYPE) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1114 | + 2/*"=\0"*/) + strlen(typ))) { + | ~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringConcat': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12954,12 +12909,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7289:9: note: in expansion of macro 'CORE_LOGF_X' - 7289 | CORE_LOGF_X(71, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:431:9: note: in expansion of macro 'CORE_LOG_X' + 431 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringNConcat': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12969,12 +12925,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1412:9: note: in expansion of macro 'CORE_LOG' - 1412 | CORE_LOG(eLOG_Warning, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:456:9: note: in expansion of macro 'CORE_LOG_X' + 456 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_RegGet': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12984,13 +12941,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1419:9: note: in expansion of macro 'CORE_LOG' - 1419 | CORE_LOG(eLOG_Warning, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConstructData': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:480:9: note: in expansion of macro 'CORE_LOG_X' + 480 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13003,9 +12959,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1563:9: note: in expansion of macro 'CORE_LOG_X' - 1563 | CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:494:13: note: in expansion of macro 'CORE_LOG_X' + 494 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_GetLBOSAddressEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13015,13 +12972,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7296:9: note: in expansion of macro 'CORE_LOGF_X' - 7296 | CORE_LOGF_X(72, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Initialize': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:562:5: note: in expansion of macro 'CORE_LOG' + 562 | CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13034,9 +12990,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1638:9: note: in expansion of macro 'CORE_LOG_X' - 1638 | CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:576:17: note: in expansion of macro 'CORE_LOG_X' + 576 | CORE_LOG_X(1, eLOG_Error, "Use of custom LBOS address " + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 163 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:583:17: note: in expansion of macro 'CORE_LOG_ERRNO_X' + 583 | CORE_LOG_ERRNO_X(1, eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13049,9 +13020,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1640:9: note: in expansion of macro 'CORE_LOGF_X' - 1640 | CORE_LOGF_X(1, eLOG_Trace, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:591:17: note: in expansion of macro 'CORE_LOGF_X' + 591 | CORE_LOGF_X(1, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13064,10 +13035,40 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1654:9: note: in expansion of macro 'CORE_LOGF_X' - 1654 | CORE_LOGF_X(1, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ParseHeader': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:602:17: note: in expansion of macro 'CORE_LOGF_X' + 602 | CORE_LOGF_X(1, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ReadLbosresolver': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:721:9: note: in expansion of macro 'CORE_LOGF_ERRNO' + 721 | CORE_LOGF_ERRNO(eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:730:9: note: in expansion of macro 'CORE_LOGF_ERRNO' + 730 | CORE_LOGF_ERRNO(eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13080,10 +13081,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1702:9: note: in expansion of macro 'CORE_LOGF' - 1702 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro 'CORE_LOGF' + 739 | CORE_LOGF(eLOG_Warning, | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Reset': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConnectURL': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13093,13 +13094,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1765:17: note: in expansion of macro 'CORE_LOG' - 1765 | CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'SERV_LBOS_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:823:5: note: in expansion of macro 'CORE_LOGF' + 823 | CORE_LOGF(eLOG_Trace, ("Parsing URL \"%s\"", url)); + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13112,9 +13112,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1868:5: note: in expansion of macro 'CORE_LOG' - 1868 | CORE_LOG(eLOG_Error, "LBOS is deprecated, consider using LBSMD instead."); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:825:9: note: in expansion of macro 'CORE_LOG' + 825 | CORE_LOG(eLOG_Warning, "Cannot parse URL"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:828:5: note: in expansion of macro 'CORE_LOGF' + 828 | CORE_LOGF(eLOG_Trace, ("Creating HTTP%s connector", + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13127,8 +13142,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1880:9: note: in expansion of macro 'CORE_LOG' - 1880 | CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:835:9: note: in expansion of macro 'CORE_LOG' + 835 | CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13142,10 +13157,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1888:9: note: in expansion of macro 'CORE_LOG' - 1888 | CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetOSHandleEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:838:5: note: in expansion of macro 'CORE_LOG' + 838 | CORE_LOG(eLOG_Trace, "Creating connection"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13158,9 +13172,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1903:13: note: in expansion of macro 'CORE_LOG' - 1903 | CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:840:9: note: in expansion of macro 'CORE_LOG' + 840 | CORE_LOG(eLOG_Warning, "Cannot create connection"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_UrlReadAll': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13173,8 +13188,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1918:9: note: in expansion of macro 'CORE_LOG' - 1918 | CORE_LOG(eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:899:9: note: in expansion of macro 'CORE_LOG' + 899 | CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13185,12 +13200,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7443:9: note: in expansion of macro 'CORE_LOGF_X' - 7443 | CORE_LOGF_X(73, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:911:13: note: in expansion of macro 'CORE_LOGF' + 911 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_SetEndpoint': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13203,10 +13222,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1932:9: note: in expansion of macro 'CORE_LOG' - 1932 | CORE_LOG(eLOG_Critical, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Announce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:939:17: note: in expansion of macro 'CORE_LOG' + 939 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13219,10 +13237,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2047:9: note: in expansion of macro 'CORE_LOG' - 2047 | CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:953:9: note: in expansion of macro 'CORE_LOG' + 953 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetCork': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ResolveIPPort': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13232,12 +13250,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7505:9: note: in expansion of macro 'CORE_LOGF_X' - 7505 | CORE_LOGF_X(158, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:985:9: note: in expansion of macro 'CORE_LOG' + 985 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13250,8 +13268,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7512:9: note: in expansion of macro 'CORE_LOGF_X' - 7512 | CORE_LOGF_X(159, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:203:9: note: in expansion of macro 'CORE_LOGF_X' + 203 | CORE_LOGF_X(eLSub_BadData, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13262,12 +13280,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2052:9: note: in expansion of macro 'CORE_LOGF' - 2052 | CORE_LOGF(eLOG_Warning, ("Announce failed. " - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:210:13: note: in expansion of macro 'CORE_LOG_X' + 210 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13277,12 +13295,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2061:13: note: in expansion of macro 'CORE_LOG' - 2061 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:221:13: note: in expansion of macro 'CORE_LOG_X' + 221 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13292,12 +13310,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2071:13: note: in expansion of macro 'CORE_LOG' - 2071 | CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:232:13: note: in expansion of macro 'CORE_LOG_X' + 232 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNetInfo': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13307,13 +13326,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2084:9: note: in expansion of macro 'CORE_LOGF' - 2084 | CORE_LOGF(eLOG_Warning, ("Announce failed. " - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Announce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:271:17: note: in expansion of macro 'CORE_LOG_X' + 271 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13326,25 +13344,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2150:13: note: in expansion of macro 'CORE_LOG_X' - 2150 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_AnnounceFromRegistry': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:278:9: note: in expansion of macro 'CORE_LOG_X' + 278 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromRegistry': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7525:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7525 | CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:301:9: note: in expansion of macro 'CORE_LOG_X' + 301 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13354,20 +13372,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2219:13: note: in expansion of macro 'CORE_LOGF_X' - 2219 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_DisableOSSendDelay': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2226:53: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] - 2226 | if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || - | ~^ ~~~~~ - | | | - | | unsigned int * - | int * - | %d +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:310:9: note: in expansion of macro 'CORE_LOG_X' + 310 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13377,13 +13387,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7547:9: note: in expansion of macro 'CORE_LOGF_X' - 7547 | CORE_LOGF_X(156, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Deannounce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:319:9: note: in expansion of macro 'CORE_LOG_X' + 319 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13396,10 +13405,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2341:13: note: in expansion of macro 'CORE_LOG_X' - 2341 | CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_DeannounceAll': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:328:9: note: in expansion of macro 'CORE_LOG_X' + 328 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13409,13 +13417,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1044:9: note: in expansion of macro 'CORE_LOG' + 1044 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_FillCandidates': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro 'CORE_LOGF_X' + 1194 | CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2399:9: note: in expansion of macro 'CORE_LOG_X' - 2399 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckConfArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13428,8 +13451,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2451:9: note: in expansion of macro 'CORE_LOG_X' - 2451 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:337:9: note: in expansion of macro 'CORE_LOG_X' + 337 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13440,12 +13463,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2458:13: note: in expansion of macro 'CORE_LOGF_X' - 2458 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:350:13: note: in expansion of macro 'CORE_LOG_X' + 350 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13455,13 +13478,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro 'CORE_LOGF_X' - 7554 | CORE_LOGF_X(157, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_ServiceVersionSet': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:356:9: note: in expansion of macro 'CORE_LOG_X' + 356 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNamerd': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13474,8 +13497,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2550:9: note: in expansion of macro 'CORE_LOG_X' - 2550 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:381:9: note: in expansion of macro 'CORE_LOG_X' + 381 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13483,32 +13506,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7567:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7567 | CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_CreateEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:390:9: note: in expansion of macro 'CORE_LOG_X' + 390 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7618:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7618 | CORE_LOGF_ERRNO_EXX(76, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Bind': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1200:9: note: in expansion of macro 'CORE_LOGF_X' + 1200 | CORE_LOGF_X(1, eLOG_Trace, ("No servers of \"%s\" found by LBOS", + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13521,9 +13542,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7738:9: note: in expansion of macro 'CORE_LOGF_X' - 7738 | CORE_LOGF_X(79, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1205:5: note: in expansion of macro 'CORE_LOGF_X' + 1205 | CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13536,40 +13557,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7745:9: note: in expansion of macro 'CORE_LOGF_X' - 7745 | CORE_LOGF_X(78, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1218:13: note: in expansion of macro 'CORE_LOGF_X' + 1218 | CORE_LOGF_X(1, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7763:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7763 | CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:401:9: note: in expansion of macro 'CORE_LOG_X' + 401 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7779:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7779 | CORE_LOGF_ERRNO_EXX(114, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Connect': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:410:9: note: in expansion of macro 'CORE_LOG_X' + 410 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13579,12 +13599,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7808:9: note: in expansion of macro 'CORE_LOGF_X' - 7808 | CORE_LOGF_X(82, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:418:9: note: in expansion of macro 'CORE_LOG_X' + 418 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13594,12 +13614,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7815:9: note: in expansion of macro 'CORE_LOGF_X' - 7815 | CORE_LOGF_X(81, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:428:9: note: in expansion of macro 'CORE_LOG_X' + 428 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_Resolve': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13612,9 +13633,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7834:9: note: in expansion of macro 'CORE_LOGF_X' - 7834 | CORE_LOGF_X(83, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:470:9: note: in expansion of macro 'CORE_LOGF_X' + 470 | CORE_LOGF_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckAnnounceArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13624,35 +13646,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7847:9: note: in expansion of macro 'CORE_LOGF_X' - 7847 | CORE_LOGF_X(84, eLOG_Error, - | ^~~~~~~~~~~ -.c -o ncbi_ftp_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_version.c -o ncbi_version.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c -o ncbi_local.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1248:9: note: in expansion of macro 'CORE_LOG' + 1248 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7876:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7876 | CORE_LOGF_ERRNO_EXX(85, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1255:9: note: in expansion of macro 'CORE_LOG' + 1255 | CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13662,12 +13676,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7904:9: note: in expansion of macro 'CORE_LOGF_X' - 7904 | CORE_LOGF_X(96, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1265:17: note: in expansion of macro 'CORE_LOG' + 1265 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13677,13 +13691,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7911:9: note: in expansion of macro 'CORE_LOGF_X' - 7911 | CORE_LOGF_X(95, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_RecvMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1275:9: note: in expansion of macro 'CORE_LOG' + 1275 | CORE_LOG(eLOG_Critical, "Error with announcement, invalid port."); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13693,12 +13706,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7964:9: note: in expansion of macro 'CORE_LOGF_X' - 7964 | CORE_LOGF_X(93, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1279:9: note: in expansion of macro 'CORE_LOG' + 1279 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13708,13 +13721,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7971:9: note: in expansion of macro 'CORE_LOGF_X' - 7971 | CORE_LOGF_X(92, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SendMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1284:9: note: in expansion of macro 'CORE_LOG' + 1284 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13724,12 +13736,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8008:9: note: in expansion of macro 'CORE_LOGF_X' - 8008 | CORE_LOGF_X(87, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1289:9: note: in expansion of macro 'CORE_LOG' + 1289 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13739,13 +13751,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8015:9: note: in expansion of macro 'CORE_LOGF_X' - 8015 | CORE_LOGF_X(86, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WipeMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:496:9: note: in expansion of macro 'CORE_LOG_X' + 496 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13758,9 +13769,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8047:9: note: in expansion of macro 'CORE_LOGF_X' - 8047 | CORE_LOGF_X(98, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:509:9: note: in expansion of macro 'CORE_LOGF_X' + 509 | CORE_LOGF_X(eLSub_BadData, eLOG_Warning, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_GetNextInfo': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13770,21 +13782,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8054:9: note: in expansion of macro 'CORE_LOGF_X' - 8054 | CORE_LOGF_X(97, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:532:9: note: in expansion of macro 'CORE_LOG_X' + 532 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13794,13 +13797,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8074:9: note: in expansion of macro 'CORE_LOGF_X' - 8074 | CORE_LOGF_X(99, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SetBroadcast': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:538:9: note: in expansion of macro 'CORE_LOG_X' + 538 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13810,12 +13812,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8092:9: note: in expansion of macro 'CORE_LOGF_X' - 8092 | CORE_LOGF_X(101, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:563:13: note: in expansion of macro 'CORE_LOG_X' + 563 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 'LINKERD_GetHttpProxy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13825,56 +13828,43 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8099:9: note: in expansion of macro 'CORE_LOGF_X' - 8099 | CORE_LOGF_X(100, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:626:9: note: in expansion of macro 'CORE_LOG_X' + 626 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8119:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 8119 | CORE_LOGF_ERRNO_EXX(102, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetReuseAddress': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:632:9: note: in expansion of macro 'CORE_LOG_X' + 632 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8285:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 8285 | CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_SetEndpoint': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:638:9: note: in expansion of macro 'CORE_LOG_X' + 638 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckDeannounceArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13884,12 +13874,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:203:9: note: in expansion of macro 'CORE_LOGF_X' - 203 | CORE_LOGF_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro 'CORE_LOG' + 1303 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13899,12 +13889,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:210:13: note: in expansion of macro 'CORE_LOG_X' - 210 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1309:9: note: in expansion of macro 'CORE_LOG' + 1309 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13914,12 +13904,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:221:13: note: in expansion of macro 'CORE_LOG_X' - 221 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1314:9: note: in expansion of macro 'CORE_LOG' + 1314 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13929,13 +13919,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:232:13: note: in expansion of macro 'CORE_LOG_X' - 232 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNetInfo': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1319:9: note: in expansion of macro 'CORE_LOG' + 1319 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Replace0000WithIP': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13945,12 +13935,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:271:17: note: in expansion of macro 'CORE_LOG_X' - 271 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1404:9: note: in expansion of macro 'CORE_LOG' + 1404 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1412:9: note: in expansion of macro 'CORE_LOG' + 1412 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13963,10 +13968,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:278:9: note: in expansion of macro 'CORE_LOG_X' - 278 | CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:644:9: note: in expansion of macro 'CORE_LOG_X' + 644 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetupSSLInternal': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13976,13 +13980,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8674:13: note: in expansion of macro 'CORE_LOGF' - 8674 | CORE_LOGF(eLOG_Critical, ("%s reset SSL while it is in use",verb)); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromRegistry': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:653:5: note: in expansion of macro 'CORE_LOGF_X' + 653 | CORE_LOGF_X(eLSub_Message, eLOG_Info, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 'SERV_LINKERD_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13995,9 +13999,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:301:9: note: in expansion of macro 'CORE_LOG_X' - 301 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:671:13: note: in expansion of macro 'CORE_LOG_X' + 671 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14010,9 +14014,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:310:9: note: in expansion of macro 'CORE_LOG_X' - 310 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:676:13: note: in expansion of macro 'CORE_LOG_X' + 676 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14025,9 +14029,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:319:9: note: in expansion of macro 'CORE_LOG_X' - 319 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:684:13: note: in expansion of macro 'CORE_LOG_X' + 684 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14037,12 +14041,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:328:9: note: in expansion of macro 'CORE_LOG_X' - 328 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1419:9: note: in expansion of macro 'CORE_LOG' + 1419 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConstructData': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14055,9 +14060,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:337:9: note: in expansion of macro 'CORE_LOG_X' - 337 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1563:9: note: in expansion of macro 'CORE_LOG_X' + 1563 | CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Initialize': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14067,12 +14073,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:350:13: note: in expansion of macro 'CORE_LOG_X' - 350 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:695:13: note: in expansion of macro 'CORE_LOGF_X' + 695 | CORE_LOGF_X(eLSub_Logic, eLOG_Critical, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14082,13 +14088,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:356:9: note: in expansion of macro 'CORE_LOG_X' - 356 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNamerd': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:702:13: note: in expansion of macro 'CORE_LOGF_X' + 702 | CORE_LOGF_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14101,9 +14106,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:381:9: note: in expansion of macro 'CORE_LOG_X' - 381 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:710:13: note: in expansion of macro 'CORE_LOG_X' + 710 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14116,10 +14121,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:390:9: note: in expansion of macro 'CORE_LOG_X' - 390 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:720:13: note: in expansion of macro 'CORE_LOG_X' + 720 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +.c -o ncbi_ftp_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_version.c -o ncbi_version.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c -o ncbi_local.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -14131,9 +14143,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:401:9: note: in expansion of macro 'CORE_LOG_X' - 401 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:728:13: note: in expansion of macro 'CORE_LOG_X' + 728 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, "Couldn't clone net_info."); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14146,8 +14158,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:410:9: note: in expansion of macro 'CORE_LOG_X' - 410 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:737:9: note: in expansion of macro 'CORE_LOG_X' + 737 | CORE_LOG_X(eLSub_BadData, eLOG_Error, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14161,8 +14173,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:418:9: note: in expansion of macro 'CORE_LOG_X' - 418 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:745:9: note: in expansion of macro 'CORE_LOG_X' + 745 | CORE_LOG_X(eLSub_BadData, eLOG_Error, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14176,10 +14188,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:428:9: note: in expansion of macro 'CORE_LOG_X' - 428 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_Resolve': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:754:13: note: in expansion of macro 'CORE_LOG_X' + 754 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14189,12 +14200,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:470:9: note: in expansion of macro 'CORE_LOGF_X' - 470 | CORE_LOGF_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:765:13: note: in expansion of macro 'CORE_LOG_X' + 765 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14207,8 +14218,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:496:9: note: in expansion of macro 'CORE_LOG_X' - 496 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1638:9: note: in expansion of macro 'CORE_LOG_X' + 1638 | CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14222,10 +14233,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:509:9: note: in expansion of macro 'CORE_LOGF_X' - 509 | CORE_LOGF_X(eLSub_BadData, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1640:9: note: in expansion of macro 'CORE_LOGF_X' + 1640 | CORE_LOGF_X(1, eLOG_Trace, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_GetNextInfo': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14235,12 +14245,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:532:9: note: in expansion of macro 'CORE_LOG_X' - 532 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1654:9: note: in expansion of macro 'CORE_LOGF_X' + 1654 | CORE_LOGF_X(1, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14253,8 +14263,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:538:9: note: in expansion of macro 'CORE_LOG_X' - 538 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:775:9: note: in expansion of macro 'CORE_LOG_X' + 775 | CORE_LOG_X(eLSub_BadData, eLOG_Error, "No endpoint data found."); | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14268,10 +14278,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:563:13: note: in expansion of macro 'CORE_LOG_X' - 563 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 'LINKERD_GetHttpProxy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:795:17: note: in expansion of macro 'CORE_LOG_X' + 795 | CORE_LOG_X(eLSub_Message, eLOG_Info, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14284,9 +14293,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:626:9: note: in expansion of macro 'CORE_LOG_X' - 626 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:799:17: note: in expansion of macro 'CORE_LOG_X' + 799 | CORE_LOG_X(eLSub_Message, eLOG_Info, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14299,9 +14308,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:632:9: note: in expansion of macro 'CORE_LOG_X' - 632 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:805:17: note: in expansion of macro 'CORE_LOG_X' + 805 | CORE_LOG_X(eLSub_Message, eLOG_Info, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ParseHeader': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14311,12 +14321,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:638:9: note: in expansion of macro 'CORE_LOG_X' - 638 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1702:9: note: in expansion of macro 'CORE_LOGF' + 1702 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Reset': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1765:17: note: in expansion of macro 'CORE_LOG' + 1765 | CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14329,9 +14355,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:644:9: note: in expansion of macro 'CORE_LOG_X' - 644 | CORE_LOG_X(eLSub_BadData, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:807:17: note: in expansion of macro 'CORE_LOG_X' + 807 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14344,10 +14370,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:653:5: note: in expansion of macro 'CORE_LOGF_X' - 653 | CORE_LOGF_X(eLSub_Message, eLOG_Info, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 'SERV_LINKERD_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:819:13: note: in expansion of macro 'CORE_LOGF_X' + 819 | CORE_LOGF_X(eLSub_Logic, eLOG_Critical, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14360,9 +14385,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:671:13: note: in expansion of macro 'CORE_LOG_X' - 671 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:826:9: note: in expansion of macro 'CORE_LOG_X' + 826 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, "Unable to resolve endpoint."); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'SERV_LBOS_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14372,16 +14398,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:676:13: note: in expansion of macro 'CORE_LOG_X' - 676 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorHttp': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1868:5: note: in expansion of macro 'CORE_LOG' + 1868 | CORE_LOG(eLOG_Error, "LBOS is deprecated, consider using LBSMD instead."); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14391,12 +14413,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:201:9: note: in expansion of macro 'CORE_LOG_X' - 201 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1880:9: note: in expansion of macro 'CORE_LOG' + 1880 | CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14406,12 +14428,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:206:9: note: in expansion of macro 'CORE_LOG_X' - 206 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1888:9: note: in expansion of macro 'CORE_LOG' + 1888 | CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14421,12 +14443,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:684:13: note: in expansion of macro 'CORE_LOG_X' - 684 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1903:13: note: in expansion of macro 'CORE_LOG' + 1903 | CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14436,12 +14458,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:695:13: note: in expansion of macro 'CORE_LOGF_X' - 695 | CORE_LOGF_X(eLSub_Logic, eLOG_Critical, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1918:9: note: in expansion of macro 'CORE_LOG' + 1918 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14451,12 +14473,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:702:13: note: in expansion of macro 'CORE_LOGF_X' - 702 | CORE_LOGF_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1932:9: note: in expansion of macro 'CORE_LOG' + 1932 | CORE_LOG(eLOG_Critical, + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Announce': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14466,12 +14489,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:710:13: note: in expansion of macro 'CORE_LOG_X' - 710 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2047:9: note: in expansion of macro 'CORE_LOG' + 2047 | CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14481,13 +14504,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:720:13: note: in expansion of macro 'CORE_LOG_X' - 720 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorMemory': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2052:9: note: in expansion of macro 'CORE_LOGF' + 2052 | CORE_LOGF(eLOG_Warning, ("Announce failed. " + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14497,13 +14519,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:229:9: note: in expansion of macro 'CORE_LOG_X' - 229 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Init': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2061:13: note: in expansion of macro 'CORE_LOG' + 2061 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14513,13 +14534,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:273:13: note: in expansion of macro 'CORE_LOG_X' - 273 | CORE_LOG_X(eNSub_Libc, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Create': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2071:13: note: in expansion of macro 'CORE_LOG' + 2071 | CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14529,12 +14549,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:288:9: note: in expansion of macro 'CORE_LOG_X' - 288 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2084:9: note: in expansion of macro 'CORE_LOGF' + 2084 | CORE_LOGF(eLOG_Warning, ("Announce failed. " + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Announce': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14547,9 +14568,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:293:9: note: in expansion of macro 'CORE_LOG_X' - 293 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2150:13: note: in expansion of macro 'CORE_LOG_X' + 2150 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_AnnounceFromRegistry': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14559,12 +14581,20 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:298:9: note: in expansion of macro 'CORE_LOG_X' - 298 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2219:13: note: in expansion of macro 'CORE_LOGF_X' + 2219 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2226:53: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] + 2226 | if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || + | ~^ ~~~~~ + | | | + | | unsigned int * + | int * + | %d +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Deannounce': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14577,9 +14607,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:728:13: note: in expansion of macro 'CORE_LOG_X' - 728 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, "Couldn't clone net_info."); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2341:13: note: in expansion of macro 'CORE_LOG_X' + 2341 | CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_DeannounceAll': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14592,9 +14623,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:737:9: note: in expansion of macro 'CORE_LOG_X' - 737 | CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2399:9: note: in expansion of macro 'CORE_LOG_X' + 2399 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckConfArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14607,8 +14639,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:745:9: note: in expansion of macro 'CORE_LOG_X' - 745 | CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2451:9: note: in expansion of macro 'CORE_LOG_X' + 2451 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14619,12 +14651,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:754:13: note: in expansion of macro 'CORE_LOG_X' - 754 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2458:13: note: in expansion of macro 'CORE_LOGF_X' + 2458 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_ServiceVersionSet': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14637,9 +14670,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:765:13: note: in expansion of macro 'CORE_LOG_X' - 765 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2550:9: note: in expansion of macro 'CORE_LOG_X' + 2550 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorHttp': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14652,8 +14706,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:303:9: note: in expansion of macro 'CORE_LOG_X' - 303 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:201:9: note: in expansion of macro 'CORE_LOG_X' + 201 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14664,12 +14718,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:312:13: note: in expansion of macro 'CORE_LOGF_X' - 312 | CORE_LOGF_X(eNSub_Connect, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:206:9: note: in expansion of macro 'CORE_LOG_X' + 206 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorMemory': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14682,10 +14737,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:321:9: note: in expansion of macro 'CORE_LOG_X' - 321 | CORE_LOG_X(eNSub_Connect, eLOG_Error, "Unable to create connector."); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:229:9: note: in expansion of macro 'CORE_LOG_X' + 229 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Destroy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Init': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14698,9 +14753,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:332:9: note: in expansion of macro 'CORE_LOG_X' - 332 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:273:13: note: in expansion of macro 'CORE_LOG_X' + 273 | CORE_LOG_X(eNSub_Libc, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Create': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14713,10 +14769,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:338:9: note: in expansion of macro 'CORE_LOG_X' - 338 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:288:9: note: in expansion of macro 'CORE_LOG_X' + 288 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtab': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14729,8 +14784,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:399:9: note: in expansion of macro 'CORE_LOG_X' - 399 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't alloc for dtab."); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:293:9: note: in expansion of macro 'CORE_LOG_X' + 293 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14744,8 +14799,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:775:9: note: in expansion of macro 'CORE_LOG_X' - 775 | CORE_LOG_X(eLSub_BadData, eLOG_Error, "No endpoint data found."); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:298:9: note: in expansion of macro 'CORE_LOG_X' + 298 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14759,9 +14814,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:795:17: note: in expansion of macro 'CORE_LOG_X' - 795 | CORE_LOG_X(eLSub_Message, eLOG_Info, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:303:9: note: in expansion of macro 'CORE_LOG_X' + 303 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14771,12 +14826,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:799:17: note: in expansion of macro 'CORE_LOG_X' - 799 | CORE_LOG_X(eLSub_Message, eLOG_Info, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:312:13: note: in expansion of macro 'CORE_LOGF_X' + 312 | CORE_LOGF_X(eNSub_Connect, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14789,10 +14844,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:805:17: note: in expansion of macro 'CORE_LOG_X' - 805 | CORE_LOG_X(eLSub_Message, eLOG_Info, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetReqMethod': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:321:9: note: in expansion of macro 'CORE_LOG_X' + 321 | CORE_LOG_X(eNSub_Connect, eLOG_Error, "Unable to create connector."); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Destroy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14805,10 +14860,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:419:9: note: in expansion of macro 'CORE_LOG_X' - 419 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:332:9: note: in expansion of macro 'CORE_LOG_X' + 332 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetScheme': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14821,10 +14875,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:441:9: note: in expansion of macro 'CORE_LOG_X' - 441 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:338:9: note: in expansion of macro 'CORE_LOG_X' + 338 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetHttpProxy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtab': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14837,9 +14891,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:462:13: note: in expansion of macro 'CORE_LOG_X' - 462 | CORE_LOG_X(eNSub_BadData, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:399:9: note: in expansion of macro 'CORE_LOG_X' + 399 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't alloc for dtab."); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetReqMethod': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14852,9 +14907,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:473:9: note: in expansion of macro 'CORE_LOG_X' - 473 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:419:9: note: in expansion of macro 'CORE_LOG_X' + 419 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetScheme': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14867,9 +14923,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:807:17: note: in expansion of macro 'CORE_LOG_X' - 807 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:441:9: note: in expansion of macro 'CORE_LOG_X' + 441 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetHttpProxy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14879,12 +14936,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:819:13: note: in expansion of macro 'CORE_LOGF_X' - 819 | CORE_LOGF_X(eLSub_Logic, eLOG_Critical, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:462:13: note: in expansion of macro 'CORE_LOG_X' + 462 | CORE_LOG_X(eNSub_BadData, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14897,8 +14954,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:826:9: note: in expansion of macro 'CORE_LOG_X' - 826 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, "Unable to resolve endpoint."); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:473:9: note: in expansion of macro 'CORE_LOG_X' + 473 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -15647,14 +15704,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1602:9: note: in expansion of macro 'CORE_LOG_X' 1602 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't clone net_info."); | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15670,33 +15719,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1615:9: note: in expansion of macro 'CORE_LOG_X' 1615 | CORE_LOG_X(eNSub_BadData, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'SERV_SetImplicitServerType': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1115:9: warning: pointer 'svc' may be used after 'realloc' [-Wuse-after-free] - 1115 | free(svc); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1113:25: note: call to 'realloc' here - 1113 | if (!(buf = (char*) realloc(svc, len + sizeof(CONN_IMPLICIT_SERVER_TYPE) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1114 | + 2/*"=\0"*/) + strlen(typ))) { - | ~~~~~~~~~~~~~ -nclude /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o -/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libcomposition_adjustment.so -/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.composition_adjustment.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c -o parson.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c -o ncbi_localip.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/bmake[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core_cxx.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -15807,7 +15829,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_object_add': +nclude /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o +/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libcomposition_adjustment.so +/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.composition_adjustment.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c -o parson.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c -o ncbi_localip.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/b/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_object_add': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 135 | strncpy(output_string, string, n); | ^ @@ -15848,7 +15888,15 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil.cpp -o sequtil.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o +/bin/rm -f libsequtil.so .libsequtil.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pimake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging/message.cpp -o message.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.so .libxlogging.so.stamp @@ -15857,14 +15905,69 @@ /bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxlogging.so /bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xlogging.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbienv.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/env_reg.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp -o stltypes.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberid.cpp -o memberid.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberlist.cpp -o memberlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/item.cpp -o item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp -o classinfob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/member.cpp -o member.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +e-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libsequtil.so +/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.sequtil.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +kg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproduciblIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialdef.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/typeref.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -15974,60 +16077,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbienv.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/env_reg.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil.cpp -o sequtil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o -/bin/rm -f libsequtil.so .libsequtil.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pikg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libsequtil.so -/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.sequtil.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeinfo.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -16059,21 +16108,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialdef.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/typeref.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_gnutls.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 48 | eNcbiCred_MbedTls = 0xC12CC114 @@ -16134,14 +16168,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -e-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connect_misc.cpp -o connect_misc.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 48 | eNcbiCred_MbedTls = 0xC12CC114 | ^~~~~~~~~~ @@ -16153,18 +16180,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 48 | eNcbiCred_MbedTls = 0xC12CC114 - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 'x_MbedTlsLogger': @@ -16183,9 +16198,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:169:5: note: in expansion of macro 'CORE_LOGF' 169 | CORE_LOGF(eLOG_Note, ("MBEDTLS%d: %.*s", level, (int) len, message)); | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c: In function 's_NoTlsInit': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsCreate': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -16198,10 +16211,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:60:5: note: in expansion of macro 'CORE_LOG' - 60 | CORE_LOG(eLOG_Critical, "SSL has been explicitly disabled"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c: In function 'x_SetupNoTls': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:331:9: note: in expansion of macro 'CORE_LOG' + 331 | CORE_LOG(eLOG_Error, "Server-side SSL not yet supported with MBEDTLS"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -16211,13 +16223,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:71:5: note: in expansion of macro 'CORE_LOG' - 71 | CORE_LOG(eLOG_Trace, "SSL has been explicitly disabled"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c: In function 'NcbiSetupTls': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:339:13: note: in expansion of macro 'CORE_LOGF' + 339 | CORE_LOGF(eLOG_Error, + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsWrite': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:551:9: warning: 'mbedtls_ssl_get_max_frag_len' is deprecated [-Wdeprecated-declarations] + 551 | = mbedtls_ssl_get_max_frag_len((mbedtls_ssl_context*) session); + | ^ +In file included from /usr/include/mbedtls/debug.h:31, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:44: +/usr/include/mbedtls/ssl.h:3840:27: note: declared here + 3840 | MBEDTLS_DEPRECATED size_t mbedtls_ssl_get_max_frag_len( + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsInit': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -16230,9 +16251,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:93:17: note: in expansion of macro 'CORE_LOGF' - 93 | CORE_LOGF(eLOG_Critical, ("Unknown TLS provider \"%s\"", str)); - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:704:9: note: in expansion of macro 'CORE_LOGF' + 704 | CORE_LOGF(level, ("%s V%s (LogLevel=%d)", + | ^~~~~~~~~ +e-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connect_misc.cpp -o connect_misc.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 48 | eNcbiCred_MbedTls = 0xC12CC114 + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c: In function 's_NoTlsInit': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -16245,10 +16288,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:97:13: note: in expansion of macro 'CORE_LOG' - 97 | CORE_LOG(eLOG_Critical, "No TLS support included in this build"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsCreate': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:60:5: note: in expansion of macro 'CORE_LOG' + 60 | CORE_LOG(eLOG_Critical, "SSL has been explicitly disabled"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c: In function 'x_SetupNoTls': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -16261,9 +16304,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:331:9: note: in expansion of macro 'CORE_LOG' - 331 | CORE_LOG(eLOG_Error, "Server-side SSL not yet supported with MBEDTLS"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:71:5: note: in expansion of macro 'CORE_LOG' + 71 | CORE_LOG(eLOG_Trace, "SSL has been explicitly disabled"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c: In function 'NcbiSetupTls': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -16276,19 +16320,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:339:13: note: in expansion of macro 'CORE_LOGF' - 339 | CORE_LOGF(eLOG_Error, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsWrite': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:551:9: warning: 'mbedtls_ssl_get_max_frag_len' is deprecated [-Wdeprecated-declarations] - 551 | = mbedtls_ssl_get_max_frag_len((mbedtls_ssl_context*) session); - | ^ -In file included from /usr/include/mbedtls/debug.h:31, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:44: -/usr/include/mbedtls/ssl.h:3840:27: note: declared here - 3840 | MBEDTLS_DEPRECATED size_t mbedtls_ssl_get_max_frag_len( - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsInit': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:93:17: note: in expansion of macro 'CORE_LOGF' + 93 | CORE_LOGF(eLOG_Critical, ("Unknown TLS provider \"%s\"", str)); + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -16298,13 +16332,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:704:9: note: in expansion of macro 'CORE_LOGF' - 704 | CORE_LOGF(level, ("%s V%s (LogLevel=%d)", - | ^~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:97:13: note: in expansion of macro 'CORE_LOG' + 97 | CORE_LOG(eLOG_Critical, "No TLS support included in this build"); + | ^~~~~~~~ ++-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp -o stltypes.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberid.cpp -o memberid.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberlist.cpp -o memberlist.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/item.cpp -o item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp -o classinfob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/member.cpp -o member.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.so .libutrtprof.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libutrtprof.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC rtprofile.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread @@ -16313,6 +16353,14 @@ /bin/ln -f .utrtprof.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.utrtprof.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp: In static member function 'static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long double]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] + 147 | in.SkipStd(data); + | ~~~~~~~~~~^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: note: by argument 2 of type 'const long double&' to 'void (ncbi::CObjectIStream::)(const long double&)' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:146:25: note: 'data' declared here + 146 | TObjectType data; + | ^~~~ ds/c++/src/serial/classinfo.cpp -o classinfo.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp -o variant.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/choice.cpp -o choice.o @@ -16333,19 +16381,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o @@ -16357,17 +16392,30 @@ /bin/ln -f .gene_info.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.gene_info.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -16478,14 +16526,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp: In static member function 'static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long double]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] - 147 | in.SkipStd(data); - | ~~~~~~~~~~^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: note: by argument 2 of type 'const long double&' to 'void (ncbi::CObjectIStream::)(const long double&)' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:146:25: note: 'data' declared here - 146 | TObjectType data; - | ^~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -16499,19 +16540,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' --D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/components.cpp -o components.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/indentstream.cpp -o indentstream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/html_exception.cpp -o html_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o -/bin/rm -f libxhtml.so .libxhtml.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxhtml.so -/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xhtml.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistr.cpp:62: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -16525,32 +16553,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:62: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +-D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/components.cpp -o components.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/indentstream.cpp -o indentstream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/html_exception.cpp -o html_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o +/bin/rm -f libxhtml.so .libxhtml.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxhtml.so +/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xhtml.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -16598,14 +16612,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -AD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp -o objcopy.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/iterator.cpp -o iterator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp -o serial.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/delaybuf.cpp -o delaybuf.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pack_string.cpp -o pack_string.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/exception.cpp -o exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objhook.cpp -o objhook.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp: In member function 'void gene_info::s_MainInfoReaderTest::test_method()': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:62: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp: In member function 'void gene_info::s_MainInfoReaderTest::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:328:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 328 | auto_ptr fileReader1(pReader1); | ^~~~~~~~ @@ -16631,7 +16664,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objlist.cpp -o objlist.o +AD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp -o objcopy.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/iterator.cpp -o iterator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp -o serial.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/delaybuf.cpp -o delaybuf.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pack_string.cpp -o pack_string.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/exception.cpp -o exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objhook.cpp -o objhook.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objlist.cpp -o objlist.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objstack.cpp -o objstack.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrasn.cpp -o objostrasn.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrasn.cpp -o objistrasn.o @@ -16645,35 +16685,29 @@ /bin/ln -f libxconnect.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxconnect.so /bin/ln -f .xconnect.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrxml.cpp -o objistrxml.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrjson.cpp -o objostrjson.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrjson.cpp -o objistrjson.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serializable.cpp -o serializable.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serialobject.cpp -o serialobject.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pathhook.cpp -o pathhook.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buimake[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -cd algo/blast/core/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null -cd connect/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +cd algo/blast/core/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd connect/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core TMPL=blast -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xthrserv -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core TMPL=blast -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xthrserv -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o @@ -16728,18 +16762,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:293:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 293 | lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c: In function 'BlastNaHashLookupTableNew': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2236:27: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic] - 2236 | lookup->hash_callback = FNV_hash; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2296:49: warning: ISO C forbids passing argument 8 of 'BlastHashLookupIndexQueryExactMatches' between function pointer and 'void *' [-Wpedantic] - 2296 | lookup->hash_callback, - | ~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_nalookup.h:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected 'TNaLookupHashFunction' {aka 'unsigned int (*)(unsigned char *, unsigned int)'} but argument is of type 'void *' - 181 | TNaLookupHashFunction hash_func, - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_SmallNaChooseScanSubject': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1320:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1320 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; @@ -16774,9 +16796,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1349:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1349 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c: In function 'BlastNaHashLookupTableNew': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1354:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1354 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_8_4; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2236:27: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic] + 2236 | lookup->hash_callback = FNV_hash; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2296:49: warning: ISO C forbids passing argument 8 of 'BlastHashLookupIndexQueryExactMatches' between function pointer and 'void *' [-Wpedantic] + 2296 | lookup->hash_callback, + | ~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_nalookup.h:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected 'TNaLookupHashFunction' {aka 'unsigned int (*)(unsigned char *, unsigned int)'} but argument is of type 'void *' + 181 | TNaLookupHashFunction hash_func, + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1360:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1360 | (void *)s_BlastSmallNaScanSubject_Any; | ^ @@ -16958,7 +16992,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:2190:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 2190 | (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; | ^ -_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o +/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrxml.cpp -o objistrxml.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrjson.cpp -o objostrjson.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrjson.cpp -o objistrjson.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serializable.cpp -o serializable.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serialobject.cpp -o serialobject.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pathhook.cpp -o pathhook.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/bui_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o @@ -16985,6 +17025,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/link_hsps.c:136:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 136 | if (h1->query.offset < h2->query.offset) | ^~ +specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/user_agent.cpp -o user_agent.o +/bin/rm -f libxcgi.so .libxcgi.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcgi.so +/bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcgi.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' nline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o @@ -16997,26 +17045,7 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_program.c -o blast_program.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c: In function 'SPHIPatternSearchBlkNew': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 634 | localPattern[posIndex-1] = 1; - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset [-330, -1] into destination object 'localPattern' of size 330 - 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 634 | localPattern[posIndex-1] = 1; - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset -1 into destination object 'localPattern' of size 330 - 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp: In member function 'void ncbi::CServer_Monitor::SetSocket(ncbi::CSocket&)': +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SO/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp: In member function 'void ncbi::CServer_Monitor::SetSocket(ncbi::CSocket&)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp:56:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 56 | auto_ptr s(new CSocket()); | ^~~~~~~~ @@ -17031,22 +17060,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/split_query.c -o split_query.o +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c: In function 'SPHIPatternSearchBlkNew': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 634 | localPattern[posIndex-1] = 1; + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset [-330, -1] into destination object 'localPattern' of size 330 + 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 634 | localPattern[posIndex-1] = 1; + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset -1 into destination object 'localPattern' of size 330 + 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether + | ^~~~~~~~~~~~ +URCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_program.c -o blast_program.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/split_query.c -o split_query.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/jumper.c -o jumper.o -/usr/bin/gcc -std=gnspecs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/user_agent.cpp -o user_agent.o -/bin/rm -f libxcgi.so .libxcgi.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcgi.so -/bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcgi.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] +/usr/bin/gcc -std=gn/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING | ^ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:33: @@ -17127,6 +17167,19 @@ /bin/ln -f .blast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +y -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/lzo.cpp -o lzo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/tar.cpp -o tar.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive.cpp -o archive.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o +/bin/rm -f libxcompress.so .libxcompress.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcompress.so +/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcompress.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server.cpp -o server.o @@ -17139,24 +17192,17 @@ /bin/ln -f .xthrserv.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xthrserv.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -cd connect/services/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null +cd connect/services/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services TMPL=xconnserv -w -j16 --jobserver-auth=7,8 all -y -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/lzo.cpp -o lzo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/tar.cpp -o tar.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive.cpp -o archive.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o -/bin/rm -f libxcompress.so .libxcompress.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lm -lpthread make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services TMPL=xconnserv -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o @@ -17174,7 +17220,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_commit_thread.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -17322,8 +17368,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_control_thread.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_main_loop.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -17472,7 +17517,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_app.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -17618,8 +17663,9 @@ 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_client_app.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_client_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -17728,10 +17774,45 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_main_loop.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_client_app.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_client_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -17840,46 +17921,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_app.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18176,7 +18222,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_commit_thread.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_control_thread.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18321,12 +18367,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ - -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcompress.so -/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcompress.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' ld/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libxser.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread @@ -18335,17 +18375,17 @@ /bin/ln -f .xser.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -cd serial/datatool/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd serial/datatool/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool TMPL=datatool -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool TMPL=datatool -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.cpp -o type.o @@ -18361,7 +18401,7 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/classstr.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18472,7 +18512,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicestr.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/classstr.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18583,7 +18623,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.cpp:59: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18692,9 +18732,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +last+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/remote_app.cpp -o remote_app.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/srv_connections.cpp -o srv_connections.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_api.cpp -o netservice_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_params.cpp -o netservice_params.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducibIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.cpp:59: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicestr.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18803,18 +18850,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -last+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/remote_app.cpp -o remote_app.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/srv_connections.cpp -o srv_connections.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_api.cpp -o netservice_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_params.cpp -o netservice_params.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducibIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choiceptrstr.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18923,45 +18961,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/exceptions.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choiceptrstr.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -19070,19 +19087,76 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ E64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/classstr.cpp -o classstr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/value.cpp -o value.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_le-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_key.cpp -o netcache_key.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/unitype.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/moduleset.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -19192,73 +19266,33 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/unitype.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/exceptions.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o +le-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_key.cpp -o netcache_key.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOAPP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/moduleset.cpp -o moduleset.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/generate.cpp -o generate.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/fileutil.cpp -o fileutil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-mURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/alexer.cpp -o alexer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/aparser.cpp -o aparser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat 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-I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/util.cpp -o util.o -/usr/bin/g++ ap=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/alexer.cpp -o alexer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/aparser.cpp -o aparser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/parser.cpp -o parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/lexer.cpp -o lexer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/exceptions.cpp -o exceptions.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/comments.cpp -o comments.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARG-std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/clparser.cpp -o clparser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage.cpp -o netstorage.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/aliasstr.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -19486,7 +19520,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +-std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/clparser.cpp -o clparser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage.cpp -o netstorage.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/wsdlparser.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -19620,93 +19660,95 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o tedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxconnserv.so -/bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xconnserv.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -raversal_spec_file_parser.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin /bin/ln -f datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -cd objects/general/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/biblio/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/medline/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/pub/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/seqcode/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/general/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/biblio/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/medline/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/pub/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/seq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/seqcode/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh biblio all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh general all +cd objects/seq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/seqset/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/scoremat/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/seqset/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/scoremat/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh biblio all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh general all +make[4]: warning: -j15 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh medline all -cd objects/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqcode all +cd objects/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh pub all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqset all -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/genomecoll/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/seqedit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +cd objects/genomecoll/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqcode all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/seqsplit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh scoremat all +cd objects/seqedit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqset all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blast all +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastdb all -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/submit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd objects/seqsplit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh scoremat all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blast all +cd objects/submit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastdb all +make[4]: warning: -j15 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqedit all -cd objects/variation/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh genome_collection all -cd objects/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqsplit all -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh submit all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh variation all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id1 all make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Makefile.sources builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -w -j16 --jobserver-auth=9,10 all -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Makefile.sources builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -w -j15 --jobserver-auth=9,10 all +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +edule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxconnserv.so +/bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xconnserv.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +cd objects/variation/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh variation all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m general.asn -M "" -oA \ @@ -19715,39 +19757,26 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -/usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ - -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ + -oc medline -or objects/medline -odi -od medline.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqcode.asn -M "" -oA \ @@ -19756,20 +19785,19 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ - -oc medline -or objects/medline -odi -od medline.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ @@ -19778,45 +19806,10 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ - -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ - -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ @@ -19826,9 +19819,53 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ + -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ + -oc submit -or objects/submit -odi -od submit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +/usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ @@ -19837,27 +19874,20 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' /usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ - -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ @@ -19866,111 +19896,40 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ - -oc variation -or objects/variation -odi -od variation.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ - -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ + -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -/usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gencoll_client all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. -Waiting for /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lockmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +/usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ - -oc submit -or objects/submit -odi -od submit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ + -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' -/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' +/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ @@ -19979,44 +19938,94 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' -/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ + -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gencoll_client all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +/usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +Waiting for /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lock/usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ + -oc variation -or objects/variation -odi -od variation.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' status=0 ; \ -MAKE="/usr/bin/make -w -j16 --jobserver-auth=12,14"; \ +MAKE="/usr/bin/make -w -j15 --jobserver-auth=12,14"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../$x ; \ @@ -20027,7 +20036,7 @@ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -20036,7 +20045,7 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqblock' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -20044,10 +20053,10 @@ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.20.1 -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+make[7]: warning: -j16 forced in submake: resetting jobserver mode. -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+make[7]: warning: -j15 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. -2.12.0+ds/c++/src/objects/seqblock' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ @@ -20056,7 +20065,7 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ @@ -20065,142 +20074,97 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbmake[7]: warning: -j16 forced in submake: resetting jobserver mode. -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbmake[7]: warning: -j15 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -cd objects/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id2 all +cd objects/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +cd objects/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -cd objects/taxon1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +cd objects/taxon1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon1 all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -cd objects/blastxml/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +cd objects/blastxml/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/blastxml2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id1 all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/blastxml2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon1 all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml2 all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -cd objtools/eutils/egquery/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -cd objtools/eutils/ehistory/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id2 all +cd objtools/eutils/egquery/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +cd objtools/eutils/ehistory/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd egquery all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -cd objtools/eutils/einfo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objtools/eutils/elink/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd ehistory all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +cd objtools/eutils/einfo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +cd objtools/eutils/elink/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml2 all +cd objects/entrez2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -cd objects/entrez2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/eutils/epost/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ - -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd egquery all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd ehistory all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +cd objtools/eutils/esearch/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd einfo all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd epost all cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd elink all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh entrez2 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ - -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esearch all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -cd objtools/eutils/epost/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -cd objtools/eutils/esearch/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -cd objtools/eutils/espell/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd objtools/eutils/espell/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd epost all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esearch all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -File blastxml.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd espell all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastxml.asn -M "" -oA \ - -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ + -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd espell all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/eutils/esummary/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -cd objtools/eutils/uilist/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. File blastxml2.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastxml2.asn -M "" -oA \ @@ -20209,49 +20173,22 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' -/usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esummary all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd uilist all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -NOTE: skipping project "local_taxon" due to unmet requirements -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -File egquery.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +File blastxml.module not found. Using defaults... +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m egquery.dtd -M "" -oA \ - -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastxml.asn -M "" -oA \ + -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' File ehistory.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m ehistory.dtd -M "" -oA \ @@ -20260,30 +20197,39 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ + -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. File einfo.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m einfo.dtd -M "" -oA \ @@ -20292,38 +20238,27 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.egquery.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ehistory.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' -File elink.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +File egquery.module not found. Using defaults... +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m elink.dtd -M "" -oA \ - -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m egquery.dtd -M "" -oA \ + -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' File epost.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m epost.dtd -M "" -oA \ @@ -20332,11 +20267,43 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' + +Acquired /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 1494460 (make_asn) +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ + -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m entrez2.asn -M "" -oA \ @@ -20345,47 +20312,82 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' -/usr/bin/make[4] (Makefile.einfo.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -File espell.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' +/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' +File elink.module not found. Using defaults... +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m espell.dtd -M "" -oA \ - -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m elink.dtd -M "" -oA \ + -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' -/usr/bin/make[4] (Makefile.elink.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +/usr/bin/make[4] (Makefile.ehistory.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -File esummary.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m esummary.dtd -M "" -oA \ - -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.einfo.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +/usr/bin/make[4] (Makefile.egquery.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.epost.lib): Nothing to be done for `export-headers'. +make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +NOTE: skipping project "local_taxon" due to unmet requirements +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. File esearch.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m esearch.dtd -M "" -oA \ @@ -20394,97 +20396,84 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' +/usr/bin/make[4] (Makefile.elink.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.epost.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -File uilist.module not found. Using defaults... -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m uilist.dtd -M "" -oA \ - -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -/usr/bin/make[4] (Makefile.espell.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.esummary.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -/usr/bin/make[4] (Makefile.esearch.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.uilist.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' /usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. -. -Acquired /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 3820751 (make_asn) -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +File espell.module not found. Using defaults... +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ - -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m espell.dtd -M "" -oA \ + -oc espell -or objtools/eutils/espell -odi -od espell.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd espell.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' +/usr/bin/make[4] (Makefile.esearch.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +/usr/bin/make[4] (Makefile.espell.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ + -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' /usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' NOTE: skipping project "gencoll_client" due to unmet requirements make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' i-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres' @@ -20495,7 +20484,7 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres' -/usr/bin/make -w -j16 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j15 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ @@ -20507,8 +20496,8 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seq all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ @@ -20518,151 +20507,152 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +cd objtools/eutils/esummary/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +cd objtools/eutils/uilist/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +cd objects/gbseq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -cd objects/gbseq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -cd objects/medlars/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd objects/medlars/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esummary all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gbseq all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -cd objects/pubmed/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh medlars all -cd objects/mla/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources +cd objects/pubmed/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd uilist all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -cd objects/taxon3/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh pubmed all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -cd objects/valid/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 sources -cd objects/general/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh mla all +cd objects/mla/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gbseq all +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/taxon3/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh medlars all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -cd objects/seqcode/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null +cd objects/valid/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 sources +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/blastxml/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh mla all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh pubmed all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +cd objects/general/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqcode/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon3 all +cd objects/blastxml/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh valid all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon3 all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -cd objects/blastxml2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/eutils/egquery/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=egquery UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/eutils/ehistory/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ehistory UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +cd objects/blastxml2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -cd objtools/eutils/einfo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=einfo UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -cd objtools/eutils/elink/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=elink UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml TMPL=blastxml -w -j16 --jobserver-auth=7,8 all -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general TMPL=general -w -j16 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general TMPL=general -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode TMPL=seqcode -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode TMPL=seqcode -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml TMPL=blastxml -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +cd objtools/eutils/egquery/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=egquery UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery TMPL=egquery -w -j16 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo TMPL=einfo -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink TMPL=elink -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -cd objects/entrez2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +cd objtools/eutils/ehistory/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ehistory UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery TMPL=egquery -w -j15 --jobserver-auth=7,8 all +File uilist.module not found. Using defaults... +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m uilist.dtd -M "" -oA \ + -oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +File esummary.module not found. Using defaults... +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m esummary.dtd -M "" -oA \ + -oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m gbseq.asn -M "" -oA \ @@ -20671,16 +20661,24 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ @@ -20689,15 +20687,12 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ @@ -20706,26 +20701,50 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +/usr/bin/make[4] (Makefile.esummary.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.uilist.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m valid.asn -M "" -oA \ - -oc valid -or objects/valid -odi -od valid.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ + -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +/usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ @@ -20734,140 +20753,161 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +/usr/bin/make -w -j15 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m valid.asn -M "" -oA \ + -oc valid -or objects/valid -odi -od valid.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ + +datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' /usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j16 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ - -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +/usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -cd objtools/eutils/epost/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=epost UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost TMPL=epost -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd objtools/eutils/einfo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=einfo UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo TMPL=einfo -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -cd objtools/eutils/esearch/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esearch UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/eutils/espell/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=espell UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/eutils/elink/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=elink UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +cd objects/entrez2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +cd objtools/eutils/epost/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=epost UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -cd objtools/eutils/esummary/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esummary UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +cd objtools/eutils/esearch/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esearch UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +cd objtools/eutils/espell/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=espell UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +cd objtools/eutils/esummary/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esummary UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/eutils/uilist/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=uilist UNIX_PROJ="" sources= configurables=configurables.null -cd objects/gbseq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +cd objtools/eutils/uilist/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=uilist UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +cd objects/gbseq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink TMPL=elink -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch TMPL=esearch -w -j16 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost TMPL=epost -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2 -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary TMPL=esummary -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch TMPL=esearch -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell TMPL=espell -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary TMPL=esummary -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell TMPL=espell -w -j15 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist TMPL=uilist -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq TMPL=gbseq -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq TMPL=gbseq -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist TMPL=uilist -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/Date_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20880,8 +20920,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20894,8 +20934,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/elink___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20908,8 +20948,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/Seq_code_set_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/Date_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20922,8 +20962,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/BlastOutput_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20936,8 +20976,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20950,8 +20990,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/BlastOutput_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/Seq_code_set_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20964,8 +21004,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/E2Reply_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/IdList_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20978,8 +21018,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/EPostResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/ELinkResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/elink___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20992,8 +21032,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/E2Reply_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21006,8 +21046,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/DocSum_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/esummary___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21020,8 +21060,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/IdList_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/gbseq___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21034,8 +21074,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/DocSum_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/esummary___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21048,8 +21088,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/gbseq___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21062,8 +21102,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/EPostResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21085,16 +21125,6 @@ /bin/ln -f .egquery.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.egquery.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o -/bin/rm -f libepost.so .libepost.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libepost.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC epost__.o epost___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libepost.so -/bin/ln -f .epost.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.epost.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o @@ -21105,26 +21135,6 @@ /bin/ln -f .ehistory.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ehistory.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o -/bin/rm -f libeinfo.so .libeinfo.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libeinfo.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC einfo__.o einfo___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libeinfo.so -/bin/ln -f .einfo.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.einfo.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o -/bin/rm -f libseqcode.so .libseqcode.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqcode.so -/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqcode.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o @@ -21145,6 +21155,16 @@ /bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastxml.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o +/bin/rm -f libseqcode.so .libseqcode.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqcode.so +/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqcode.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o @@ -21165,16 +21185,26 @@ /bin/ln -f .esummary.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.esummary.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o -/bin/rm -f libesearch.so .libesearch.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libesearch.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC esearch__.o esearch___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libesearch.so -/bin/ln -f .esearch.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.esearch.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o +/bin/rm -f libeinfo.so .libeinfo.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libeinfo.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC einfo__.o einfo___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libeinfo.so +/bin/ln -f .einfo.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.einfo.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o +/bin/rm -f libepost.so .libepost.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libepost.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC epost__.o epost___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libepost.so +/bin/ln -f .epost.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.epost.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o @@ -21185,6 +21215,16 @@ /bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastxml2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o +/bin/rm -f libesearch.so .libesearch.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libesearch.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC esearch__.o esearch___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libesearch.so +/bin/ln -f .esearch.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.esearch.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o @@ -21195,17 +21235,17 @@ /bin/ln -f .entrez2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -cd objects/entrez2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null +cd objects/entrez2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2cli -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2cli -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o @@ -21216,17 +21256,17 @@ /bin/ln -f .elink.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.elink.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -cd objtools/eutils/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=eutils UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/eutils/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=eutils UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api TMPL=eutils -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api TMPL=eutils -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o @@ -21244,21 +21284,21 @@ /bin/ln -f .gbseq.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.gbseq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2_client_.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/epost.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/epost.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 198 | auto_ptr m_Stream; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/epost.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/egquery.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21266,16 +21306,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp: In member function 'virtual ncbi::CRef ncbi::CEFetch_Request::FetchIdList(int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:132:12: warning: catching polymorphic type 'class ncbi::CSerialException' by value [-Wcatch-value=] - 132 | catch (CSerialException) { - | ^~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/epost.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/epost.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/ehistory.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21283,12 +21319,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/epost.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/ehistory.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/einfo.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21296,11 +21332,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/eutils.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esummary.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21308,42 +21345,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general__.cpp -o general__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp -o general___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/uoconv.cpp -o uoconv.o -/bin/rm -f libgeneral.so .libgeneral.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgeneral.so -/bin/ln -f .general.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.general.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -cd objects/biblio/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null -cd objects/valid/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid TMPL=valid -w -j16 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/einfo.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/elink.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21351,28 +21358,25 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/espell.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 198 | auto_ptr m_Stream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2_client_.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio TMPL=biblio -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/elink.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21380,12 +21384,15 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esearch.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp: In member function 'virtual ncbi::CRef ncbi::CEFetch_Request::FetchIdList(int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:132:12: warning: catching polymorphic type 'class ncbi::CSerialException' by value [-Wcatch-value=] + 132 | catch (CSerialException) { + | ^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/eutils.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21393,12 +21400,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esummary.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esearch.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21406,12 +21413,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/egquery.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/espell.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21419,10 +21426,43 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general__.cpp -o general__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp -o general___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/uoconv.cpp -o uoconv.o +/bin/rm -f libgeneral.so .libgeneral.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgeneral.so +/bin/ln -f .general.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.general.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +cd objects/biblio/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +cd objects/valid/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio TMPL=biblio -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid TMPL=valid -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o @@ -21448,27 +21488,16 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:3: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/Affil_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/error_codes.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/static_set.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_rule.cpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:2: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp: In function 'void ncbi::objects::s_InitializeStructuredCommentRules()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:118:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 118 | auto_ptr in; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -21482,21 +21511,32 @@ /bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libeutils.so /bin/ln -f .eutils.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.eutils.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/Affil_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:3: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/error_codes.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/static_set.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_rule.cpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:2: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp: In function 'void ncbi::objects::s_InitializeStructuredCommentRules()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:118:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 118 | auto_ptr in; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid___.cpp -o valid___.o @@ -21518,28 +21558,28 @@ /bin/ln -f .biblio.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -cd objects/medline/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null -cd objects/medlars/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medline/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medlars/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline TMPL=medline -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars TMPL=medlars -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline TMPL=medline -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars TMPL=medlars -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/medlars___.cpp:2: @@ -21588,28 +21628,28 @@ /bin/ln -f .medline.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -cd objects/pub/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null -cd objects/pubmed/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pub/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/pubmed/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub TMPL=pub -w -j16 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed TMPL=pubmed -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub TMPL=pub -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed TMPL=pubmed -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/pubmed___.cpp:2: @@ -21658,28 +21698,28 @@ /bin/ln -f .pub.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -cd objects/seq/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null -cd objects/mla/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seq/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/mla/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mla -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq TMPL=seq -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq TMPL=seq -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mla -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqalign__.cpp -o seqalign__.o @@ -21693,8 +21733,9 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqblock___.cpp -o seqblock___.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqfeat___.cpp -o seqfeat___.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Align_def_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/seqres___.cpp:2, + from seqres___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21707,9 +21748,9 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, - from seqblock___.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, + from seqloc___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21722,9 +21763,9 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, - from seqfeat___.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Seq_id.cpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, + from seqloc__.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21732,14 +21773,17 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Giimport_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Giimport_id.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, - from seqalign___.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/Error_val_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21762,24 +21806,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapIupacnaToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:2923:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2923 | auto_ptr amb_context(NULL); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapNcbi4naToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:3228:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3228 | auto_ptr amb_context(NULL); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15, - from seqfeat__.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, + from seqtable___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21787,18 +21817,14 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Seq_id.cpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, - from seqloc__.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, + from seqblock___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21806,32 +21832,14 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Giimport_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Giimport_id.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:2: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:19: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In static member function 'static void ncbi::objects::CGen_code_table::LoadTransTable(const std::string&, ncbi::ESerialDataFormat)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:379:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 379 | auto_ptr ois(CObjectIStream::Open(path, format)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In constructor 'ncbi::objects::CGen_code_table_imp::CGen_code_table_imp()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:452:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 452 | auto_ptr - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/Error_val_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, + from seqfeat___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21844,9 +21852,9 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, - from seqtable___.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, + from seqalign___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21858,29 +21866,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 249 | pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here - 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqloc___.cpp -o seqloc___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqres___.cpp -o seqres___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqtable___.cpp -o seqtable___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducibleIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] - 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, - from seqloc___.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Align_def_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21892,10 +21880,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapIupacnaToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:2923:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2923 | auto_ptr amb_context(NULL); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/seqres___.cpp:2, - from seqres___.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15, + from seqfeat__.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21903,33 +21898,36 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapNcbi4naToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:3228:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3228 | auto_ptr amb_context(NULL); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:19: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In static member function 'static void ncbi::objects::CGen_code_table::LoadTransTable(const std::string&, ncbi::ESerialDataFormat)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:379:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 379 | auto_ptr ois(CObjectIStream::Open(path, format)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In constructor 'ncbi::objects::CGen_code_table_imp::CGen_code_table_imp()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:452:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 452 | auto_ptr + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, - from seqalign__.cpp:1: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1382:41: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] - 1382 | SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign__.cpp:3: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here - 909 | void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1386:34: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] - 1386 | (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here - 79 | NCBI_DEPRECATED void RemapToLoc(TDim row, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:40: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] - 1391 | (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here - 1365 | void CSeq_align::RemapToLoc(TDim row, - | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:13: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In function 'void ncbi::objects::x_MergeAndSort(CSeq_loc&, const CSeq_loc&, CSeq_loc::TOpFlags, ISynonymMapper&)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4648:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -21985,10 +21983,73 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, + from seqalign__.cpp:1: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1382:41: warning: 'void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] + 1382 | SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign__.cpp:3: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here + 909 | void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1386:34: warning: 'void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] + 1386 | (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here + 79 | NCBI_DEPRECATED void RemapToLoc(TDim row, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:40: warning: 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)' is deprecated [-Wdeprecated-declarations] + 1391 | (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here + 1365 | void CSeq_align::RemapToLoc(TDim row, + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function 'static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 249 | pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here + 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] + 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqloc___.cpp -o seqloc___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqres___.cpp -o seqres___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqtable___.cpp -o seqtable___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproduciblemake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla__.cpp -o mla__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla___.cpp -o mla___.o +/bin/rm -f libmla.so .libmla.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libmla.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mla__.o mla___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libmla.so +/bin/ln -f .mla.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.mla.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +cd objects/mla/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const std::string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp:2871:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 2871 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mlacli -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function 'static const ncbi::objects::CFeatList* ncbi::objects::CSeqFeatData::GetFeatList()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3752:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -22011,25 +22072,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla__.cpp -o mla__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla___.cpp -o mla___.o -/bin/rm -f libmla.so .libmla.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libmla.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mla__.o mla___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lmedlars -lpub -lpubmed -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libmla.so -/bin/ln -f .mla.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.mla.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -cd objects/mla/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectDateFormat(const std::string&, bool&, bool&)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp:464:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] @@ -22042,8 +22084,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp:516:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 516 | } catch (CException) { | ^~~~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mlacli -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp: In function 'ncbi::objects::CCountries::EStateCleanup ncbi::objects::s_DoUSAStateCleanup(std::string&)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp:4334:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4334 | for ( int j = 0; j < components.size(); j++ ) { @@ -22076,7 +22116,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': +-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/so_map.cpp -o so_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/ob/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1505 | if ( row_n == p_row ) { | ~~~~~~^~~~~~~~ @@ -22101,12 +22146,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ --path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/so_map.cpp -o so_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/obmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.so .libmlacli.so.stamp @@ -22155,75 +22195,75 @@ /bin/ln -f .seq.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -cd objects/seqset/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null -cd objects/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objects/genomecoll/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null -cd objects/variation/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null -cd objects/taxon1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqset/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objects/taxon3/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null +cd objects/genomecoll/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/variation/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/taxon1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/taxon3/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll TMPL=genome_collection -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb TMPL=blastdb -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset TMPL=seqset -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll TMPL=genome_collection -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb TMPL=blastdb -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation TMPL=variation -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 TMPL=taxon1 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 TMPL=taxon3 -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset TMPL=seqset -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation TMPL=variation -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 TMPL=taxon3 -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 TMPL=taxon1 -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/VariantPlacement_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/Bioseq_set_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22235,21 +22275,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 68 | auto_ptr m_In; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/gb_release_file.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/Taxon1_data_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22276,8 +22304,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/Bioseq_set_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22290,8 +22318,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/Taxon1_data_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22304,8 +22332,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/VariantPlacement_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22317,10 +22345,45 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 68 | auto_ptr m_In; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/gb_release_file.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/cache.cpp: In member function 'void ncbi::objects::CDomainStorage::AddField(int, int, const std::string&)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 787 | if( m_types.size() <= field_no ) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp: In member function 'virtual ncbi::CRef ncbi::objects::CTaxon3::SendRequest(const ncbi::objects::CTaxon3_request&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:116:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | auto_ptr pOut; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:117:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr pIn; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:118:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 118 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1.cpp: In member function 'bool ncbi::objects::CTaxon1::Init(const STimeout*, unsigned int, unsigned int)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1.cpp:141:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 141 | auto_ptr pServer; @@ -22363,29 +22426,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp: In member function 'virtual ncbi::CRef ncbi::objects::CTaxon3::SendRequest(const ncbi::objects::CTaxon3_request&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:116:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | auto_ptr pOut; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:117:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr pIn; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:118:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 118 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o @@ -22407,61 +22447,75 @@ /bin/ln -f .seqset.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -cd objects/scoremat/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null -cd objects/seqedit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/seqsplit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null -cd objects/submit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/scoremat/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -cd objects/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objects/seqedit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqsplit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/submit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat TMPL=scoremat -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit TMPL=seqedit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 TMPL=id1 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit TMPL=submit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit TMPL=seqsplit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat TMPL=scoremat -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit TMPL=seqsplit -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit TMPL=seqedit -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 TMPL=id1 -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit TMPL=submit -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/cache.cpp -o cache.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/utils.cpp -o utils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o +/bin/rm -f libtaxon1.so .libtaxon1.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libtaxon1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtaxon1.so +/bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.taxon1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o @@ -22483,23 +22537,9 @@ /bin/ln -f .variation.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.variation.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/cache.cpp -o cache.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/utils.cpp -o utils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o -/bin/rm -f libtaxon1.so .libtaxon1.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libtaxon1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtaxon1.so -/bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.taxon1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/Contact_info_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/submit___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22512,8 +22552,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22539,19 +22579,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o -/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgenome_collection.so -/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.genome_collection.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/Contact_info_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/submit___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22577,6 +22607,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o +/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgenome_collection.so +/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.genome_collection.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1__.cpp -o id1__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1___.cpp -o id1___.o @@ -22597,17 +22637,17 @@ /bin/ln -f .submit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -cd objtools/readers/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/readers/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers TMPL=xobjread -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers TMPL=xobjread -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o @@ -22731,10 +22771,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::' [-Wenum-compare] - 1706 | if (code < CODE_Last) { - | ~~~~~^~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o @@ -22745,17 +22781,21 @@ /bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.scoremat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -cd objects/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=blast -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=blast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::' [-Wenum-compare] + 1706 | if (code < CODE_Last) { + | ~~~~~^~~~~~~~~~~ tack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta.cpp -o fasta.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp -o alnread.o @@ -22782,44 +22822,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 585 | catch(CException e){ | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/format_guess_ex.hpp:140:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 140 | auto_ptr m_Guesser; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(CNcbiIstream&, EAgpRead_IdRule, bool, std::vector >*)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp:58:12: warning: 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] 58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types); @@ -22837,102 +22839,69 @@ | ^~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:66: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryRmo()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 242 | auto_ptr reader(new CRepeatMaskerReader(Flags)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/format_guess_ex.hpp:140:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 140 | auto_ptr m_Guesser; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const std::string&, const std::vector&, int, int, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 56 | if ((orderedIds.size() > idCount) && - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(TSample&, ncbi::objects::CPeekAheadStream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 137 | if (lineCount < sample.size()) { - | ~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsFastaGap(const TSample&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:176:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 176 | for ( ; i < sample.size(); ++i) { - | ~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:181:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 181 | if (i < sample.size()) { - | ~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsSequin(const TSample&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:234:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 234 | for (int index=0; index < tokens.size(); ++index) { - | ~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsMultAlign(const TSample&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:258:23: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 258 | if (sample.size() < lineIndex + 4) { - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 295 | return (dataSize == (endOffset - startOffset + 1)); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o @@ -22944,16 +22913,16 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -22967,28 +22936,28 @@ /bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqsplit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -cd objmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null -cd objects/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null +cd objmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objects/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr TMPL=objmgr -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 TMPL=id2 -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr TMPL=objmgr -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 TMPL=id2 -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o @@ -23005,42 +22974,112 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_object.cpp -o annot_object.o /usr/bin/g++ -std=gnu++14 -c -WaIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp:32: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:66: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const std::string&, const std::vector&, int, int, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 56 | if ((orderedIds.size() > idCount) && + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ _MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 92 | for (auto i=0; i < mSequences.size(); ++i) { - | ~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const std::string&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 233 | if (index >= mSeqIds.size()) { - | ~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast___.cpp:2: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryRmo()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 242 | auto_ptr reader(new CRepeatMaskerReader(Flags)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(TSample&, ncbi::objects::CPeekAheadStream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 137 | if (lineCount < sample.size()) { + | ~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsFastaGap(const TSample&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:176:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 176 | for ( ; i < sample.size(); ++i) { + | ~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:181:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 181 | if (i < sample.size()) { + | ~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsSequin(const TSample&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:234:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 234 | for (int index=0; index < tokens.size(); ++index) { + | ~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp: In member function 'bool ncbi::objects::CAlnFormatGuesser::xSampleIsMultAlign(const TSample&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:258:23: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 258 | if (sample.size() < lineIndex + 4) { + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 295 | return (dataSize == (endOffset - startOffset + 1)); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -23086,16 +23125,348 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) { | ~~^~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp: In member function 'virtual void ncbi::objects::CAlnScannerFastaGap::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp:121:41: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 121 | if (currentDataSize != expectedDataSize) { + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 92 | for (auto i=0; i < mSequences.size(); ++i) { + | ~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const std::string&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 233 | if (index >= mSeqIds.size()) { + | ~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 296 | if (currentLineLength != blockLineLength) { + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/getfeature.cpp -o getfeature.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp: In member function 'virtual void ncbi::objects::CAlnScannerFastaGap::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp:121:41: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 121 | if (currentDataSize != expectedDataSize) { - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2___.cpp:2: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_switch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_table_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 129 | if (dataLineCount < mSequenceCount) { // in first block + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 210 | if (mSequenceCount != mSeqIds.size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/graph_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/graph_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:73:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 73 | if (lineInBlock != mSeqIds.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 156 | if (lineInBlock >= mSeqIds.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 186 | for (auto i = 0; i < seqData.size(); ++i) { + | ~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const std::string&, std::string&, std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { + | ~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/track_data.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -23206,6 +23577,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_data.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -23316,204 +23713,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 296 | if (currentLineLength != blockLineLength) { - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2___.cpp:2: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 129 | if (dataLineCount < mSequenceCount) { // in first block - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 210 | if (mSequenceCount != mSeqIds.size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/graph_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/graph_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_name.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_selector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:73:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 73 | if (lineInBlock != mSeqIds.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 156 | if (lineInBlock >= mSeqIds.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 186 | for (auto i = 0; i < seqData.size(); ++i) { - | ~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const std::string&, std::string&, std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { - | ~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 125 | if (lineInBlock != expectedNumSequences) { @@ -23521,86 +23720,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_name.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_selector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -23617,27 +23747,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -23748,75 +23857,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/src/objtools/readers/gff_reader.cpp -o gff_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/track_data.cpp -o track_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_data.cpp -o reader_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/phrap.cpp -o phrap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp -o reader_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp -o readfeat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:41: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_switch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -23828,28 +23873,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:60: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -23862,13 +23904,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; @@ -23882,17 +23917,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:472:18: warning: 'CGFFReader' is deprecated [-Wdeprecated-declarations] - 472 | CRef - | ^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:71:44: note: declared here - 71 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGFFReader - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -23925,38 +23963,43 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/src/objtools/readers/gff_reader.cpp -o gff_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/track_data.cpp -o track_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_data.cpp -o reader_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/phrap.cpp -o phrap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp -o reader_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp -o readfeat.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-ll -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:62: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -ll -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -23964,20 +24007,30 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_table_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -23985,39 +24038,41 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:60: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:62: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:472:18: warning: 'CGFFReader' is deprecated [-Wdeprecated-declarations] + 472 | CRef + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:71:44: note: declared here + 71 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGFFReader + | ^~~~~~~~~~ blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o @@ -24036,21 +24091,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -24067,26 +24107,31 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp:554:44: warning: enum constant in boolean context [-Wint-in-bool-context] - 554 | if (fRemoveRedundancy && m_Library && - | ^~~~~~~~~ +ild/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp -o priority.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, EQual, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp:1406:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 1406 | } catch( CStringException ) { + | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -24103,23 +24148,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -ild/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp -o priority.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+dsIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24129,25 +24158,22 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, EQual, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp:1406:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 1406 | } catch( CStringException ) { - | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24158,31 +24184,16 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -24196,30 +24207,22 @@ /bin/ln -f .id2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' NOTE: skipping project "psg_client" due to unmet requirements make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp:35: +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24229,27 +24232,39 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp:554:44: warning: enum constant in boolean context [-Wint-in-bool-context] + 554 | if (fRemoveRedundancy && m_Library && + | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -24262,6 +24277,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -24274,29 +24297,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/heap_scope.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp -o scope.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24311,13 +24329,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/heap_scope.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:41: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp:71: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -24338,7 +24366,35 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp -o scope.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/prefetch_actions.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp:34: @@ -24366,29 +24422,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:834:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] - 834 | for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:923:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - 923 | for (auto i=0; i)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] - 1008 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -24415,36 +24451,31 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp: In member function 'virtual void ncbi::objects::CVcfReader::xSetFileFormat(const std::string&, ncbi::objects::CSeq_annot&, bool&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp:332:27: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] - 332 | catch (std::exception except) { - | ^~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:834:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] + 834 | for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:923:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 923 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -24458,6 +24489,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xAlignmentSetSpliced_seg(const ncbi::objects::CGff2Record&, ncbi::CRef)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] + 1008 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -24470,25 +24505,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -24510,7 +24538,7 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24541,30 +24569,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/tse_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:37: @@ -24586,100 +24590,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:58: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp: In member function 'void ncbi::objects::CPslData::Initialize(const ncbi::objects::CReaderBase::TReaderLine&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:144:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 144 | if (mBlockCount != mBlockSizes.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 150 | if (mBlockCount != mBlockStartsQ.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 156 | if (mBlockCount != mBlockStartsT.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_ci.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_entry_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_ci.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp -o seq_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=62.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp -o psl_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -24691,37 +24605,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -24731,7 +24614,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -24750,48 +24634,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 92 | mColName + mColScore != -6); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_table_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -24799,64 +24645,29 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/tse_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp -o seq_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_ci.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_entry_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_ci.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -24871,106 +24682,92 @@ /bin/ln -f .xnetblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xnetblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -cd objects/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=xnetblastcli -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j16 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=xnetblastcli -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_app_util -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_app_util -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_entry_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp: In member function 'void ncbi::objects::CPslData::Initialize(const ncbi::objects::CReaderBase::TReaderLine&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:144:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 144 | if (mBlockCount != mBlockSizes.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 150 | if (mBlockCount != mBlockStartsQ.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 156 | if (mBlockCount != mBlockStartsT.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 92 | mColName + mColScore != -6); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 484 | if (blockSizes.size() != blockCount) { - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 505 | if (blockStarts.size() != blockCount) { - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp: In member function 'virtual void ncbi::objects::CVcfReader::xSetFileFormat(const std::string&, ncbi::objects::CSeq_annot&, bool&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp:332:27: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] + 332 | catch (std::exception except) { + | ^~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -24986,9 +24783,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25004,9 +24801,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25022,9 +24819,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25040,9 +24837,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25058,9 +24855,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25070,22 +24867,44 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -25194,17 +25013,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -25313,6 +25142,120 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +2.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp -o psl_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:37: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 92 | mColName + mColScore != -6); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 484 | if (blockSizes.size() != blockCount) { + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 505 | if (blockStarts.size() != blockCount) { + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': @@ -25321,6 +25264,35 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 | mColName + mColScore != -6); | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:40: @@ -25334,21 +25306,158 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 92 | mColName + mColScore != -6); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] + 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 92 | mColName + mColScore != -6); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetLocation(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:127:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 127 | if (mColStrand == -1) { + | ~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetTitle(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:162:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 162 | if (mColChrom == -1) { + | ~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::Validate(ncbi::objects::CReaderMessageHandler&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { + | ~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:43: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { + | ~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:66: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { + | ~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'void ncbi::objects::CAutoSqlStandardFields::Dump(std::ostream&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:194:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 194 | if (mColChrom != -1) { + | ~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:197:22: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 197 | if (mColSeqStart != -1) { + | ~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:200:21: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 200 | if (mColSeqStop != -1) { + | ~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:203:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 203 | if (mColStrand != -1) { + | ~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:206:18: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 206 | if (mColName != -1) { + | ~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:209:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] + 209 | if (mColScore != -1) { + | ~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_table_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_entry_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25364,9 +25473,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25382,9 +25491,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25400,9 +25509,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25418,9 +25527,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25436,9 +25545,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -25448,76 +25557,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] - 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 92 | mColName + mColScore != -6); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetLocation(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:127:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 127 | if (mColStrand == -1) { - | ~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetTitle(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:162:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 162 | if (mColChrom == -1) { - | ~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::Validate(ncbi::objects::CReaderMessageHandler&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { - | ~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:43: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { - | ~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:66: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { - | ~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'void ncbi::objects::CAutoSqlStandardFields::Dump(std::ostream&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:194:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 194 | if (mColChrom != -1) { - | ~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:197:22: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 197 | if (mColSeqStart != -1) { - | ~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:200:21: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 200 | if (mColSeqStop != -1) { - | ~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:203:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 203 | if (mColStrand != -1) { - | ~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:206:18: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 206 | if (mColName != -1) { - | ~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:209:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare] - 209 | if (mColScore != -1) { - | ~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient_.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:36: @@ -25547,22 +25607,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, @@ -25591,56 +25663,49 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 276 | auto_ptr m_Memeto; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/align_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -4 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/align_ci.cpp -o align_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp -o data_loader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range.cpp -o handle_range.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k blast+-2.12.0+ds/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -WnoIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -25648,7 +25713,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, +4 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/align_ci.cpp -o align_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp -o data_loader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range.cpp -o handle_range.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; @@ -25664,10 +25736,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -25675,25 +25747,27 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:43: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ @@ -25720,14 +25794,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -25736,57 +25802,42 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient_.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 276 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | auto_ptr m_Memeto; +blast+-2.12.0+ds/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -WnoIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/align_ci.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -25794,7 +25845,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -25810,14 +25864,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -25826,77 +25872,58 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const CSourceModParser::SMod*, const CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] - 877 | for (int i=0; i&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - 912 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o +/bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp +ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqalign_util.a +/bin/ln -f .seqalign_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqalign_util.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 276 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_Memeto; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 276 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_Memeto; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | auto_ptr m_Memeto; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ @@ -25915,32 +25942,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o -/bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp -ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqalign_util.a -/bin/ln -f .seqalign_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqalign_util.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -25956,27 +25967,43 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/object_manager.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const CSourceModParser::SMod*, const CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const long unsigned int' [-Wsign-compare] + 877 | for (int i=0; i&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + 912 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26020,19 +26047,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -26046,53 +26063,32 @@ /bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxnetblastcli.so /bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xnetblastcli.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -cd objtools/blast/services/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/services/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services TMPL=blast_services -w -j16 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/object_manager.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/object_manager.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services TMPL=blast_services -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; @@ -26100,24 +26096,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/message_listener.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:57: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -26142,38 +26135,30 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range_map.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/handle_range.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/handle_range_map.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range_map.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:57: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -26198,23 +26183,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26224,24 +26202,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector_ci.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/object_manager.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -26255,15 +26226,47 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path//build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_Data; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | auto_ptr m_OptionsBuilder; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range_map.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/handle_range.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/handle_range_map.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range_map.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26283,10 +26286,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:66: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -26294,19 +26309,20 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26316,24 +26332,33 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_Data; - | ^~~~~~~~ +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/message_listener.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | auto_ptr m_OptionsBuilder; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:66: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26353,19 +26378,46 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector_ci.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp:41: @@ -26398,6 +26450,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: In function 'void ncbi::CheckMTByQueries_DBSize(CRef&, const blast::CBlastOptions&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:1011:18: warning: unused variable 'prog' [-Wunused-variable] + 1011 | EProgram prog = opt.GetProgram(); + | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -26422,18 +26484,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o +/bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp +ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_unit_test_util.a +/bin/ln -f .blast_unit_test_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_unit_test_util.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_ci.cpp:35: @@ -26451,6 +26511,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_chunk_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -26463,12 +26538,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_ci.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -26477,22 +26546,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: In function 'void ncbi::CheckMTByQueries_DBSize(CRef&, const blast::CBlastOptions&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:1011:18: warning: unused variable 'prog' [-Wunused-variable] - 1011 | EProgram prog = opt.GetProgram(); - | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp -o annot_collector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/sh/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:127:15: warning: 'std::string ncbi::s_FindBlastDbDataLoaderName(const std::string&, bool)' defined but not used [-Wunused-function] + 127 | static string s_FindBlastDbDataLoaderName(const string& dbname, bool is_protein) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_chunk_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26512,34 +26582,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp -o annot_collector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/shIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o -/bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp -ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_unit_test_util.a -/bin/ln -f .blast_unit_test_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_unit_test_util.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26547,9 +26592,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_loc_mapper.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26565,22 +26609,8 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26588,8 +26618,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_loc_mapper.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26605,10 +26636,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:127:15: warning: 'std::string ncbi::s_FindBlastDbDataLoaderName(const std::string&, bool)' defined but not used [-Wunused-function] - 127 | static string s_FindBlastDbDataLoaderName(const string& dbname, bool is_protein) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -26616,6 +26656,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o +/bin/rm -f libblast_services.so .libblast_services.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_services.so +/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_services.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -26654,7 +26703,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26662,9 +26713,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26680,38 +26729,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncb/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp: In member function 'virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp:466:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 466 | auto_ptr sub(new CSeq_align_Mapper(GetLocMapper())); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26721,8 +26739,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_graph_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26738,8 +26755,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp: In member function 'virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp:466:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 466 | auto_ptr sub(new CSeq_align_Mapper(GetLocMapper())); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26749,7 +26780,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_graph_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26765,6 +26797,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -26773,7 +26821,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ @@ -26787,39 +26835,13 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:56: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -26835,39 +26857,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_error.cpp -o mod_error.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp -o message_listener.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/line_error.cpp -o line_error.o +/bin/rm -f libxobjread.so .libxobjread.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjread.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:56: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26879,19 +26887,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -26923,6 +26927,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, @@ -26943,39 +26968,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 276 | auto_ptr m_Memeto; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_Memeto; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | auto_ptr m_Memeto; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -27008,59 +27013,51 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +openmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lpub -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjread.so +/bin/ln -f .xobjread.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjread.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27069,34 +27066,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -i-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_saver.cpp -o edit_saver.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o -/bin/rm -f libblast_services.so .libblast_services.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_services.so -/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_services.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 276 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_Memeto; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -27125,13 +27111,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp: In member function 'virtual void ncbi::objects::CScopeTransaction_Impl::Commit()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp:167:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 167 | auto_ptr cmd(new CMultEditCommand); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27140,21 +27119,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o -/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp -ar cr libblast_app_util.a blast_app_util.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_app_util.a -/bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_app_util.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -27176,14 +27153,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ --format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_error.cpp -o mod_error.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp -o message_listener.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/line_error.cpp -o line_error.o -/bin/rm -f libxobjread.so .libxobjread.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjread.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -27199,6 +27181,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp: In member function 'virtual void ncbi::objects::CScopeTransaction_Impl::Commit()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp:167:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 167 | auto_ptr cmd(new CMultEditCommand); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27207,7 +27205,38 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +i-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_saver.cpp -o edit_saver.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; @@ -27243,6 +27272,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o +/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp +ar cr libblast_app_util.a blast_app_util.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_app_util.a +/bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_app_util.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27303,12 +27349,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -openmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lpub -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjread.so -/bin/ln -f .xobjread.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjread.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27343,21 +27383,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_finder.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edits_db_saver.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27382,6 +27407,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_finder.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split_parser.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -27409,126 +27449,126 @@ /bin/ln -f .xobjmgr.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objmgr/util/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +cd objmgr/util/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/dustmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null +cd algo/dustmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/segmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/segmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objmgr/split/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objmgr/split/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util TMPL=util -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask TMPL=xalgodustmask -w -j16 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util TMPL=util -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask TMPL=xalgosegmask -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o -/usr/bin/g++ -std=/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split TMPL=id2_split -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/shmake[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask TMPL=xalgosegmask -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask TMPL=xalgodustmask -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split TMPL=id2_split -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp -o indexer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp -o create_defline.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o +/usr/bin/g++ -std=make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpk_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkdpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/repr_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 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-I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp -o objutil.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o -/usr/bin/g++ -std=gnu++14 -c -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/g/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/id_range.cpp -o id_range.o +/usr/bin/g++ -std=gnu++14 -c -gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/shg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/id_range.cpp -o id_range.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/size.cpp -o size.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/repr/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] 51 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ @@ -27585,6 +27625,40 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, CSeqDBGiList::STaxIdsOids&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1094:52: warning: comparison of integer expressions of different signedness: 'Int4' {aka 'int'} and 'unsigned int' [-Wsign-compare] + 1094 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF) + | ~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const std::string&, std::vector >&, std::vector >&, std::vector&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] + 972 | int found_short(-1); + | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -27598,41 +27672,38 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const std::string&, std::vector >&, std::vector >&, std::vector&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] - 972 | int found_short(-1); - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:88:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const std::string&)' defined but not used [-Wunused-function] + 88 | static void s_SeqDB_FileNotFound(const string & fname) + | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/rwstream.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:62: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -27657,25 +27728,31 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask/segmask.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -27685,54 +27762,49 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef_source_desc.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -27740,27 +27812,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -27777,33 +27834,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function 'void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, CSeqDBGiList::STaxIdsOids&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1094:52: warning: comparison of integer expressions of different signedness: 'Int4' {aka 'int'} and 'unsigned int' [-Wsign-compare] - 1094 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF) - | ~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, @@ -27844,19 +27874,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -27884,42 +27913,36 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:88:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const std::string&)' defined but not used [-Wunused-function] - 88 | static void s_SeqDB_FileNotFound(const string & fname) - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -27935,15 +27958,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/rwstream.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -27977,82 +28007,11 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/strsearch.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 214 | std::auto_ptr< CSymDustMasker::TMaskList > - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, size_type, size_type)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:218:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 218 | std::auto_ptr< TMaskList > res( new TMaskList ); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:288:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 288 | std::auto_ptr< CSymDustMasker::TMaskList > - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:299:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 299 | std::auto_ptr< TMaskList > res = (*this)( seq ); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:313:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 313 | std::auto_ptr< TMaskList > res = (*this)( seq ); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -28065,14 +28024,18 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -28080,32 +28043,26 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:62: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28113,43 +28070,36 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -28166,10 +28116,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:69: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28177,25 +28126,31 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask/segmask.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, @@ -28207,15 +28162,21 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -28223,6 +28184,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -28232,11 +28199,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processors.hpp:32, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -28253,51 +28236,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -28319,27 +28266,44 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 214 | std::auto_ptr< CSymDustMasker::TMaskList > + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, size_type, size_type)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:218:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 218 | std::auto_ptr< TMaskList > res( new TMaskList ); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:288:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 288 | std::auto_ptr< CSymDustMasker::TMaskList > + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:299:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 299 | std::auto_ptr< TMaskList > res = (*this)( seq ); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:313:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 313 | std::auto_ptr< TMaskList > res = (*this)( seq ); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28347,20 +28311,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -28370,6 +28327,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ @@ -28377,17 +28349,41 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -28401,7 +28397,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:69: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28410,7 +28406,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -28428,8 +28424,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processors.hpp:32, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ @@ -28442,94 +28437,81 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/strsearch.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:67: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28544,14 +28526,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ @@ -28564,11 +28539,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -28576,7 +28549,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:67: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -28592,38 +28565,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const CBioseq_Handle&, TWeights&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] - 363 | } catch (CObjmgrUtilException) { - | ^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -28640,6 +28594,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/unicode.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28652,16 +28639,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -28669,19 +28658,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1540:50: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1540 | if ((*partial_ranges)[num_ranges - 1].second > base_length) { /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::x_GetSequence(int, const char**) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1778:24: warning: comparing the result of pointer addition '((* buffer) + -1)' and NULL [-Waddress] - 1778 | if (! (*buffer - 1)) return -1; - | ~~~~~~~~~^~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28694,6 +28673,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28706,10 +28694,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2969:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] - 2969 | TIndx map_end = 0; - | ^~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp:59: @@ -28725,6 +28709,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -28737,106 +28731,146 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 612 | } catch (CException) { - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static ncbi::CObjectIStream* ncbi::objects::CProcessor_ID2::x_OpenDataStream(const ncbi::objects::CID2_Reply_Data&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1791:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1791 | auto_ptr reader(new COSSReader(data.GetData())); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1792:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1792 | auto_ptr stream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1815:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1815 | auto_ptr in; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::x_ReadData(const ncbi::objects::CID2_Reply_Data&, const ncbi::CObjectInfo&, size_t&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1825 | auto_ptr in(x_OpenDataStream(data)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 612 | } catch (CException) { + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::DumpDataAsText(const ncbi::objects::CID2_Reply_Data&, ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1860:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1860 | auto_ptr in(x_OpenDataStream(data)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:86: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1861 | auto_ptr out(CObjectOStream::Open(eSerial_AsnText, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const CBioseq_Handle&, TWeights&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] + 363 | } catch (CObjmgrUtilException) { + | ^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1540:50: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1540 | if ((*partial_ranges)[num_ranges - 1].second > base_length) { +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1824:61: required from here +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::x_GetSequence(int, const char**) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1778:24: warning: comparing the result of pointer addition '((* buffer) + -1)' and NULL [-Waddress] + 1778 | if (! (*buffer - 1)) return -1; + | ~~~~~~~~~^~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/unicode.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2969:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] + 2969 | TIndx map_end = 0; + | ^~~~~~~ +are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARG/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static ncbi::CObjectIStream* ncbi::objects::CProcessor_ID2::x_OpenDataStream(const ncbi::objects::CID2_Reply_Data&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1791:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1791 | auto_ptr reader(new COSSReader(data.GetData())); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1792:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1792 | auto_ptr stream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1815:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1815 | auto_ptr in; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::x_ReadData(const ncbi::objects::CID2_Reply_Data&, const ncbi::CObjectInfo&, size_t&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1825 | auto_ptr in(x_OpenDataStream(data)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::DumpDataAsText(const ncbi::objects::CID2_Reply_Data&, ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1860:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1860 | auto_ptr in(x_OpenDataStream(data)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1861 | auto_ptr out(CObjectOStream::Open(eSerial_AsnText, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1824:61: required from here -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:86: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:89: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28858,27 +28892,6 @@ /bin/ln -f .xalgosegmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgosegmask.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:89: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp: In function 'ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, TS2PFlags, ncbi::objects::CScope*, int*)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:703:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 703 | } catch (CObjmgrUtilException) { @@ -28918,16 +28931,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const std::string&)' defined but not used [-Wunused-function] 1114 | static bool s_IsValidAccession(const string& acc) | ^~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp -o symdust.o -/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgodustmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC symdust.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgodustmask.so -/bin/ln -f .xalgodustmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgodustmask.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:54: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28947,6 +28951,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3599:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + 3599 | for (int i = 0; i < sizeof (mixedTags); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3676:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 3676 | for (int i = 0; i < str.length(); i++) { + | ~~^~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp -o symdust.o +/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgodustmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC symdust.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgodustmask.so +/bin/ln -f .xalgodustmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgodustmask.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3957:16: required from here /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3501:43: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] @@ -28955,7 +28976,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = CSeqVector; std::string = std::__cxx11::basic_string]': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3985:16: required from here /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3501:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:44: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28984,24 +29005,45 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:3966:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 3966 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3599:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - 3599 | for (int i = 0; i < sizeof (mixedTags); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3676:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 3676 | for (int i = 0; i < str.length(); i++) { - | ~~^~~~~~~~~~~~~~ Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp -o autodef.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29009,7 +29051,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef_source_desc.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29025,10 +29068,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29036,10 +29079,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29065,18 +29105,16 @@ | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29094,7 +29132,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29105,7 +29143,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29121,22 +29159,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] - 1033 | bool added = false, rval = false; - | ^~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29152,6 +29188,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] + 1033 | bool added = false, rval = false; + | ^~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, @@ -29185,39 +29225,39 @@ /bin/ln -f .seqdb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o @@ -29344,7 +29384,8 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -29358,8 +29399,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -29371,30 +29411,11 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ - /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o -/bin/rm -f libid2_split.so .libid2_split.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libid2_split.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid2_split.so -/bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id2_split.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] - 295 | unsigned int num_threads = GetCpuCount(); - | ~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here - 479 | unsigned int GetCpuCount(void) - | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29404,21 +29425,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29427,8 +29435,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29440,7 +29448,19 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29496,8 +29516,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29509,7 +29529,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29525,11 +29545,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ + /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o +/bin/rm -f libid2_split.so .libid2_split.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libid2_split.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid2_split.so +/bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id2_split.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29537,10 +29566,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq__.hpp:1, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -29556,6 +29587,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddPdb(int, const ncbi::objects::CSeq_id&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:659:9: warning: unused variable 'len' [-Wunused-variable] + 659 | int len = short_id.size(); + | ^~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, @@ -29579,6 +29614,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] + 295 | unsigned int num_threads = GetCpuCount(); + | ~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here + 479 | unsigned int GetCpuCount(void) + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -29591,40 +29635,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq__.hpp:1, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -29644,25 +29662,40 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddPdb(int, const ncbi::objects::CSeq_id&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:659:9: warning: unused variable 'len' [-Wunused-variable] - 659 | int len = short_id.size(); - | ^~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, @@ -29697,6 +29730,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:45: @@ -29743,53 +29783,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ -oducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o -/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp -ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.a -/bin/ln -f .ncbi_xreader-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.so -/bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp @@ -29799,91 +29792,92 @@ /bin/ln -f .xobjutil.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -cd objtools/seqmasks_io/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/dbindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/alnmgr/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/seqmasks_io/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd algo/blast/dbindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/alnmgr/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/edit/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/edit/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j16 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr TMPL=alnmgr -w -j16 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr TMPL=alnmgr -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit TMPL=edit -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit TMPL=edit -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o @@ -29891,9 +29885,15 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=.make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=.make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp -o promote.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp -o field_handler.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp -o apply_object.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=fomake[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o @@ -29901,27 +29901,20 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp -o promote.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp -o field_handler.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp -o apply_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=foformat-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.crmat-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=rmat-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-paIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-paformat-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -30031,7 +30024,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -30140,6 +30133,53 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +oducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o +/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp +/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp +ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.a +/bin/ln -f .ncbi_xreader-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.so +/bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; @@ -30201,111 +30241,35 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30321,24 +30285,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:153:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'long int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 153 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'virtual void CSeqDBPerfApp::Init()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:285:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 285 | auto_ptr arg_desc(new CArgDescriptions); @@ -30355,10 +30301,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb.so +/bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/mail_report.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30366,7 +30324,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30382,70 +30340,61 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 76 | match1->m_ChainScore == match2->m_ChainScore && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 77 | match1->m_Score > match2->m_Score || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, TAddFlags)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 192 | (aln_seq1->m_StrandScore > 0 && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 193 | strand1 == eNa_strand_minus || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 196 | aln_seq2->m_StrandScore > 0 && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 197 | strand2 == eNa_strand_minus || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 198 | aln_seq2->m_StrandScore < 0 && + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ + 199 | strand2 != eNa_strand_minus)) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30453,7 +30402,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30469,53 +30421,26 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gb_block_field.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30523,19 +30448,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30572,27 +30488,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -30605,18 +30500,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/loc_edit.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30634,8 +30536,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30644,9 +30546,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30662,9 +30564,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gene_info_reader +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/dblink_field.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/dblink_field.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30675,16 +30585,14 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag_.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/dblink_field.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/loc_edit.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30692,10 +30600,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30728,7 +30633,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30737,9 +30643,27 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30757,8 +30681,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/text_desc_field.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30766,56 +30690,43 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -30830,11 +30741,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30842,10 +30749,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30898,7 +30802,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30913,16 +30817,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here @@ -30934,18 +30829,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:45: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30953,7 +30842,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -30969,10 +30863,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/dblink_field.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/dblink_field.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30980,10 +30885,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/dblink_field.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31005,9 +30909,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:47: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31015,10 +30922,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31034,27 +30943,26 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31062,13 +30970,25 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31078,37 +30998,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31131,15 +31047,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31155,20 +31074,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -31181,10 +31086,28 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] + 1210 | if (start_its_i->second->first != -1) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/cds_fix.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqid_comp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_tests.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_stats.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_converters.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31192,7 +31115,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31208,10 +31134,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31219,7 +31144,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31229,16 +31157,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ESegmentTrimFlag)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -31251,6 +31173,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, @@ -31262,26 +31193,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -31289,10 +31207,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31308,35 +31223,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/includIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -e/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31355,6 +31244,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/text_desc_field.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -31367,63 +31271,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 52 | objects::CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 52 | objects::CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gene_info_reader -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here - 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ESegmentTrimFlag)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here - 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqid_comp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_tests.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_stats.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_converters.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gb_block_field.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31431,10 +31282,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31450,23 +31298,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] - 1210 | if (start_its_i->second->first != -1) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31482,55 +31328,58 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 311 | if (plus && prev_start_plus_len < start || - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/cds_fix.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31546,74 +31395,45 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function 'static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 76 | match1->m_ChainScore == match2->m_ChainScore && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 77 | match1->m_Score > match2->m_Score || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'virtual void ncbi::objects::CCacheWriter::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:66:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 66 | auto_ptr id_params - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 68 | auto_ptr blob_params - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp: In member function 'void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, TAddFlags)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 192 | (aln_seq1->m_StrandScore > 0 && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 193 | strand1 == eNa_strand_minus || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 196 | aln_seq2->m_StrandScore > 0 && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 197 | strand2 == eNa_strand_minus || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 198 | aln_seq2->m_StrandScore < 0 && - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ - 199 | strand2 != eNa_strand_minus)) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'void ncbi::objects::CCacheWriter::WriteSeq_ids(const std::string&, const ncbi::objects::CLoadLockSeqIds&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:336:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 336 | auto_ptr writer - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:532:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 532 | auto_ptr m_Writer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:533:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 533 | auto_ptr m_Stream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31621,12 +31441,19 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31642,151 +31469,134 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 311 | if (plus && prev_start_plus_len < start || + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb.so -/bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In function 'ncbi::objects::SCacheInfo::TParams* ncbi::objects::GetCacheParams(const SCacheInfo::TParams*, SCacheInfo::EReaderOrWriter, SCacheInfo::EIdOrBlob)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1647:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1647 | auto_ptr section - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In static member function 'static ncbi::ICache* ncbi::objects::SCacheInfo::CreateCache(const TParams*, EReaderOrWriter, EIdOrBlob)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1676:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1676 | auto_ptr cache_params - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:57: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In member function 'virtual void ncbi::objects::CCacheReader::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1696:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1696 | auto_ptr id_params - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1698:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1698 | auto_ptr blob_params - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -31799,68 +31609,61 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'virtual void ncbi::objects::CCacheWriter::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:66:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 66 | auto_ptr id_params + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 68 | auto_ptr blob_params | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'void ncbi::objects::CCacheWriter::WriteSeq_ids(const std::string&, const ncbi::objects::CLoadLockSeqIds&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:336:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 336 | auto_ptr writer + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -31870,32 +31673,87 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:532:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 532 | auto_ptr m_Writer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:533:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 533 | auto_ptr m_Stream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 52 | objects::CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 52 | objects::CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -31924,18 +31782,88 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here + 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here + 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -31948,12 +31876,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -31973,118 +31907,90 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:940:17: note: declared here 940 | static void TranslateCdregion(string& prot, | ^~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -pp -o alnsegments.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] - 306 | unsigned long tmp; - | ^~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In function 'ncbi::objects::SCacheInfo::TParams* ncbi::objects::GetCacheParams(const SCacheInfo::TParams*, SCacheInfo::EReaderOrWriter, SCacheInfo::EIdOrBlob)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1647:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1647 | auto_ptr section + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In static member function 'static ncbi::ICache* ncbi::objects::SCacheInfo::CreateCache(const TParams*, EReaderOrWriter, EIdOrBlob)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1676:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1676 | auto_ptr cache_params | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In member function 'virtual void ncbi::objects::CCacheReader::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1696:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1696 | auto_ptr id_params + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1698:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1698 | auto_ptr blob_params | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(TSeqData&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] - 658 | string idstr = objects::sequence::GetTitle( bsh ); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here - 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'void ncbi::blastdbindex::COffsetData_Factory::Save(ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1409:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1409 | std::auto_ptr< CNcbiOfstream > stats; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In static member function 'static void ncbi::blastdbindex::CDbIndex_Factory::do_create_1_2(ncbi::blastdbindex::CSequenceIStream&, const std::string&, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum&, ncbi::blastdbindex::CDbIndex::TSeqNum&, const ncbi::blastdbindex::CDbIndex::SOptions&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1665:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1665 | std::auto_ptr< COffsetList::CDataPool > pool( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -32097,6 +32003,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] + 306 | unsigned long tmp; + | ^~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, @@ -32107,6 +32017,32 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -32119,7 +32055,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': +pp -o alnsegments.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32132,6 +32075,83 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_perf +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(TSeqData&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] + 658 | string idstr = objects::sequence::GetTitle( bsh ); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here + 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'void ncbi::blastdbindex::COffsetData_Factory::Save(ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1409:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1409 | std::auto_ptr< CNcbiOfstream > stats; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In static member function 'static void ncbi::blastdbindex::CDbIndex_Factory::do_create_1_2(ncbi::blastdbindex::CSequenceIStream&, const std::string&, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum&, ncbi::blastdbindex::CDbIndex::TSeqNum&, const ncbi::blastdbindex::CDbIndex::SOptions&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1665:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1665 | std::auto_ptr< COffsetList::CDataPool > pool( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, @@ -32165,14 +32185,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -th/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o +ix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o @@ -32183,109 +32196,58 @@ /bin/ln -f .writedb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.writedb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_perf -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seqdb_demo -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_demo -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +th/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -32395,23 +32357,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ - -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o -/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqmasks_io.so -/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqmasks_io.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:173:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 173 | if (descr_insert_order[index] >= size()) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32520,21 +32468,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -cd algo/winmask/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32550,9 +32495,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32568,9 +32513,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32586,9 +32531,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32604,9 +32549,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32622,9 +32567,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32634,26 +32579,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask TMPL=xalgowinmask -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seqdb_demo +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_demo +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32669,9 +32613,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32687,9 +32631,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32705,9 +32649,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32723,9 +32667,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32741,9 +32685,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -32753,20 +32697,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REEIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -32884,10 +32823,53 @@ /bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_services_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' + -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o +/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqmasks_io.so +/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqmasks_io.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +cd algo/winmask/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask TMPL=xalgowinmask -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REEIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:57: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -32980,7 +32962,8 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33072,10 +33055,9 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33167,9 +33149,10 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33261,9 +33244,9 @@ 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33354,11 +33337,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33449,11 +33438,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33733,100 +33728,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:173:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 173 | if (descr_insert_order[index] >= size()) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1854:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 1854 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { @@ -33862,6 +33767,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:3046:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] 3046 | else if (seg_start >= cut_from && | ~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here + 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -33972,233 +33887,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here - 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ URCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp -o external_annots.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagaIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_ci.hpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o -/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp -ar cr libncbi_xreader_id2.a reader_id2.o -/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_id2.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.a -/bin/ln -f .ncbi_xreader_id2-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.so -/bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/source_edit.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagaIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -NTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -34289,36 +34002,143 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/mail_report.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_ci.hpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/source_edit.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -34409,6 +34229,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -34421,38 +34242,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const ncbi::IAlnExplorer::TSignedRange&, bool) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +NTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/seqid_guesser.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -34460,17 +34282,26 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/score_builder_base.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -34561,30 +34392,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -34604,22 +34423,6 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -34634,18 +34437,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const ncbi::IAlnExplorer::TSignedRange&, bool) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -34661,8 +34456,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -34755,9 +34550,8 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -34765,9 +34559,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -34785,17 +34577,10 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/seqid_guesser.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -34809,14 +34594,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -34829,6 +34606,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gap_trim.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -34847,11 +34639,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 259 | for (int j = i + 1; j < spans.size(); j++) + | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -34859,9 +34657,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -34881,35 +34678,29 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -producible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -34921,22 +34712,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -34952,31 +34732,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -34992,12 +34762,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, @@ -35028,22 +34792,30 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/external_annots.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -35051,9 +34823,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -35061,8 +34831,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -35078,52 +34849,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:166:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 166 | auto_ptr mask(new TMaskList); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:171:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 171 | auto_ptr window_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 259 | for (int j = i + 1; j < spans.size(); j++) - | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/score_builder_base.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -35139,15 +34892,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/external_annots.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -35157,82 +34917,80 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gap_trim.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o -/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so -/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:57: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:166:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 166 | auto_ptr mask(new TMaskList); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:171:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 171 | auto_ptr window_ptr | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35323,24 +35081,100 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/remote_updater.hpp:129:4: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 129 | auto_ptr m_taxClient; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Org_ref_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Org_ref.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon3/itaxon3.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon3/taxon3.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:292:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 292 | auto_ptr m_taxon; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:293:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 293 | auto_ptr m_cache; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(FLogger, ncbi::objects::CSeq_entry_EditHandle&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:604:31: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] + 604 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it); + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:296:6: note: declared here + 296 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& obj) + | ^~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o +/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp +ar cr libncbi_xreader_id2.a reader_id2.o +/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_id2.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.a +/bin/ln -f .ncbi_xreader_id2-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.so +/bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, @@ -35373,9 +35207,50 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:32: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35466,24 +35341,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:57: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, @@ -35578,70 +35445,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/remote_updater.hpp:129:4: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 129 | auto_ptr m_taxClient; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Org_ref_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Org_ref.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon3/itaxon3.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon3/taxon3.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:292:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 292 | auto_ptr m_taxon; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:293:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 293 | auto_ptr m_cache; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -opt.cpp -o seq_masker_ostat_opt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-coIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: @@ -35735,21 +35539,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp: In member function 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(FLogger, ncbi::objects::CSeq_entry_EditHandle&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:604:31: warning: 'void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(FLogger, ncbi::objects::CSeqdesc&)' is deprecated [-Wdeprecated-declarations] - 604 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it); - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:296:6: note: declared here - 296 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& obj) - | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +opt.cpp -o seq_masker_ostat_opt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-co/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -35867,16 +35672,51 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o +/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so +/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so +/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: @@ -35886,18 +35726,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:50, @@ -35992,35 +35820,36 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o -/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp -ar cr libncbi_xreader_id1.a reader_id1.o -/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.a -/bin/ln -f .ncbi_xreader_id1-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.so -/bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -36111,37 +35940,147 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, @@ -36157,33 +36096,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:32: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -36207,12 +36119,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -36225,22 +36131,99 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 198 | auto_ptr m_Stream; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, @@ -36252,7 +36235,11 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -36268,13 +36255,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function 'ncbi::CRef s_GetScope()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:558:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 558 | auto_ptr ois - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o +/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp +/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp +ar cr libncbi_xreader_id1.a reader_id1.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.a +/bin/ln -f .ncbi_xreader_id1-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.so +/bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o +/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastdb_format.so +/bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastdb_format.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: @@ -36284,14 +36291,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function 'ncbi::CRef s_GetScope()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:558:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 558 | auto_ptr ois | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -36302,53 +36314,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CBuildDatabase_WGS_gap::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2825 | auto_ptr ois +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o -/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastdb_format.so -/bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastdb_format.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:38: -In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', - inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1811:16, - inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1790:16: warning: '*(__vector(2) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_From))' may be used uninitialized [-Wmaybe-uninitialized] - 1790 | return m_From; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here - 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); - | ^~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)' defined but not used [-Wunused-function] - 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) - | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -36457,19 +36437,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so -/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -36578,6 +36548,56 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:63: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 198 | auto_ptr m_Stream; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CBuildDatabase_WGS_gap::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2825 | auto_ptr ois + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o @@ -36593,59 +36613,37 @@ /bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_cache.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:39: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37: +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)' defined but not used [-Wunused-function] + 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) + | ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:38: +In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', + inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1811:16, + inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1790:16: warning: '*(__vector(2) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_From))' may be used uninitialized [-Wmaybe-uninitialized] + 1790 | return m_From; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here + 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); + | ^~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -36866,44 +36864,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_config.hpp:46, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:36: @@ -36920,18 +36880,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:39: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -36947,30 +36922,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -36995,6 +36964,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -37004,25 +36979,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function 'virtual void ncbi::CMkIndexApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 67 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, @@ -37034,7 +36991,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -37052,7 +37009,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37071,49 +37028,43 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -37146,7 +37097,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37165,18 +37116,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: @@ -37192,16 +37131,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -37209,53 +37166,94 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function 'virtual void ncbi::CMkIndexApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 67 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -37271,18 +37269,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:109:21: note: 'gap_start' was declared here 109 | TSeqPos gap_start; | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -37295,32 +37303,26 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:51: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ @@ -37333,25 +37335,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -37365,17 +37348,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -37387,29 +37376,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -37423,23 +37389,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o -/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalnmgr.so -/bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalnmgr.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37452,7 +37407,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -37468,6 +37423,41 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ @@ -37480,55 +37470,97 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:130:39: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] 130 | string id_str = sequence::GetTitle( bsh ); @@ -37536,19 +37568,20 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -37556,27 +37589,58 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o +/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalnmgr.so +/bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalnmgr.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -37589,6 +37653,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp: In member function 'void ncbi::objects::CGBDataLoader_Native::x_CreateDriver(const ncbi::objects::CGBLoaderParams&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:291:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 291 | auto_ptr app_params; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: @@ -37625,45 +37696,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp: In member function 'void ncbi::objects::CGBDataLoader_Native::x_CreateDriver(const ncbi::objects::CGBLoaderParams&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:291:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 291 | auto_ptr app_params; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makembindex -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makembindex -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestNoFormatSpecifier::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:54:41: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] 54 | BOOST_REQUIRE_THROW(CSeqFormatter f(format_spec, db, std::cout), @@ -37802,6 +37834,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter | ^~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makembindex +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makembindex +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' mpile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o @@ -37815,17 +37855,17 @@ /bin/ln -f .xalgowinmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgowinmask.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -cd algo/blast/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api TMPL=xblast -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api TMPL=xblast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o @@ -37960,17 +38000,17 @@ /bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjedit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -cd objtools/cleanup/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/cleanup/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup TMPL=cleanup -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup TMPL=cleanup -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o @@ -37978,11 +38018,19 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blasIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blasmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o blastdb_format_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_format_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37990,7 +38038,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38006,22 +38054,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o blastdb_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/disc_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/disc_nucl_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38052,7 +38093,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38067,6 +38110,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -38079,23 +38128,36 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/util_misc.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38133,36 +38195,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38182,10 +38223,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastx_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38217,20 +38255,21 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastn_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38252,7 +38291,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_nucl_options.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/disc_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38297,15 +38337,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/rpstblastn_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38313,25 +38361,14 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/util_misc.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastn_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -38344,6 +38381,28 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -38356,14 +38415,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38379,27 +38442,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38442,9 +38492,8 @@ | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38452,7 +38501,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38468,26 +38517,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38502,39 +38538,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_prot_options.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -38547,28 +38557,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, @@ -38589,22 +38577,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastx_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38612,7 +38592,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38628,12 +38611,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp:32: @@ -38665,8 +38642,9 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/capitalization_string.hpp:32, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38674,7 +38652,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38690,13 +38668,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -pecs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: @@ -38718,22 +38690,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38749,25 +38712,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:911:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 911 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:950:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 950 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:977:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 977 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/capitalization_string.hpp:32, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38783,13 +38739,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ --D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:38: @@ -38808,50 +38758,7 @@ /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreaderIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here @@ -38863,6 +38770,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:911:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 911 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:950:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 950 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:977:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 977 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -38875,40 +38794,28 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +pecs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_autoinit.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -38933,60 +38840,61 @@ /bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_genbank.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/align_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/simple/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/align_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/dustmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/simple/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/winmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/dustmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd app/winmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format TMPL=align_format -w -j16 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format TMPL=align_format -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple TMPL=xobjsimple -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker TMPL=winmasker -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker TMPL=dustmasker -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker TMPL=dustmasker -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple TMPL=xobjsimple -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker TMPL=winmasker -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o @@ -38994,21 +38902,28 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp -o showalign.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp -o tabular.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o -/usr/bin/g++ -std=gnu++14 -c/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/usr/bin/g++ -std=gnu++14 -cmake[5]: warning: -j15 forced in submake: resetting jobserver mode. +-D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/main.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39229,8 +39144,8 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/main.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39339,6 +39254,38 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, @@ -39434,11 +39381,23 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39565,10 +39524,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:54: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:77: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39659,10 +39618,47 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39771,26 +39767,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -39809,16 +39785,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ @@ -39838,6 +39822,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39847,29 +39832,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUIL of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ @@ -39880,51 +39868,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' +/build/reproducible-DINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible b ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39936,18 +39900,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:77: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + | ^~~~~~~~~uilds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' @@ -39959,12 +39912,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 1~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39977,12 +39932,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: ma77 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39995,12 +39952,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +cro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40013,12 +39970,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40031,9 +39988,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:63: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -40200,6 +40159,52 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_autoinit.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:39: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -40212,14 +40217,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] - 2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4167:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - 4167 | idx < sizeof(transformations)/sizeof(transformations[0]); - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, @@ -40239,9 +40236,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -40264,6 +40258,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -40276,6 +40273,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] + 2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4167:21: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + 4167 | idx < sizeof(transformations)/sizeof(transformations[0]); + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In function 'typename TMapType::const_iterator ncbi::objects::s_FindInMapAsPrefix(const std::string&, const TMapType&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:1187:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1187 | auto_ptr temp_str; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -40310,13 +40322,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In function 'typename TMapType::const_iterator ncbi::objects::s_FindInMapAsPrefix(const std::string&, const TMapType&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:1187:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1187 | auto_ptr temp_str; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -40343,11 +40348,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40355,7 +40357,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40373,8 +40377,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/vectorscreen.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40382,7 +40386,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/html/html.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40401,9 +40408,12 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/rpstblastn_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40412,9 +40422,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40433,8 +40443,11 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40442,27 +40455,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple/simple_om.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40480,9 +40473,11 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40490,40 +40485,36 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40539,41 +40530,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple/simple_om.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40581,7 +40564,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40631,10 +40615,9 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40642,7 +40625,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40658,25 +40645,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp: In function 'BlastSeqSrc* ncbi::blast::MultiSeqBlastSeqSrcInit(TSeqLocVector&, EBlastProgramType, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:562:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 562 | auto_ptr args - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40692,18 +40672,11 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o -/usr/bin/g++ -std=gnu++14 -c -Wall -WIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -40711,32 +40684,28 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40746,12 +40715,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -40764,6 +40727,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ @@ -40776,37 +40745,42 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40843,10 +40817,20 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -40862,129 +40846,104 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function 'ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp:103:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | std::auto_ptr< TMaskList > result = duster_( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/vectorscreen.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/html/html.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41000,21 +40959,32 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41037,14 +41007,18 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41060,79 +41034,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41142,9 +41046,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function 'ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp:103:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | std::auto_ptr< TMaskList > result = duster_( + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41154,66 +41059,64 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp: In function 'BlastSeqSrc* ncbi::blast::MultiSeqBlastSeqSrcInit(TSeqLocVector&, EBlastProgramType, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:562:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 562 | auto_ptr args | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/taxFormat.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41221,12 +41124,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1__.hpp:1, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41242,18 +41140,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; @@ -41279,21 +41165,32 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -41306,47 +41203,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41375,12 +41250,26 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o +/usr/bin/g++ -std=gnu++14 -c -Wall -WIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | @@ -41394,49 +41283,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::ReadSeqalignSet(const std::string&, ncbi::objects::CSeq_align_set&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 516 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::WriteSeqalignSet(const std::string&, const ncbi::objects::CSeq_align_set&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 522 | auto_ptr asn_out(CObjectOStream::Open(fname, eSerial_AsnText)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/taxFormat.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41444,8 +41326,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1__.hpp:1, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41461,6 +41347,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -41475,6 +41375,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:64: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -41489,6 +41395,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp: In member function 'virtual void ncbi::CWinMaskApplication::Init()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); @@ -41496,6 +41409,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp: In member function 'virtual int ncbi::CWinMaskApplication::Run()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:252:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 252 | auto_ptr< CSeqMasker::TMaskList > mask_info( theMasker( data ) ); @@ -41503,17 +41422,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:257:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 257 | auto_ptr< CSeqMasker::TMaskList > dust_info( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:70: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41521,105 +41462,81 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:93:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 93 | auto_ptr CAlignFormatUtil::m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:55: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::ReadSeqalignSet(const std::string&, ncbi::objects::CSeq_align_set&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 516 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::WriteSeqalignSet(const std::string&, const ncbi::objects::CSeq_align_set&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 522 | auto_ptr asn_out(CObjectOStream::Open(fname, eSerial_AsnText)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static bool ncbi::align_format::CAlignFormatUtil::SortHitByPercentIdentityDescendingEx(const ncbi::CRef&, const ncbi::CRef&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1448:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1448 | auto_ptr seqSetInfo1( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info1)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:93:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 93 | auto_ptr CAlignFormatUtil::m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1449 | auto_ptr seqSetInfo2( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info2)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41663,82 +41580,60 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:301:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 301 | std::auto_ptr< duster_type::TMaskList > res = GetDustMasks_SkipNs(data, level, window, linker); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -no-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=for/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static bool ncbi::align_format::CAlignFormatUtil::SortHitByPercentIdentityDescendingEx(const ncbi::CRef&, const ncbi::CRef&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1448:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1448 | auto_ptr seqSetInfo1( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info1)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1449 | auto_ptr seqSetInfo2( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info2)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfo(const ncbi::objects::CSeq_align&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1465:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1465 | auto_ptr score_info(new SScoreInfo); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfoForTable(const ncbi::objects::CSeq_align_set&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1489:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1489 | auto_ptr score_info(new SScoreInfo); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1491:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1491 | auto_ptr seqSetInfo( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(aln)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:301:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 301 | std::auto_ptr< duster_type::TMaskList > res = GetDustMasks_SkipNs(data, level, window, linker); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41756,12 +41651,44 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:70: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41775,32 +41702,80 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(SAlnRowInfo*, ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1926:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1926 | auto_ptr out2(CObjectOStream::Open(eSerial_AsnText, out)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 2104 | } catch (CException e){ + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfo(const ncbi::objects::CSeq_align&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1465:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1465 | auto_ptr score_info(new SScoreInfo); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfoForTable(const ncbi::objects::CSeq_align_set&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1489:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1489 | auto_ptr score_info(new SScoreInfo); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1491:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1491 | auto_ptr seqSetInfo( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(aln)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const std::string&, std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + | ~~^~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp @@ -41810,6 +41785,41 @@ /bin/ln -f .xobjsimple.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjsimple.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +no-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=forIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -41823,10 +41833,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41834,8 +41844,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41851,20 +41861,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(SAlnRowInfo*, ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1926:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1926 | auto_ptr out2(CObjectOStream::Open(eSerial_AsnText, out)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 2104 | } catch (CException e){ - | ^ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -41898,6 +41894,65 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o dustmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/dustmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -41905,13 +41960,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const std::string&, std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -41927,10 +41975,10 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_db_adapter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41938,7 +41986,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -41954,13 +42003,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o windowmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/windowmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_db_adapter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41968,8 +42024,39 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:38: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42038,62 +42125,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o windowmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/windowmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42101,10 +42151,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42120,17 +42167,40 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ mat-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/version.cpp -o version.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:125:20: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] + 125 | reader.Read(false, true); + | ~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here + 215 | void Read( + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] + 376 | while (k < m_Msa->dimensions->query_length && + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42140,7 +42210,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42187,14 +42258,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie main.o dust_mask_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o dustmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/dustmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -42202,7 +42265,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42229,44 +42293,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:125:20: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] - 125 | reader.Read(false, true); - | ~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here - 215 | void Read( - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] - 376 | while (k < m_Msa->dimensions->query_length && - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42293,7 +42327,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +-D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:39, @@ -42324,35 +42364,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); @@ -42371,8 +42382,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42396,6 +42406,28 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -42427,14 +42459,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -api/uniform_search.cpp -o uniform_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp -o local_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp -o query_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, @@ -42464,11 +42489,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +api/uniform_search.cpp -o uniform_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp -o local_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp -o query_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/uniform_search.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42476,7 +42509,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42492,16 +42526,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ @@ -42520,43 +42544,31 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'virtual void ncbi::blast::CBlastPrelimSearch::SetNumberOfThreads(size_t)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:117:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr opts_memento - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'int ncbi::blast::CBlastPrelimSearch::x_LaunchMultiThreadedSearch(ncbi::blast::SInternalData&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 147 | auto_ptr opts_memento +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastPrelimSearch::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr opts_memento +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastPrelimSearch::ComputeBlastHSPResults(BlastHSPStream*, Uint4, bool*, std::vector*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 329 | auto_ptr opts_memento - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42564,8 +42576,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/uniform_search.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42573,8 +42584,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42590,20 +42600,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastTracebackSearch::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:226:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 226 | auto_ptr omp_env; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastTracebackSearch::RunSimple()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 329 | auto_ptr omp_env; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -42619,6 +42615,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastTracebackSearch::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:226:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 226 | auto_ptr omp_env; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -42644,11 +42647,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastTracebackSearch::RunSimple()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 329 | auto_ptr omp_env; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42675,22 +42687,15 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/objmgr_query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/seqalign__.hpp:1, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42706,26 +42711,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/objmgr_query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/seqalign__.hpp:1, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -42741,6 +42745,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'virtual void ncbi::blast::CBlastPrelimSearch::SetNumberOfThreads(size_t)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:117:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr opts_memento + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'int ncbi::blast::CBlastPrelimSearch::x_LaunchMultiThreadedSearch(ncbi::blast::SInternalData&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 147 | auto_ptr opts_memento + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastPrelimSearch::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr opts_memento + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastPrelimSearch::ComputeBlastHSPResults(BlastHSPStream*, Uint4, bool*, std::vector*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 329 | auto_ptr opts_memento + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; @@ -42748,13 +42780,37 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -2.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, @@ -42816,29 +42872,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +2.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, @@ -42961,35 +43001,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -43100,79 +43111,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -ULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:34: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43180,15 +43124,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43208,10 +43144,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43219,10 +43153,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43242,8 +43173,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43251,7 +43183,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43267,36 +43202,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +ULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -43310,13 +43236,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp: In member function 'void ncbi::blast::CQuerySplitter::x_ComputeQueryContextsForChunks()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:344:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 344 | auto_ptr qdpc; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -43427,21 +43346,47 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp: In member function 'void ncbi::blast::CQuerySplitter::x_ComputeQueryContextsForChunks()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:344:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 344 | auto_ptr qdpc; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43449,7 +43394,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43465,21 +43410,47 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43507,6 +43478,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -43519,13 +43496,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast_options.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43533,10 +43516,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43555,10 +43535,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43566,10 +43544,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43585,13 +43560,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43599,7 +43578,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -43663,6 +43644,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast_options.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -43674,13 +43688,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, @@ -43733,17 +43773,17 @@ /bin/ln -f .align_format.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o @@ -43863,16 +43903,16 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -43888,9 +43928,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -43906,9 +43946,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -43924,9 +43964,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -43942,9 +43982,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -43960,9 +44000,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -43974,16 +44014,16 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -43999,9 +44039,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -44017,9 +44057,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -44035,9 +44075,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -44053,9 +44093,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -44071,9 +44111,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -44216,7 +44256,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44436,6 +44476,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ .0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o @@ -44443,16 +44496,62 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /bin/rm -f libxblast.so .libxblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/usr/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -44469,35 +44568,26 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -44513,12 +44603,26 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -44566,6 +44670,43 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:41: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -44574,41 +44715,38 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -44627,31 +44765,75 @@ /bin/ln -f .xblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -cd algo/blast/blastinput/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput TMPL=blastinput -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput TMPL=blastinput -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j15 --jobserver-auth=7,8 all +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -44664,14 +44846,7 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o -/u/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here @@ -44684,39 +44859,21 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wnmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o +/uo-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44825,48 +44982,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44987,74 +45104,53 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] 447 | #pragma ivdep | -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -45079,24 +45175,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -45104,58 +45182,61 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp: In static member function 'static void showdefline::CShowBlastDeflineTest::GetDeflineInfo(TestUtil::CBlastOM::ELocation)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:74:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 74 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:99:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 99 | auto_ptr + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:101:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 101 | auto_ptr + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:55: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -45180,66 +45261,38 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp: In static member function 'static void vectorscreen::CVecscreenTest::VecscreenDisplay()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:93:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 93 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 77 | if (hits.size() < numHashes) - | ~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp: In static member function 'static void showdefline::CShowBlastDeflineTest::GetDeflineInfo(TestUtil::CBlastOM::ELocation)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:74:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 74 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:99:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 99 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:101:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 101 | auto_ptr +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -45260,18 +45313,35 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:36: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 77 | if (hits.size() < numHashes) + | ~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp: In static member function 'static void vectorscreen::CVecscreenTest::VecscreenDisplay()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:93:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 93 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45281,8 +45351,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45306,19 +45376,11 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45326,7 +45388,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45342,26 +45404,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45373,12 +45423,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -45391,14 +45435,54 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +t+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o +/bin/rm -f libxcleanup.so .libxcleanup.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcleanup.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45425,8 +45509,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45434,7 +45518,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45450,14 +45534,47 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45482,19 +45599,10 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45504,21 +45612,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45534,11 +45633,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:38: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 807 | if (last_oid == *i) + | ~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp: In member function 'void ncbi::blast::CBlastKmerResults::GetTSL(ncbi::blast::TSeqLocVector&, ncbi::CRef) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:75:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 75 | auto_ptr ssl(new SSeqLoc(*seqloc, *scope)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45546,14 +45673,17 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:38: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 807 | if (last_oid == *i) - | ~~~~~~~~~^~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -45572,8 +45702,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45585,14 +45715,26 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45616,22 +45758,57 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45639,10 +45816,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45658,16 +45832,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -45678,8 +45856,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45687,7 +45864,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:39: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45703,13 +45882,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:41: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45717,9 +45893,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45742,11 +45917,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -45763,58 +45936,72 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjutil -lvalid -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcleanup.so +/bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcleanup.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +cd objtools/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format TMPL=xformat -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp -o accession_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp -o comment_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp -o contig_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp -o date_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -WfIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45838,22 +46025,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +ormat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -45870,49 +46050,35 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45927,17 +46093,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45956,11 +46115,9 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45968,7 +46125,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -45984,8 +46141,29 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -45997,12 +46175,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46036,16 +46223,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -46057,50 +46242,61 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp: In member function 'void ncbi::blast::CBlastKmerResults::GetTSL(ncbi::blast::TSeqLocVector&, ncbi::CRef) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:75:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 75 | auto_ptr ssl(new SSeqLoc(*seqloc, *scope)); - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -46121,100 +46317,116 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ @@ -46228,180 +46440,230 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:32: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:60: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -t+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o -/bin/rm -f libxcleanup.so .libxcleanup.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcleanup.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_objectWformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46409,7 +46671,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46425,79 +46687,36 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:90: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] - 67 | const bool kFilterByDefault = false; - | ^~~~~~~~~~~~~~~~ -.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjutil -lvalid -lxregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lpcre -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcleanup.so -/bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcleanup.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -cd objtools/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format TMPL=xformat -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp -o accession_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp -o comment_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp -o contig_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp -o date_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blWdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o align_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/align_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:58: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46505,7 +46724,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46521,14 +46740,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:56: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46536,7 +46768,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46554,12 +46792,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46567,7 +46800,22 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46583,16 +46831,36 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46600,7 +46868,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46616,27 +46884,47 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:61: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o align_format_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/align_format_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46644,7 +46932,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46660,20 +46954,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:61: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46681,13 +46980,15 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -46704,63 +47005,85 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:91: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:63: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46768,19 +47091,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] - 205 | const int kMaxValue = static_cast(GetCpuCount()); - | ~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here - 479 | unsigned int GetCpuCount(void) - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -46793,11 +47107,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46805,7 +47135,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46821,32 +47151,87 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const CBioseqContext&, std::string&, const CUser_object&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:374:16: warning: unused variable 'is_html' [-Wunused-variable] + 374 | const bool is_html = ctx.Config().DoHTML(); + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:56: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:60: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] + 67 | const bool kFilterByDefault = false; + | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46854,7 +47239,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46870,19 +47255,54 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -sr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o -/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libproteinkmer.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libproteinkmer.so -/bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.proteinkmer.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:70: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46890,7 +47310,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -46906,248 +47332,446 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -cd algo/blast/igblast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:220:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + 220 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:221:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 221 | if (this_start < (15 + last_stop) ) { + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:344:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 344 | } catch (CException) { + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] + 205 | const int kMaxValue = static_cast(GetCpuCount()); + | ~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here + 479 | unsigned int GetCpuCount(void) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +sr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o +/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libproteinkmer.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libproteinkmer.so +/bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.proteinkmer.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +cd algo/blast/igblast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:65: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:94: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast TMPL=igblast -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast TMPL=igblast -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j16 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:61: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:61: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47256,16 +47880,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47485,51 +48102,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47638,21 +48213,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47763,7 +48326,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47874,7 +48437,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -47942,14 +48505,12 @@ 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -47962,12 +48523,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -47980,15 +48541,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -48001,12 +48559,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -48019,12 +48577,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -48037,12 +48595,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -48055,6 +48613,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -48096,7 +48659,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -48164,48 +48727,7 @@ 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -48316,77 +48838,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() +IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -48429,7 +48881,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -48538,9 +48990,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:108: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -48649,109 +49109,46 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 113 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const std::string& ncbi::objects::s_AaName(int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:2115:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] + 2115 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ +ast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp -o primary_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp -o reference_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp -o segment_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp -o source_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp -o version_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:45: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -48759,7 +49156,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -48775,47 +49172,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:53: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/igblast/igblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -48823,13 +49212,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -48839,27 +49222,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:55: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -48867,7 +49238,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -48883,39 +49254,11 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:220:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - 220 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:221:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 221 | if (this_start < (15 + last_stop) ) { - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:344:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 344 | } catch (CException) { - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:70: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -48926,58 +49269,41 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:58: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:41: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -48987,76 +49313,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:90: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49072,88 +49356,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49169,68 +49380,35 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:65: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:91: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const CBioseqContext&, std::string&, const CUser_object&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:374:16: warning: unused variable 'is_html' [-Wunused-variable] - 374 | const bool is_html = ctx.Config().DoHTML(); - | ^~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -49247,58 +49425,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:94: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + 182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] + 387 | if ( genome >= s_organelle_prefix_size ) { + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -49312,62 +49459,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:108: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp: In member function 'void blasthits::BlastTargetSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 113 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -ast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp -o primary_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp -o reference_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp -o segment_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp -o source_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp -o version_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -D/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const std::string& ncbi::objects::s_AaName(int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:2115:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] - 2115 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +NDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp -o context.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49385,18 +49503,10 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49412,28 +49522,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:50: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/igblast/igblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -49441,7 +49540,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49457,32 +49556,38 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp: In member function 'void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef&, ncbi::CRef&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:997:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 997 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false; + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -lm -lpthread -o gapinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gapinfo_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -49490,32 +49595,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -49528,13 +49613,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j15 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49550,34 +49647,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49594,62 +49677,18 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -NDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp -o context.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:73:47: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 73 | BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:180:9: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL_EX' - 180 | S; \ - | ^ -/usr/include/boost/test/tools/old/interface.hpp:147:45: note: in expansion of macro 'BOOST_CHECK_NO_THROW_IMPL' - 147 | #define BOOST_CHECK_NO_THROW( S ) BOOST_CHECK_NO_THROW_IMPL( S, CHECK ) - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp: In member function 'void blasthits::BlastTargetSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -49665,504 +49704,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffs::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:334:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 334 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:337:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 337 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffsSmallDB::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:503:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 503 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:506:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 506 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_besthit_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_besthit_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPResetGapProb::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:591:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 591 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:594:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 594 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:56: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewSomeInvalidKbp::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:855:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 855 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:858:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 858 | auto_ptr qsl2( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 861 | auto_ptr qsl3( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnLargeSubjectSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:941:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 941 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnMidsizeSubjectSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1012:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1012 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blastdiag_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdiag_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamUpdateMultipleCalls::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1080:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1080 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnSmallSubjectSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1168 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -lm -lpthread -o gapinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gapinfo_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testInitialWordParamNewSomeInvalidKbp::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1237 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1240 | auto_ptr qsl2( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1243:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1243 | auto_ptr qsl3( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1329:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1329 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1333:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1333 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1338 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1340:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1340 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1344 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1346:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1346 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1350 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1352:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1352 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1356 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1358:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1358 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /usr/include/boost/test/test_tools.hpp:45, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:68: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1397:56: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 1397 | BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j16 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -50271,128 +49815,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp: In member function 'void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef&, ncbi::CRef&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:997:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 997 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false; - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGapAlignment::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:259:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 259 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:262:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 262 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignment::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:345:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 345 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:348:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 348 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignmentWithBadStart::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:457:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 457 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:461:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 461 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -50408,107 +49837,30 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp: In member function 'void AalookupTestFixture::GetSeqBlk(std::string)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:99:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_unknown)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp: In constructor 'AascanTestFixture::AascanTestFixture()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:105:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr ssl - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:56: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:140:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 140 | auto_ptr subject_ssl - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -50524,316 +49876,57 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:29: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProt::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:485:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 485 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 490 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProtRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 516 | auto_ptr sseqloc( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 522 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrandFiltered::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:549:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 549 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrandFiltered::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:576:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 576 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrandFiltered::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:603:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 603 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:632:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 632 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:635:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 635 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:659:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 659 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:661:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 661 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:685:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 685 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:688:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 688 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI4NA_NoSentinels::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:758:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 758 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI2NA::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:773:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 773 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapOnlySequenceNCBI2NA::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:788:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 788 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapInSequenceNCBI2NA::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:811:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 811 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculator_Ungapped::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:952:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 952 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:957:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 957 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculatorNoSideEffects::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:978:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 978 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:983:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 983 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMitochondrialGeneticCode::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1046:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1046 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMainSetup::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1071:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1071 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testSetupWithZeroLengthSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1237 | auto_ptr ssl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1238:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1238 | auto_ptr ssl2(CTestObjMgr::Instance().CreateEmptySSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1239:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1239 | auto_ptr ssl3(CTestObjMgr::Instance().CreateSSeqLoc(id3, kStrand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSubjectTranslations::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1281:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1281 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1323:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1323 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQueryOnOneStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1362:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1362 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - 182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] - 387 | if ( genome >= s_organelle_prefix_size ) { - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGapAlignment::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:259:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 259 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In static member function 'static void CBlastFilterTest::x_TestLowerCaseMaskWith(ncbi::objects::ENa_strand, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr qsl( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:262:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 262 | auto_ptr ssl( + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -50841,7 +49934,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -50857,283 +49950,371 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In function 'void blastfilter::x_TestGetFilteredQueryRegions(ncbi::objects::ENa_strand)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:333:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 333 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignment::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:345:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 345 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::SegFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:473:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 473 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:348:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 348 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:513:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 513 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignmentWithBadStart::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:457:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 457 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:575:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 575 | auto_ptr +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:461:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 461 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_OnSeqInterval::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:625:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 625 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp: In member function 'void AalookupTestFixture::GetSeqBlk(std::string)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:99:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_unknown)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsAndDustFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:707:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 707 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:712:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 712 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerAndDustFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:734:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 734 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:739:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 739 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_OnSeqInterval::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:772:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 772 | auto_ptr - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_NoHitsFound::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:807:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 807 | auto_ptr qsl( +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_NoHitsFound::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:822:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 822 | auto_ptr qsl +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:73:47: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 73 | BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:180:9: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL_EX' + 180 | S; \ + | ^ +/usr/include/boost/test/tools/old/interface.hpp:147:45: note: in expansion of macro 'BOOST_CHECK_NO_THROW_IMPL' + 147 | #define BOOST_CHECK_NO_THROW( S ) BOOST_CHECK_NO_THROW_IMPL( S, CHECK ) + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffs::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:334:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 334 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilterWithMissingParameter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:838:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 838 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:337:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 337 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerWithMissingParameter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:851:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 851 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffsSmallDB::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:503:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 503 | auto_ptr qsl( | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:506:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 506 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPResetGapProb::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:591:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 591 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndLowerCaseMask::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1135:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1135 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:594:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 594 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template c/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o gencode_singleton_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gencode_singleton_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndDustFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1178 | auto_ptr qsl( +lass auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclBoth::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1212:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1212 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclPlus::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1242 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewSomeInvalidKbp::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:855:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 855 | auto_ptr qsl1( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclMinus::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1272:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1272 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:858:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 858 | auto_ptr qsl2( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocProtein::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1305:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1305 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 861 | auto_ptr qsl3( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:29: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnLargeSubjectSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:941:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 941 | auto_ptr qsl1( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskProteinSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1349:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1349 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnMidsizeSubjectSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1012:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1012 | auto_ptr qsl1( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskNucleotideBothStrands::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1399:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1399 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamUpdateMultipleCalls::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1080:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1080 | auto_ptr qsl1( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/sequence_item.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnSmallSubjectSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1168 | auto_ptr qsl1( | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testInitialWordParamNewSomeInvalidKbp::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1237 | auto_ptr qsl1( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1240 | auto_ptr qsl2( + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterMultipleQueriesLocNuclPlus::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1484:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1484 | auto_ptr qsl1( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1243:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1243 | auto_ptr qsl3( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1487:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1487 | auto_ptr qsl2( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1329:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1329 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1333:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1333 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1338 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1340:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1340 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1344 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1346:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1346 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1350 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1352:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1352 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1356 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1358:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1358 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/boost/test/test_tools.hpp:45, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:68: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1397:56: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 1397 | BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1490 | auto_ptr qsl3( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:56: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blastdiag_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdiag_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51254,22 +50435,36 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:1108:10: warning: unused variable 'bHtml' [-Wunused-variable] + 1108 | bool bHtml = ctx.Config().DoHTML(); + | ^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:63: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/sequence_item.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -51277,7 +50472,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -51293,61 +50488,62 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:56: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -51366,15 +50562,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -RTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o -/bin/rm -f libblastinput.so .libblastinput.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastinput.so -/bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastinput.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -51387,49 +50580,213 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In static member function 'static void CBlastFilterTest::x_TestLowerCaseMaskWith(ncbi::objects::ENa_strand, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In function 'void blastfilter::x_TestGetFilteredQueryRegions(ncbi::objects::ENa_strand)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:333:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 333 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o gencode_singleton_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gencode_singleton_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::SegFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:473:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 473 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:513:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 513 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j15 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:575:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 575 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_OnSeqInterval::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:625:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 625 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j16 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProt::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:485:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 485 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsAndDustFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:707:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 707 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 490 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:712:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 712 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerAndDustFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:734:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 734 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:739:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 739 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_OnSeqInterval::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:772:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 772 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_NoHitsFound::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:807:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 807 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:1108:10: warning: unused variable 'bHtml' [-Wunused-variable] - 1108 | bool bHtml = ctx.Config().DoHTML(); - | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_NoHitsFound::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:822:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 822 | auto_ptr qsl + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProtRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 516 | auto_ptr sseqloc( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 522 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilterWithMissingParameter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:838:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 838 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerWithMissingParameter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:851:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 851 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrandFiltered::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:549:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 549 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrandFiltered::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:576:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 576 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrandFiltered::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:603:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 603 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51538,9 +50895,272 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:632:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 632 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:635:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 635 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:659:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 659 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:661:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 661 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:685:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 685 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:688:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 688 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp: In constructor 'AascanTestFixture::AascanTestFixture()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:105:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr ssl + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI4NA_NoSentinels::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:758:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 758 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:140:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 140 | auto_ptr subject_ssl + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI2NA::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:773:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 773 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapOnlySequenceNCBI2NA::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:788:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 788 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapInSequenceNCBI2NA::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:811:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 811 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculator_Ungapped::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:952:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 952 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:957:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 957 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndLowerCaseMask::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1135:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1135 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculatorNoSideEffects::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:978:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 978 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:983:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 983 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndDustFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1178 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMitochondrialGeneticCode::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1046:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1046 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMainSetup::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1071:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1071 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclBoth::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1212:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1212 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +-o genbank_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEB/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclPlus::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1242 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclMinus::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1272:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1272 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testSetupWithZeroLengthSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1237 | auto_ptr ssl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1238:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1238 | auto_ptr ssl2(CTestObjMgr::Instance().CreateEmptySSeqLoc(id2)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1239:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1239 | auto_ptr ssl3(CTestObjMgr::Instance().CreateSSeqLoc(id3, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocProtein::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1305:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1305 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskProteinSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1349:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1349 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSubjectTranslations::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1281:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1281 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskNucleotideBothStrands::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1399:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1399 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1323:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1323 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQueryOnOneStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1362:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1362 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterMultipleQueriesLocNuclPlus::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1484:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1484 | auto_ptr qsl1( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1487:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1487 | auto_ptr qsl2( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1490 | auto_ptr qsl3( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -51548,7 +51168,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -51565,12 +51185,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/embl_formatter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -51578,7 +51194,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -51594,19 +51210,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:48: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:63: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -51614,7 +51220,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -51630,18 +51236,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ --o genbank_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -51649,8 +51247,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -51666,6 +51263,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -51678,70 +51285,50 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_culling_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_culling_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:73: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_besthit_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_besthit_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_generator.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51850,15 +51437,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aalookup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aalookup_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j15 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, @@ -51869,56 +51476,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:100: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:101: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 78 | auto_ptr m_BioseqIter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/embl_formatter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -51936,36 +51521,8 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:64: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_SubtractFromFocus(TSourceFeatSet&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:2144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2144 | auto_ptr copyOfOriginalSeqLocOfFocus( new CSeq_loc() ); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:66: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ @@ -51978,26 +51535,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr m_Out; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -52010,41 +51547,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_generator.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aalookup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aalookup_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52153,14 +51658,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:66: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:64: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ @@ -52173,43 +51671,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputTblastn()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:235:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 235 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:240:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 240 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputBlastn()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:391:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 391 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid, range)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'AllCutoffScores* LinkHspTestFixture::setupCutoffScores(bool, Int8, Uint4, Uint4, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:433:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 433 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:438:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 438 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -52217,7 +51682,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -52233,71 +51698,59 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:971:13: warning: 'bool ncbi::objects::s_NsAreGaps(const CBioseq_Handle&, CBioseqContext&)' defined but not used [-Wunused-function] - 971 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) - | ^~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aascan_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aascan_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:73: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr m_Out; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +RTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o +/bin/rm -f libblastinput.so .libblastinput.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastinput.so +/bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastinput.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j16 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:35: +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52406,50 +51859,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:100: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp: In member function 'void msa2pssm::QueryNotFoundInMsa::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:55:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 55 | auto_ptr pssm_input; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:101: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 78 | auto_ptr m_BioseqIter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -52463,36 +51897,57 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastextend_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastextend_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_SubtractFromFocus(TSourceFeatSet&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:2144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2144 | auto_ptr copyOfOriginalSeqLocOfFocus( new CSeq_loc() ); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/genbank_formatter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -52500,7 +51955,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -52516,21 +51971,40 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_culling_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_culling_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2048:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + 2048 | } catch (CSeqVectorException) { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2089:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + 2089 | } catch (CSeqVectorException) { + | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52639,12 +52113,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/genbank_formatter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -52660,36 +52146,54 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:971:13: warning: 'bool ncbi::objects::s_NsAreGaps(const CBioseq_Handle&, CBioseqContext&)' defined but not used [-Wunused-function] + 971 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/ftable_formatter.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:34: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastengine_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastengine_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -52706,19 +52210,26 @@ 64 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspstream_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspstream_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastextend_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastextend_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52828,23 +52339,26 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blasthits_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blasthits_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2048:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - 2048 | } catch (CSeqVectorException) { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2089:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - 2089 | } catch (CSeqVectorException) { - | ^~~~~~~~~~~~~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52953,13 +52467,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/ftable_formatter.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -52967,7 +52486,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -52983,19 +52502,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -53014,39 +52529,141 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const std::string&, ncbi::TGi)' defined but not used [-Wunused-function] + 281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) + | ^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_config.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:33: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blasthits_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blasthits_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aascan_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aascan_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53155,9 +52772,64 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp: In member function 'void msa2pssm::QueryNotFoundInMsa::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:55:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 55 | auto_ptr pssm_input; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o +/bin/rm -f libigblast.so .libigblast.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libigblast.so +/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.igblast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastengine_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastengine_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53266,9 +52938,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53377,27 +53051,86 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputTblastn()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:235:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 235 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:240:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 240 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputBlastn()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:391:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 391 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid, range)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'AllCutoffScores* LinkHspTestFixture::setupCutoffScores(bool, Int8, Uint4, Uint4, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:433:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 433 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:438:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 438 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_config.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -53414,10 +53147,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -53425,7 +53156,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -53441,6 +53172,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gap_item.cpp -o gap_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WerIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ @@ -53454,7 +53200,9 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -53474,17 +53222,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const std::string&, ncbi::TGi)' defined but not used [-Wunused-function] - 281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -53497,18 +53255,42 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr m_Out; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o proteinkmer_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/proteinkmer_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -53516,8 +53298,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:33: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -53533,56 +53314,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gap_item.cpp -o gap_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WerIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp: In member function 'void NtlookupTestFixture::SetUpQuery(Uint4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:99:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o -/bin/rm -f libigblast.so .libigblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libigblast.so -/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.igblast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspstream_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspstream_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -53590,7 +53354,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -53606,40 +53371,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o proteinkmer_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/proteinkmer_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpQuery(Uint4, ncbi::objects::ENa_strand)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:127:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 127 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id,strand)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpSubject(Uint4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:197:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 197 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j16 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53748,10 +53482,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53860,83 +53593,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:33: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o msa2pssm_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/msa2pssm_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54045,57 +53704,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o linkhsp_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/linkhsp_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54204,68 +53815,50 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp: In member function 'void NtlookupTestFixture::SetUpQuery(Uint4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:99:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc( + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/cigar_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp: In member function 'virtual void ncbi::objects::CGenomeProjectItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:274:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 274 | auto_ptr pStrsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:305:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 305 | auto_ptr pIntsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psibl2seq.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54290,9 +53883,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:55: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ @@ -54305,50 +53903,190 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr m_Out; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp: In member function 'virtual void ncbi::objects::CGenomeProjectItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:274:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 274 | auto_ptr pStrsDestroyer; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:305:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 305 | auto_ptr pIntsDestroyer; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::SplitNucleotideQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 144 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 78 | auto_ptr m_BioseqIter; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_blastn::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:173:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 173 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o msa2pssm_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/msa2pssm_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_tblastx::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 210 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/cigar_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54356,10 +54094,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/item_base.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/html_anchor_item.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:34: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -54375,36 +54112,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 78 | auto_ptr m_BioseqIter; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:37: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, @@ -54435,19 +54142,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54455,9 +54167,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/item_base.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/html_anchor_item.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -54473,33 +54184,35 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:58: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psibl2seq.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54512,23 +54225,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -54541,6 +54237,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpQuery(Uint4, ncbi::objects::ENa_strand)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:127:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 127 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id,strand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpSubject(Uint4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:197:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 197 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: @@ -54550,35 +54260,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastoptions_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastoptions_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j16 --jobserver-auth=7,8 all /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -54591,34 +54289,49 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_objmgr_priv.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp: In member function 'bool ncbi::objects::CGather_Iter::x_AddSeqEntryToStack(const ncbi::objects::CSeq_entry_Handle&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:145:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 145 | auto_ptr seq_iter( new CBioseq_CI(entry, mol_type, CBioseq_CI::eLevel_Mains) ); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -54627,8 +54340,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:64: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54636,8 +54349,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -54653,9 +54367,48 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastoptions_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastoptions_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j15 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::SplitNucleotideQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 144 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_blastn::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:173:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 173 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_tblastx::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 210 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54764,51 +54517,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:67: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -54831,33 +54543,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:79: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 113 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 78 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -54865,8 +54583,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:64: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54891,132 +54608,83 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp: In member function 'bool ncbi::objects::CGather_Iter::x_AddSeqEntryToStack(const ncbi::objects::CSeq_entry_Handle&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:145:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 145 | auto_ptr seq_iter( new CBioseq_CI(entry, mol_type, CBioseq_CI::eLevel_Mains) ); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 113 | auto_ptr &feat_ci, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 78 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestConvertSeqalignToCdMsa::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:511:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 511 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:514:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 514 | auto_ptr in - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestFullPssmEngineRunWithDiagnosticsRequest::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:773:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 773 | auto_ptr in - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:781:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 781 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o psiblast_iteration_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_iteration_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o linkhsp_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestInternalGapsInSubject::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:914:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 914 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:933:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 933 | auto_ptr< CNcbiMatrix > pssm_scores( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestNoDomainHits::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:995:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 995 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j15 --jobserver-auth=7,8 all +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_objmgr_priv.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1014:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1014 | auto_ptr< CNcbiMatrix > pssm_scores( +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In static member function 'static ncbi::CRef CPssmCddInputTest::CreatePssmInput(EType)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1147 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:58: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -55041,22 +54709,148 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:84: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o psiblast_iteration_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_iteration_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:79: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55165,6 +54959,161 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp: In member function 'void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:87:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 87 | auto_ptr pssm_input; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 91 | auto_ptr< CNcbiMatrix > pssm + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:67: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:84: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestConvertSeqalignToCdMsa::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:511:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 511 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:514:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 514 | auto_ptr in + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestFullPssmEngineRunWithDiagnosticsRequest::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:773:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 773 | auto_ptr in + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:781:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 781 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestInternalGapsInSubject::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:914:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 914 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:933:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 933 | auto_ptr< CNcbiMatrix > pssm_scores( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestNoDomainHits::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:995:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 995 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1014:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1014 | auto_ptr< CNcbiMatrix > pssm_scores( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In static member function 'static ncbi::CRef CPssmCddInputTest::CreatePssmInput(EType)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1147 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testFullPssmEngineRunWithDiagnosticsRequest::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:574:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 574 | auto_ptr in @@ -55280,88 +55229,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp: In member function 'void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:87:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 87 | auto_ptr pssm_input; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 91 | auto_ptr< CNcbiMatrix > pssm - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -55389,38 +55256,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -55436,134 +55278,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::ProteinGetQueryInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:57:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 57 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::EmptyBlastxGetQueryInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:80:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 80 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 104 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryIndex::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 128 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:129:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 129 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:152:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 152 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfoSingleStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:188:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:190:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 190 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In function 'std::string x_Stringify(TOBJ&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_FullQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1027:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1027 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_QueryWithRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1088:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1088 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o phiblast_unit_test @@ -55571,20 +55285,20 @@ /bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55693,6 +55407,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntlookup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntlookup_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastsetup_unit_test @@ -55700,30 +55432,32 @@ /bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastsetup_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o prelimsearch_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/prelimsearch_unit_test +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55832,35 +55566,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntlookup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntlookup_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j16 --jobserver-auth=7,8 all -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55969,9 +55677,122 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psibl2seq_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psibl2seq_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::ProteinGetQueryInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:57:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 57 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::EmptyBlastxGetQueryInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:80:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 80 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 104 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryIndex::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 128 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:129:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 129 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:152:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 152 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfoSingleStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:188:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:190:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 190 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -56082,10 +55903,18 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -56102,34 +55931,26 @@ 64 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_blasthits_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rmblast_blasthits_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmenginefreqratios_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmenginefreqratios_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -56238,8 +56059,51 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +ror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o +/bin/rm -f libxformat.so .libxformat.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxformat.so +/bin/ln -f .xformat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xformat.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o prelimsearch_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/prelimsearch_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: @@ -56353,7 +56217,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -56462,27 +56326,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntscan_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntscan_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -56591,42 +56437,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psibl2seq_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psibl2seq_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -56735,15 +56548,89 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In function 'std::string x_Stringify(TOBJ&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_FullQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1027:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1027 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_QueryWithRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1088:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1088 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_blasthits_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rmblast_blasthits_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -56852,43 +56739,147 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp: In member function 'void traceback::testRMBlastTraceBack::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:184:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 184 | auto_ptr qsl( - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:187:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 187 | auto_ptr ssl( - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -ror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o -/bin/rm -f libxformat.so .libxformat.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxformat.so -/bin/ln -f .xformat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xformat.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastfilter_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastfilter_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntscan_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntscan_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j15 --jobserver-auth=7,8 all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -56997,14 +56988,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57029,27 +57028,11 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void RpsTestFixture::NuclSearch(ncbi::objects::ENa_strand)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:196:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 196 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57057,15 +57040,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::WholeSequenceMatch::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:217:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 217 | auto_ptr query( - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/random_gen.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -57081,36 +57058,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::TestCBSFreqsNotFound::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:317:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 317 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o queryinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/queryinfo_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j16 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57135,10 +57086,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void RpsTestFixture::NuclSearch(ncbi::objects::ENa_strand)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:196:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 196 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -57247,50 +57204,26 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::WholeSequenceMatch::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:217:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 217 | auto_ptr query( | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::TestCBSFreqsNotFound::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:317:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 317 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57303,61 +57236,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/random_gen.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -57373,64 +57255,64 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecSeqInfoSrc::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:70:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 70 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecIndexOutOfRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 91 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp: In member function 'void CRandomlyFailMockBlastSeqSrc::x_PopulateBLAST_SequenceBlk(BlastSeqSrcGetSeqArg*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:149:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 149 | auto_ptr sl | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockNucl::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 67 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_both)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockProtein::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:112:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 112 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockPHI::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:163:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 163 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockForFullyMaskedProtein::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 240 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, range)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp: In member function 'void traceback::testRMBlastTraceBack::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:184:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 184 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:187:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 187 | auto_ptr ssl( + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57455,41 +57337,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o stat_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/stat_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecSeqInfoSrc::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:70:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 70 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecIndexOutOfRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 91 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -57512,13 +57369,160 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockNucl::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 67 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_both)); +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o queryinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/queryinfo_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o querydata_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/querydata_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: @@ -57630,38 +57634,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockProtein::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:112:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 112 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockPHI::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:163:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 163 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp: In member function 'void CRandomlyFailMockBlastSeqSrc::x_PopulateBLAST_SequenceBlk(BlastSeqSrcGetSeqArg*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:149:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 149 | auto_ptr sl +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockForFullyMaskedProtein::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 240 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, range)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -57698,36 +57695,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o querydata_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/querydata_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57752,12 +57723,68 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_FullQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:285:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 285 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_QueryWithRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:347:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 347 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_DBSoftMask::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:553:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 553 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o optionshandle_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/optionshandle_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmcreate_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +2.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmcreate_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35: @@ -57869,39 +57896,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o optionshandle_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/optionshandle_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_FullQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:285:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 285 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_QueryWithRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:347:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 347 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_DBSoftMask::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:553:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 553 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: @@ -58013,16 +58025,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastfilter_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastfilter_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp: In function 'ncbi::blast::TSeqLocVector s_getSequences()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:88:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 88 | auto_ptr sl( @@ -58030,14 +58061,32 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o stat_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/stat_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=convert2blastmask -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=convert2blastmask -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -58148,6 +58197,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_traceback_unit_test @@ -58155,17 +58217,17 @@ /bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rmblast_traceback_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/segmasker/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/segmasker/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker TMPL=segmasker -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker TMPL=segmasker -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -58276,9 +58338,66 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/traceback_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -58289,26 +58408,50 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmcreate_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmcreate_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqinfosrc_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqinfosrc_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format TMPL=xblastformat -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format TMPL=xblastformat -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o setupfactory_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/setupfactory_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie scoreblk_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o scoreblk_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/scoreblk_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o @@ -58316,11 +58459,30 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o -/usr/bin/g++ -std=gnu++1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=gnu++1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -58561,11 +58723,29 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -58674,48 +58854,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/vecscreen_run.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -58824,31 +58969,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -58939,6 +59064,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -58975,137 +59118,59 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqinfosrc_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqinfosrc_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rps_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rps_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/traceback_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'ncbi::blast::CSearchResultSet CTracebackSearchTestFixture::x_Traceback(ncbi::CSeqDBGiList*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:269:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 269 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::SimpleTraceback::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:331:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 331 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::TracebackWithPssm_AndWarning::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:375:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 375 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o subj_ranges_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/subj_ranges_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -59119,103 +59184,79 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o setupfactory_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/setupfactory_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp: In function 'ncbi::blast::CSearchResultSet RunMultipleProteinSearch(ncbi::blast::ISearchFactory&, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:87:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 87 | auto_ptr sl0(CTestObjMgr::Instance().CreateSSeqLoc(query_id0)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:90:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 90 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(query_id1)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o subj_ranges_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/subj_ranges_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59232,6 +59273,25 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariatIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testBLASTNTraceBackLargeXDrop::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:341:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 341 | auto_ptr qsl( @@ -59271,37 +59331,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testFilterBlastResults_QueryCov::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:849:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 849 | auto_ptr qsl( @@ -59328,39 +59357,36 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o version_reference_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/version_reference_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/sam.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59376,82 +59402,100 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual void SegMaskerApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 104 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual int SegMaskerApplication::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:225:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 225 | auto_ptr reader(x_GetReader()); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:226:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 226 | auto_ptr writer(x_GetWriter()); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:239:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 239 | auto_ptr masks(masker(sequence_data)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:54: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ +ion -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqsrc_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqsrc_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59467,90 +59511,99 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o version_reference_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/version_reference_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/sam.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59566,39 +59619,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rps_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rps_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp: In function 'ncbi::blast::CSearchResultSet RunMultipleProteinSearch(ncbi::blast::ISearchFactory&, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:87:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 87 | auto_ptr sl0(CTestObjMgr::Instance().CreateSSeqLoc(query_id0)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:90:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 90 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(query_id1)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59617,19 +59650,11 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59646,7 +59671,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -59677,20 +59703,33 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie scoreblk_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o scoreblk_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/scoreblk_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, @@ -59722,110 +59761,100 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_Data; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | auto_ptr m_OptionsBuilder; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'ncbi::blast::CSearchResultSet CTracebackSearchTestFixture::x_Traceback(ncbi::CSeqDBGiList*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:269:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 269 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::SimpleTraceback::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:331:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 331 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::TracebackWithPssm_AndWarning::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:375:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 375 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual void CConvert2BlastMaskApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:148:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 148 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual int CConvert2BlastMaskApplication::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:223:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 223 | auto_ptr reader(x_GetReader()); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:224:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 224 | auto_ptr writer(x_GetWriter()); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59841,79 +59870,65 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariat/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual void SegMaskerApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 104 | auto_ptr arg_desc(new CArgDescriptions); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual int SegMaskerApplication::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:225:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 225 | auto_ptr reader(x_GetReader()); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:226:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 226 | auto_ptr writer(x_GetWriter()); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:239:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 239 | auto_ptr masks(masker(sequence_data)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -59938,9 +59953,10 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -59950,49 +59966,55 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp: In static member function 'static void ncbi::CBlastFormatUtil::PrintAsciiPssm(const ncbi::objects::CPssmWithParameters&, ncbi::CConstRef, ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:205:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 205 | auto_ptr< TNcbiMatrixInt > pssm +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:207:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 207 | auto_ptr< TNcbiMatrixDouble > weighted_res_freqs +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml_format.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -60017,16 +60039,29 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp: In static member function 'static void ncbi::CBlastFormatUtil::PrintAsciiPssm(const ncbi::objects::CPssmWithParameters&, ncbi::CConstRef, ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:205:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 205 | auto_ptr< TNcbiMatrixInt > pssm + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:207:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 207 | auto_ptr< TNcbiMatrixDouble > weighted_res_freqs + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -60057,37 +60092,29 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -60097,6 +60124,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -60117,17 +60154,48 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_Data; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | auto_ptr m_OptionsBuilder; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual void CConvert2BlastMaskApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:148:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 148 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual int CConvert2BlastMaskApplication::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:223:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 223 | auto_ptr reader(x_GetReader()); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:224:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 224 | auto_ptr writer(x_GetWriter()); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -60141,15 +60209,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml2_format.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml_format.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -60174,47 +60236,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -60226,110 +60255,48 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -ion -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqsrc_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqsrc_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const objects::CSeq_align_set&, objects::CScope*, const CBlastFormattingMatrix*, const TMaskedQueryRegions*, bool, int, int, CNcbiOstream*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:100: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] - 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here - 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' - 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED - | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::BlastXML_FormatReport(objects::CBlastOutput&, const IBlastXMLReportData*, CNcbiOstream*, SBlastXMLIncremental*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:719:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 719 | auto_ptr< CBlastFormattingMatrix > matrix(data->GetMatrix()); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const CSerialObject&, const char*, std::string&, std::string&, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:96: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] - 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here - 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' - 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml2_format.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -60354,12 +60321,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o segmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/segmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -60386,6 +60375,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; @@ -60393,12 +60394,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o search_strategy_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/search_strategy_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ @@ -60411,88 +60419,91 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o tracebacksearch_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tracebacksearch_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const objects::CSeq_align_set&, objects::CScope*, const CBlastFormattingMatrix*, const TMaskedQueryRegions*, bool, int, int, CNcbiOstream*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o segmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/segmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o convert2blastmask -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/convert2blastmask -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:100: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] + 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here + 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' + 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::BlastXML_FormatReport(objects::CBlastOutput&, const IBlastXMLReportData*, CNcbiOstream*, SBlastXMLIncremental*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:719:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 719 | auto_ptr< CBlastFormattingMatrix > matrix(data->GetMatrix()); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const CSerialObject&, const char*, std::string&, std::string&, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] - 122 | if (m_ResultsMap.size() != currNum) - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:96: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] + 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here + 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' + 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED + | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -60534,6 +60545,49 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o uniform_search_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/uniform_search_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] + 122 | if (m_ResultsMap.size() != currNum) + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: @@ -60553,34 +60607,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' declared here 88 | struct GenericMember { | ^~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o search_strategy_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/search_strategy_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o tracebacksearch_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tracebacksearch_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie split_query_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o split_query_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/split_query_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o remote_blast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/remote_blast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o convert2blastmask +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/convert2blastmask +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetObjectRaw(Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; Member = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:55: required from 'bool rapidjson::GenericDocument::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:40: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(IterativeParsingState, Token, IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' @@ -60610,10 +60643,10 @@ 564 | class GenericValue { | ^~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o uniform_search_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/uniform_search_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o remote_blast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/remote_blast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' @@ -60623,6 +60656,13 @@ /bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/traceback_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie split_query_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o split_query_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/split_query_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' 4 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp -o sam.o @@ -60634,184 +60674,174 @@ /bin/ln -f .xblastformat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blast_report LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blast_report LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j16 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_formatter -w -j15 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_report -w -j15 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j16 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastn -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastx -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_report -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_formatter -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastp -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j16 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=deltablast -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=psiblast -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastx -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastp -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastn -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=deltablast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -60921,7 +60951,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61031,7 +61061,8 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61141,8 +61172,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61253,7 +61283,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61290,29 +61320,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61385,6 +61392,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61474,63 +61505,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61641,7 +61616,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61745,8 +61720,13 @@ 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:35: + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61754,12 +61734,7 @@ 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -NCBI_BUILD_TAG_PROXY) + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ @@ -61802,7 +61777,16 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ + | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_T ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -61823,7 +61807,18 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ + | ^~~~~~~~~~~IME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corel~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61833,12 +61828,33 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: ib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/nin expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -61860,6 +61876,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +cbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61919,12 +61950,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62031,7 +62056,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -62140,6 +62165,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62246,7 +62286,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -62275,17 +62315,31 @@ 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFNCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/veAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +/build/reproducible-path/ncbi-brsion.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62293,11 +62347,29 @@ 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFlast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | AULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-b ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -62307,22 +62379,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion last+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' @@ -62333,17 +62390,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + | of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' @@ -62352,55 +62399,40 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' @@ -62409,12 +62441,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~ ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62424,12 +62453,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEF~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -62439,7 +62463,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: inAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ + expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' @@ -62467,7 +62497,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -62578,16 +62608,16 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -62603,9 +62633,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -62621,9 +62651,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -62639,9 +62669,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -62657,9 +62687,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -62675,9 +62705,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -62687,31 +62717,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -62820,10 +62831,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -62845,7 +62874,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -62866,7 +62895,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -62975,122 +63004,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_input_unit_test_aux.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:64: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -63111,7 +63050,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -63222,14 +63161,36 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelibIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' @@ -63331,31 +63292,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_input_unit_test_aux.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:64: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -63467,29 +63407,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -63509,11 +63427,8 @@ 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -63622,28 +63537,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: note: in definition of macro 'NCBI_BUILD_TIME' - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -63687,7 +63584,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -63706,20 +63603,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -63736,43 +63619,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -63780,39 +63629,27 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/deltablast.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -63824,7 +63661,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -63858,63 +63695,61 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:35: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -63933,8 +63768,11 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -63975,46 +63813,32 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/deltablast.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -64022,7 +63846,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64050,13 +63874,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -64068,7 +63893,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64103,7 +63928,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64134,11 +63959,9 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64146,11 +63969,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -64166,21 +63988,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64199,72 +64023,43 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -64272,18 +64067,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -64293,31 +64076,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -64325,8 +64089,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64354,30 +64118,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64385,10 +64142,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -64404,6 +64159,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -64411,7 +64172,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -64427,6 +64188,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -64441,36 +64209,30 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -64487,6 +64249,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: @@ -64520,142 +64292,40 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -64666,35 +64336,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: @@ -64716,94 +64357,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std:/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -:unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:37: + | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ + ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -64816,108 +64397,64 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp: In function 'void s_LoadSeqAlignsFromFile(ncbi::objects::CSeq_align_set&, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:241:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 241 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp: In function 'void s_LoadSeqAlignsFromFile(ncbi::objects::CSeq_align_set&, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:241:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 241 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:41: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -64930,54 +64467,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -64993,44 +64496,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: @@ -65064,41 +64529,32 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:66: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -65129,97 +64585,62 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -65231,130 +64652,110 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/vecscreen_run.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpsblast -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=psiblast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ @@ -65367,25 +64768,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -65494,142 +64894,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:66: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -65642,14 +64921,45 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:54: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -65666,41 +64976,41 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ @@ -65713,9 +65023,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -65740,64 +65056,69 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -65810,6 +65131,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ @@ -65828,9 +65164,34 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -65855,35 +65216,63 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -65920,108 +65309,151 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetAlnScoresAndGetScoreString::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/vecscreen_run.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetSubjectQueryCoverageScore::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 201 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +File> m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std:/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +:unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:61: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:57: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -66034,40 +65466,81 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp: In member function 'virtual void CBlastReportApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -66105,24 +65578,88 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:65: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp: In member function 'virtual void CBlastFormatterApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ @@ -66135,8 +65672,46 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:61: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetAlnScoresAndGetScoreString::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetSubjectQueryCoverageScore::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 201 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -66153,22 +65728,29 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp: In member function 'virtual void CBlastReportApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -66181,21 +65763,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In static member function 'static void CRedoAlignmentTestFixture::runRedoAlignmentCoreUnitTest(EBlastProgramType, ncbi::objects::CSeq_id&, ncbi::objects::CSeq_id&, BlastHSPList*, const BlastHSPList*, Int8, ECompoAdjustModes, bool, double, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 210 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:211:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 211 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(sid)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -66212,74 +65793,63 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:68: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In member function 'void RedoAlignment::testRedoAlignmentWithCompBasedStatsBadlyBiasedSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:636:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 636 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:65: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:68: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In static member function 'static void CRedoAlignmentTestFixture::runRedoAlignmentCoreUnitTest(EBlastProgramType, ncbi::objects::CSeq_id&, ncbi::objects::CSeq_id&, BlastHSPList*, const BlastHSPList*, Int8, ECompoAdjustModes, bool, double, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 210 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:211:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 211 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp: In member function 'int CBlastpApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' - 275 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' - 275 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastSelfHit::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:584:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 584 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); @@ -66313,6 +65883,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In member function 'void RedoAlignment::testRedoAlignmentWithCompBasedStatsBadlyBiasedSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:636:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 636 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsRevStrand2::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:694:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 694 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); @@ -66326,6 +65903,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In function 'std::string* blastinput::s_FileContents2String(const char*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1669:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1669 | auto_ptr retval(new string); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNucleotideIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1681:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1681 | auto_ptr user_input(s_FileContents2String(fname)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsCompBasedStats::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:720:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 720 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); @@ -66339,6 +65930,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadGiNuclWithFlankingSpacesIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1735:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1735 | auto_ptr user_input(new string(" 1945386 \n ")); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsLargeWord::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:755:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 755 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); @@ -66352,6 +65950,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNuclWithFlankingSpacesIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1808:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1808 | auto_ptr user_input(new string(" X65215.1 ")); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::IdenticalProteins::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:789:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 789 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); @@ -66365,6 +65970,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadFastaWithDeflineProteinIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1882:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1882 | auto_ptr user_input(s_FileContents2String(fname)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::PositiveMismatchOption::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:835:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 835 | auto_ptr query( @@ -66471,6 +66083,30 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp: In member function 'int CBlastxApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' + 274 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' + 274 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastpExitAfter3Callbacks::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1276 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); @@ -66478,6 +66114,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastMultipleQueriesWithInvalidSeqId::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1426:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1426 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(*id1)); @@ -66550,18 +66198,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::MegablastGreedyTracebackSelfHits::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1844:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1844 | auto_ptr ql( @@ -66575,6 +66211,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'ncbi::CArgs* blastargs::CString2Args::CreateCArgs(ncbi::blast::CBlastAppArgs&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3227:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3227 | auto_ptr arg_desc(args.SetCommandLine()); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryPlusStrand::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1878:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1878 | auto_ptr query( @@ -66588,6 +66239,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::PsiBlastAppTestMatrix::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3289:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3289 | auto_ptr args(s2a.CreateCArgs(psiblast_args)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryMinusStrand::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1892:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1892 | auto_ptr query( @@ -66601,6 +66259,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::RpsBlastCBS::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3300:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3300 | auto_ptr args(s2a.CreateCArgs(rpsblast_args)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastx2Seqs_QueryBothStrands::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1907:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1907 | auto_ptr sl( @@ -66622,12 +66287,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMutuallyExclusiveOptions::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3320:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3320 | auto_ptr args; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastxManyHits::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1949:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1949 | auto_ptr qsl( @@ -66641,6 +66310,22 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckDiscoMegablast::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3327:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3327 | auto_ptr args; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlast2Seqs::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1986:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1986 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); @@ -66654,6 +66339,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithRepeatFiltering_InvalidDB::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2001:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2001 | auto_ptr query( @@ -66661,6 +66352,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckPercentIdentity::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3351:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3351 | auto_ptr args; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithRepeatFiltering::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2022:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2022 | auto_ptr query( @@ -66668,6 +66366,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckNoGreedyExtension::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3365:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3365 | auto_ptr args; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_Db::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2052:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2052 | auto_ptr query( @@ -66675,6 +66386,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_Taxid::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2072:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2072 | auto_ptr query( @@ -66682,6 +66401,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckCulling::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3387:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3387 | auto_ptr args; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_InvalidDb::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2087:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2087 | auto_ptr query( @@ -66696,17 +66422,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_DbAndTaxid::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2132:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2132 | auto_ptr query( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckQueryCoveragePercent::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3415:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3415 | auto_ptr args; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMaxHspsPerSubject::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3429:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3429 | auto_ptr args; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_DbAndTaxid::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2132:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2132 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -66724,6 +66456,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlast2Seqs::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2178 | auto_ptr query( @@ -66750,13 +66500,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In function 'std::string* blastinput::s_FileContents2String(const char*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1669:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1669 | auto_ptr retval(new string); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastChangeSubject::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2217:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2217 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); @@ -66770,13 +66513,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNucleotideIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1681:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1681 | auto_ptr user_input(s_FileContents2String(fname)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastChangeQuery::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2238:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2238 | auto_ptr query( @@ -66790,38 +66526,8 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp: In member function 'int CBlastxApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' - 274 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' - 274 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -66839,13 +66545,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadGiNuclWithFlankingSpacesIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1735:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1735 | auto_ptr user_input(new string(" 1945386 \n ")); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastMultipleQueries::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2290:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2290 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(qid)); @@ -66859,12 +66558,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastMultipleQueries::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2344:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2344 | auto_ptr sl1( @@ -66891,13 +66584,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNuclWithFlankingSpacesIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1808:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1808 | auto_ptr user_input(new string(" X65215.1 ")); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastnOutOfFrame2::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2494:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2494 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); @@ -66937,19 +66623,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadFastaWithDeflineProteinIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1882:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1882 | auto_ptr user_input(s_FileContents2String(fname)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryBothStrands_SubjBothStrands::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2710:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2710 | auto_ptr query( @@ -67015,6 +66688,30 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp: In member function 'int CBlastpApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' + 275 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' + 275 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryPlusStrand_SubjBothStrands::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2826:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2826 | auto_ptr query( @@ -67041,6 +66738,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjPlusStrand::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2872:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2872 | auto_ptr query( @@ -67054,6 +66761,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjBothStrands::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2895:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2895 | auto_ptr query( @@ -67067,12 +66777,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryWhole_SubjInterval::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2917:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2917 | auto_ptr query(CTestObjMgr::Instance().CreateWholeSSeqLoc(*qid)); @@ -67106,6 +66810,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastOptionsInequality::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3245:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3245 | auto_ptr blastn_options_handle( @@ -67113,6 +66823,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::DiscontiguousMB::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3260:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3260 | auto_ptr query( @@ -67126,12 +66842,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnHumanChrom_MRNA::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3279:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3279 | auto_ptr query( @@ -67159,43 +66869,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp: In member function 'int CBlastnApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' - 320 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' - 320 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptCallbackWithNull::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3514:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3514 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); @@ -67223,19 +66896,38 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp: In member function 'virtual void CBlastFormatterApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:58: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -67244,183 +66936,169 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'ncbi::CArgs* blastargs::CString2Args::CreateCArgs(ncbi::blast::CBlastAppArgs&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3227:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3227 | auto_ptr arg_desc(args.SetCommandLine()); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::PsiBlastAppTestMatrix::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3289:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3289 | auto_ptr args(s2a.CreateCArgs(psiblast_args)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp: In member function 'int CBlastnApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' + 320 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' + 320 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::RpsBlastCBS::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3300:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3300 | auto_ptr args(s2a.CreateCArgs(rpsblast_args)); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMutuallyExclusiveOptions::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3320:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3320 | auto_ptr args; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckDiscoMegablast::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3327:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3327 | auto_ptr args; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckPercentIdentity::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3351:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3351 | auto_ptr args; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckNoGreedyExtension::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3365:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3365 | auto_ptr args; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckCulling::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3387:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3387 | auto_ptr args; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckQueryCoveragePercent::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3415:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3415 | auto_ptr args; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMaxHspsPerSubject::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3429:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3429 | auto_ptr args; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o bdbloader_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/bdbloader_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_formatter +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_formatter +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpstblastn -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpsblast -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -67529,19 +67207,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -67650,19 +67317,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -67681,55 +67339,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -67748,197 +67361,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o bdbloader_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/bdbloader_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o magicblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/magicblast_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o delta_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/delta_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=seedtop -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o deltablast -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/deltablast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp -o blast_report.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_report -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_report +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastn -w -j16 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastx -w -j16 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpstblastn -w -j15 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=seedtop -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -68049,19 +67507,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o delta_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/delta_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -68170,14 +67617,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -68271,7 +67712,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j16 --jobserver-auth=7,8 all /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -68287,9 +67727,110 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp -o blastx_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp -o blastx_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastx_node.o blastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastx +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastx +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastn -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp -o blast_report.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_report +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_report +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd app/blast/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastx -w -j15 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -68398,13 +67939,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -68417,16 +67957,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -68439,46 +67975,93 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o magicblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/magicblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -68587,10 +68170,23 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j15 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -68612,7 +68208,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -68631,52 +68227,157 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp -o blastx_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp -o blastx_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastx_node.o blastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastx -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastx -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o redoalignment_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/redoalignment_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_convert -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp -o blastn_node.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp -o blastn_app.o @@ -68684,53 +68385,27 @@ /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastn make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_convert -w -j16 --jobserver-auth=7,8 all +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o deltablast +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/deltablast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_path -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o redoalignment_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/redoalignment_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp -o blastp_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastp_node.o blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastp -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastp -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_path -w -j15 --jobserver-auth=7,8 all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -68841,22 +68516,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcheck -w -j16 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcmd -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcheck -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -68967,32 +68635,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' - 258 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' - 258 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp -o blastp_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastp_node.o blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastp +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastp +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -69101,8 +68756,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_format_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_format_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcmd -w -j15 --jobserver-auth=7,8 all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcp -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -69211,102 +68890,41 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o psiblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcp -w -j16 --jobserver-auth=7,8 all -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:31: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -69417,6 +69035,282 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -69428,52 +69322,91 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -69489,12 +69422,65 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: @@ -69522,24 +69508,39 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o psiblast +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; @@ -69547,23 +69548,40 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_formatter -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_formatter -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeblastdb -w -j16 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeblastdb -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ @@ -69576,15 +69594,11 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -69612,14 +69626,70 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psiblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blastdb/ && /usr/bin/make -w -j15 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j15 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -69647,6 +69717,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeprofiledb -w -j15 --jobserver-auth=7,8 all +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -69670,6 +69753,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -69757,191 +69846,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -cd app/blastdb/ && /usr/bin/make -w -j16 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeprofiledb -w -j16 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -70052,9 +69992,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70091,12 +70057,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psiblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -70105,11 +70065,56 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70122,12 +70127,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70140,35 +70153,23 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -70198,15 +70199,82 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ @@ -70238,8 +70306,8 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ @@ -70247,14 +70315,25 @@ 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -70267,12 +70346,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -70285,8 +70358,18 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70297,54 +70380,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp: In member function 'int CRPSTBlastnApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' - 251 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' - 251 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, @@ -70357,9 +70410,8 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70371,20 +70423,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70407,12 +70459,14 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70435,14 +70489,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp: In member function 'virtual void BlastdbCopyApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70453,6 +70502,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -70461,72 +70516,51 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -70557,15 +70591,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -70590,12 +70618,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -70607,6 +70629,30 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; @@ -70614,6 +70660,12 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; @@ -70621,109 +70673,130 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp: In member function 'virtual void CBlastDbCheckApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 147 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 73 | auto_ptr arg_desc(new CArgDescriptions); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp: In member function 'virtual void CBlastDbCheckApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 147 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70735,20 +70808,27 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70765,110 +70845,127 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 73 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' + 258 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' + 258 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -70900,15 +70997,9 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -70939,20 +71030,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -70962,21 +71050,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version_api.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/version.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:36: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -71006,118 +71082,89 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:863:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp: In member function 'virtual void BlastdbCopyApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp: In member function 'virtual void CSeedTopApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp: In member function 'virtual void CBlastdbConvertApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:119:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 119 | auto_ptr arg_desc(new CArgDescriptions); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version_api.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/version.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:36: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -71145,103 +71192,108 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:332:17: note: in expansion of macro 'INFO_POST' 332 | INFO_POST("Batch Size: " << batch_size); | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpsblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rpsblast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:863:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp: In member function 'int CRPSTBlastnApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' + 251 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' + 251 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp: In member function 'virtual void CBlastdbConvertApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:119:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 119 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ @@ -71257,27 +71309,24 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:63: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:59: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -71296,25 +71345,15 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp: In member function 'virtual void CSeedTopApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; @@ -71326,13 +71365,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_path -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_path -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: @@ -71366,6 +71398,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_path +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_path +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; @@ -71373,15 +71412,8 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:59: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -71400,13 +71432,38 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp: In member function 'virtual void CMakeBlastDBApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 210 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_SetupArgDescriptions()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:383:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 383 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_InitRPSDbInfo(CRPS_DbInfo&, Int4, Int4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:758:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 758 | if (!rpsDbInfo.aux_file.is_open()) + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:761:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 761 | string freq_str = rpsDbInfo.db_name + ".freq"; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_RPSUpdateStatistics(CRPS_DbInfo&, ncbi::objects::CPssmWithParameters&, Int4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:883:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 883 | auto_ptr > freq_list (CScorematPssmConverter::GetFreqRatios(seq)); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_UpdateFreqRatios(CRPS_DbInfo&, const ncbi::objects::CPssmWithParameters&, Int4, Int4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1063:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1063 | auto_ptr > matrix (CScorematPssmConverter::GetFreqRatios(pssm_p)); + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'int CMakeProfileDBApp::x_Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1382:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] + 1382 | if (m_NumOfVols == m_VolNames.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; @@ -71454,38 +71511,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_SetupArgDescriptions()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:383:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 383 | auto_ptr arg_desc(new CArgDescriptions); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_InitRPSDbInfo(CRPS_DbInfo&, Int4, Int4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:758:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 758 | if (!rpsDbInfo.aux_file.is_open()) - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:761:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 761 | string freq_str = rpsDbInfo.db_name + ".freq"; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_RPSUpdateStatistics(CRPS_DbInfo&, ncbi::objects::CPssmWithParameters&, Int4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:883:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 883 | auto_ptr > freq_list (CScorematPssmConverter::GetFreqRatios(seq)); +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcp.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcp +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcp +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp: In member function 'virtual void CMakeBlastDBApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 210 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_UpdateFreqRatios(CRPS_DbInfo&, const ncbi::objects::CPssmWithParameters&, Int4, Int4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1063:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1063 | auto_ptr > matrix (CScorematPssmConverter::GetFreqRatios(pssm_p)); - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'int CMakeProfileDBApp::x_Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1382:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] - 1382 | if (m_NumOfVols == m_VolNames.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o @@ -71494,18 +71533,19 @@ /bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rpstblastn make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpsblast +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rpsblast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_convert -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_convert -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_aliastool -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_aliastool +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcheck +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcheck make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' @@ -71515,25 +71555,25 @@ /bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seedtop +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seedtop +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcp.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcp -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcp -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcheck -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcheck +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_convert +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_convert make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcmd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcmd -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcmd +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_aliastool +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_aliastool make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' @@ -71544,13 +71584,6 @@ /bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tblastn make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seedtop -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seedtop -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeprofiledb @@ -71559,6 +71592,13 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie blastdbcmd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcmd +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcmd +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -gdwarf-3 -O2 -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeblastdb @@ -71592,95 +71632,95 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds' dh_auto_test - cd c\+\+ && /usr/bin/make -j16 check "TESTSUITEFLAGS=-j16 --verbose" VERBOSE=1 + cd c\+\+ && /usr/bin/make -j15 check "TESTSUITEFLAGS=-j15 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++' if test -s ""; then \ - cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j16 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j15 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ else \ - cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j16 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j15 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[3]: warning: -j16 forced in submake: resetting jobserver mode. +make[3]: warning: -j15 forced in submake: resetting jobserver mode. ====================================================================== make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[4]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C corelib -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +make[4]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C corelib -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -/usr/bin/make -C util -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C util -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C regexp -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C regexp -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project regexp due to unmet requirements: LocalPCRE make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/regexp TMPL=regexp -w -j16 --jobserver-auth=13,14 mark-as-disabled -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/regexp TMPL=regexp -w -j15 --jobserver-auth=13,14 mark-as-disabled +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -/usr/bin/make -C xregexp -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C xregexp -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -/usr/bin/make -C compress -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C compress -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C bzip2 -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C bzip2 -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j16 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j15 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -C zlib -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C zlib -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/zlib TMPL=zlib -w -j16 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/zlib TMPL=zlib -w -j15 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -C api -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' @@ -71688,20 +71728,20 @@ Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" -/usr/bin/make -C tables -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tables -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -/usr/bin/make -C sequtil -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C sequtil -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/make -C bitset -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C bitset -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' @@ -71709,31 +71749,31 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" -/usr/bin/make -C lmdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LocalLMDB.enabled', needed by 'requirements'. Stop. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -/usr/bin/make -C lmdbxx -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdbxx -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdbxx' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdbxx' SKIP -- util/lmdbxx/lmdbxx_sample make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdbxx' @@ -71741,18 +71781,18 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" -/usr/bin/make -C profile -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C profile -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -/usr/bin/make -C connect -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C connect -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C services -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C services -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' @@ -71763,67 +71803,67 @@ /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/make -C cgi -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C cgi -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/usr/bin/make -C html -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C html -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -/usr/bin/make -C build-system -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C build-system -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C helpers -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C helpers -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/helpers' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/helpers' -/usr/bin/make -C project_tree_builder -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C project_tree_builder -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder -/usr/bin/make -C msbuild -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C msbuild -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j16 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j15 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system' -/usr/bin/make -C serial -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C serial -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C datatool -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C datatool -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' @@ -71831,18 +71871,18 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" -/usr/bin/make -C grpc_integration -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C grpc_integration -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/grpc_integration' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -/usr/bin/make -C db -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C db -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C sqlite -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C sqlite -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/db' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/db/sqlite' /bin/echo 'Warning: non-existent sub-project "bdb"' @@ -71850,357 +71890,357 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/db' /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" -/usr/bin/make -C objects -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objects -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C general -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C general -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -/usr/bin/make -C biblio -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biblio -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -/usr/bin/make -C medline -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medline -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -/usr/bin/make -C pub -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pub -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -/usr/bin/make -C seqcode -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqcode -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/make -C seq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make -C seqset -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqset -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -/usr/bin/make -C submit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C submit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/make -C seqedit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqedit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -/usr/bin/make -C seqsplit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqsplit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -C id1 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make -C id2 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make -C entrez2 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrez2 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -C pubmed -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pubmed -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make -C medlars -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medlars -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -C mla -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mla -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -C proj -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C proj -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/proj' -/usr/bin/make -C scoremat -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C scoremat -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -/usr/bin/make -C blastxml -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make -C blastxml2 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml2 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -C mmdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mmdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mmdb' -/usr/bin/make -C cn3d -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cn3d -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/cn3d' -/usr/bin/make -C cdd -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cdd -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/cdd' -/usr/bin/make -C ncbimime -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C ncbimime -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/ncbimime' -/usr/bin/make -C pcsubstance -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcsubstance -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pcsubstance' -/usr/bin/make -C pcassay -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcassay -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pcassay' -/usr/bin/make -C gbseq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbseq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -C insdseq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C insdseq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/insdseq' -/usr/bin/make -C tinyseq -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tinyseq -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/tinyseq' -/usr/bin/make -C biotree -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biotree -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biotree' -/usr/bin/make -C entrezgene -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrezgene -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrezgene' -/usr/bin/make -C omssa -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C omssa -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/omssa' -/usr/bin/make -C remap -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C remap -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/remap' -/usr/bin/make -C seqtest -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqtest -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqtest' -/usr/bin/make -C taxon1 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon1 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make -C taxon3 -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon3 -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/make -C gbproj -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbproj -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbproj' -/usr/bin/make -C trackmgr -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C trackmgr -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/trackmgr' -/usr/bin/make -C valerr -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valerr -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valerr' -/usr/bin/make -C valid -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valid -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -C access -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C access -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/access' -/usr/bin/make -C docsum -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C docsum -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/docsum' -/usr/bin/make -C featdef -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C featdef -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/featdef' -/usr/bin/make -C genomecoll -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genomecoll -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C gc_cli -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C gc_cli -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' SKIP -- objects/genomecoll/gc_cli/gc_cli (unmet build REQUIRES) make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -C homologene -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C homologene -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/homologene' -/usr/bin/make -C mim -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mim -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mim' -/usr/bin/make -C objprt -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C objprt -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/objprt' -/usr/bin/make -C variation -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/make -C macro -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C macro -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/macro' -/usr/bin/make -C genesbyloc -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genesbyloc -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genesbyloc' -/usr/bin/make -C coords -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C coords -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/coords' -/usr/bin/make -C varrep -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C varrep -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/varrep' -/usr/bin/make -C variation_libs -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation_libs -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C dbsnp -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C dbsnp -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C search_by_rsid -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C search_by_rsid -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/search_by_rsid' -/usr/bin/make -C tooltip_service -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C tooltip_service -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/tooltip_service' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs' -/usr/bin/make -C dbsnp -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C dbsnp -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C primary_track -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C primary_track -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/dbsnp' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/dbsnp/primary_track' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/dbsnp' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -/usr/bin/make -C objmgr -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objmgr -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" -/usr/bin/make -C util -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C util -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -/usr/bin/make -C split -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C split -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make -C objtools -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objtools -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C logging -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C logging -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" -/usr/bin/make -C readers -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C readers -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' @@ -72208,87 +72248,87 @@ /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C seqdb_reader -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C seqdb_reader -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -C test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make -C seqdb_writer -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C seqdb_writer -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make -C gene_info_reader -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C gene_info_reader -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" -/usr/bin/make -C services -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C services -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -C blastdb_format -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb_format -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' @@ -72296,21 +72336,21 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C pubseq_gateway -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pubseq_gateway -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "diag"' Warning: non-existent sub-project "diag" /bin/echo 'Warning: non-existent sub-project "cassandra"' Warning: non-existent sub-project "cassandra" -/usr/bin/make -C client -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C client -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' SKIP -- objtools/pubseq_gateway/client/test/test_psg_client_impl (unmet build REQUIRES) make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' @@ -72320,34 +72360,34 @@ /bin/echo 'Warning: non-existent sub-project "cache"' Warning: non-existent sub-project "cache" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -/usr/bin/make -C data_loaders -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C data_loaders -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C genbank -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C genbank -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C cache -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C cache -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" -/usr/bin/make -C id2 -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make -C id1 -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" -/usr/bin/make -C gicache -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C gicache -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' @@ -72355,9 +72395,9 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' @@ -72368,14 +72408,14 @@ /bin/echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders' -/usr/bin/make -C simple -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C simple -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make -C alnmgr -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C alnmgr -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' @@ -72387,77 +72427,77 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" -/usr/bin/make -C eutils -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C eutils -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C egquery -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C egquery -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -/usr/bin/make -C elink -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C elink -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -/usr/bin/make -C epost -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C epost -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -/usr/bin/make -C esearch -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C esearch -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -/usr/bin/make -C espell -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C espell -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -/usr/bin/make -C esummary -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C esummary -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' /bin/echo 'Warning: non-existent sub-project "linkout"' Warning: non-existent sub-project "linkout" -/usr/bin/make -C einfo -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C einfo -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -/usr/bin/make -C uilist -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C uilist -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -/usr/bin/make -C ehistory -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C ehistory -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -/usr/bin/make -C api -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -/usr/bin/make -C edit -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C edit -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/make -C cleanup -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cleanup -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -C format -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C format -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' /bin/echo 'Warning: non-existent sub-project "validator"' @@ -72466,20 +72506,20 @@ Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" -/usr/bin/make -C seqmasks_io -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqmasks_io -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/make -C align_format -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C align_format -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' @@ -72501,78 +72541,78 @@ Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" -/usr/bin/make -C algo -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C algo -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C dustmask -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C dustmask -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/make -C winmask -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmask -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C composition_adjustment -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C composition_adjustment -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/make -C core -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C core -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make -C dbindex -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C dbindex -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C makeindex -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C makeindex -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" -/usr/bin/make -C api -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make -C proteinkmer -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C proteinkmer -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' TEST -- algo/blast/proteinkmer/unit_test/proteinkmer_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -C format -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C format -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make -C blastinput -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastinput -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' @@ -72581,249 +72621,249 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' /bin/echo 'Warning: non-existent sub-project "blast_sra_input"' Warning: non-existent sub-project "blast_sra_input" -/usr/bin/make -C igblast -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C igblast -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" -/usr/bin/make -C unit_tests -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C unit_tests -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C blast_format -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C blast_format -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/make -C seqdb_reader -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C seqdb_reader -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -C api -w -j16 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C api -w -j15 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aalookup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqsrc_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/delta_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntlookup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/setupfactory_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/search_strategy_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/redoalignment_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/queryinfo_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/querydata_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastsetup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastextend_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastdiag_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/optionshandle_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/traceback_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/phiblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/split_query_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/scoreblk_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspstream_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rps_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gapinfo_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blasthits_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/linkhsp_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastengine_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/version_reference_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntscan_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aascan_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/remote_blast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/uniform_search_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastfilter_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastoptions_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/bl2seq_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/stat_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/magicblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_blasthits_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j16 forced in submake: resetting jobserver mode. +make[9]: warning: -j15 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_traceback_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -/usr/bin/make -C segmask -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmask -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' @@ -72849,21 +72889,21 @@ /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -/usr/bin/make -C misc -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C misc -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C third_party -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C third_party -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party' -/usr/bin/make -C third_party_static -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C third_party_static -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party_static' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'mark-as-disabled_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party_static' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party_static' @@ -72885,18 +72925,18 @@ Warning: non-existent sub-project "hgvs" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" -/usr/bin/make -C jsonwrapp -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C jsonwrapp -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -w -j16 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j15 forced in submake: resetting jobserver mode. +/usr/bin/make -C test -w -j15 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' TEST -- misc/jsonwrapp/test/test_jsonwrapp make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -make[8]: warning: -j16 forced in submake: resetting jobserver mode. +make[8]: warning: -j15 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' TEST -- misc/jsonwrapp/test/test_jsonwrapp10 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' @@ -72916,9 +72956,9 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" -/usr/bin/make -C app -w -j16 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C app -w -j15 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j16 forced in submake: resetting jobserver mode. +make[5]: warning: -j15 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' @@ -72933,55 +72973,55 @@ Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" -/usr/bin/make -C blast -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastx make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastx make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/psiblast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/rpsblast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/rpstblastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blast_formatter make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blast_report make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/deltablast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' @@ -73001,67 +73041,67 @@ Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" -/usr/bin/make -C winmasker -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmasker -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -C dustmasker -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C dustmasker -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/make -C segmasker -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmasker -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/make -C blastdb -w -j16 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j15 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j16 forced in submake: resetting jobserver mode. +make[6]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeblastdb make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_aliastool make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcheck make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/convert2blastmask make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcp make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeprofiledb make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_convert make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j16 forced in submake: resetting jobserver mode. +make[7]: warning: -j15 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_path make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' @@ -73222,12 +73262,12 @@ Testing, please wait... -OK -- [serial/datatool] datatool.sh (real 0.34, user 0.24, sys 0.11) +OK -- [serial/datatool] datatool.sh (real 0.51, user 0.33, sys 0.16) SKP -- [serial/datatool] datatool_xml.sh -OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.01, sys 0.01) -OK -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 8.74, user 6.66, sys 2.06) -OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.02, user 0.02, sys 0.01) -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.18, user 0.15, sys 0.06) +OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.05, user 0.02, sys 0.02) +OK -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 11.78, user 9.12, sys 2.64) +OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.09, user 0.03, sys 0.01) +TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.81, user 0.22, sys 0.09) ABS -- [misc/jsonwrapp/test] test_jsonwrapp ABS -- [misc/jsonwrapp/test] test_jsonwrapp10 @@ -73243,120 +73283,127 @@ make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++' c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.18, user 0.15, sys 0.06) +TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.81, user 0.22, sys 0.09) ====================================================================== aascan_unit_test ====================================================================== -3901862/000/0000/PB 943B89A67A729591 0001/0001 2025-02-08T09:52:25.561029 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test -3901862/000/0000/PB 943B89A67A729591 0002/0002 2025-02-08T09:52:25.561265 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.12.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Feb+10+2022+12:17:56&ncbi_app_package_name=blast&ncbi_app_package_version=2.12.0&ncbi_app_package_date=Feb+10+2022+12:17:56&ncbi_app_version=2.12.0 +1859307/000/0000/PB AF285EEB59A2CC11 0001/0001 2024-01-07T04:46:57.311506 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test start /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test +1859307/000/0000/PB AF285EEB59A2CC11 0002/0002 2024-01-07T04:46:57.311775 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder2&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.12.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Feb+10+2022+12:17:56&ncbi_app_package_name=blast&ncbi_app_package_version=2.12.0&ncbi_app_package_date=Feb+10+2022+12:17:56&ncbi_app_version=2.12.0 Running 4 test cases... -3901862/000/0001/RB 943B89A67A729591 0003/0003 2025-02-08T09:52:25.564184 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=2.12.0 -3901862/000/0001/R 943B89A67A729591 0004/0004 2025-02-08T09:52:25.564870 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=943B89A67A7295910000000000010001 -3901862/000/0001/R 943B89A67A729591 0005/0005 2025-02-08T09:52:25.564900 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -3901862/000/0001/R 943B89A67A729591 0006/0006 2025-02-08T09:52:25.565527 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=2 -3901862/000/0001/R 943B89A67A729591 0007/0007 2025-02-08T09:52:25.566340 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0008/0008 2025-02-08T09:52:25.566375 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0009/0009 2025-02-08T09:52:25.566399 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0010/0010 2025-02-08T09:52:25.566420 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0011/0011 2025-02-08T09:52:25.566447 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0012/0012 2025-02-08T09:52:25.566646 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=3 -3901862/000/0001/R 943B89A67A729591 0013/0013 2025-02-08T09:52:25.566935 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=4 -3901862/000/0001/R 943B89A67A729591 0014/0014 2025-02-08T09:52:25.567042 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0015/0015 2025-02-08T09:52:25.567061 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0016/0016 2025-02-08T09:52:25.567092 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0017/0017 2025-02-08T09:52:25.567114 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0018/0018 2025-02-08T09:52:25.567130 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0019/0019 2025-02-08T09:52:25.567206 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=5 -3901862/000/0001/R 943B89A67A729591 0020/0020 2025-02-08T09:52:26.567867 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=6 -3901862/000/0001/R 943B89A67A729591 0021/0021 2025-02-08T09:52:26.568123 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0022/0022 2025-02-08T09:52:26.568160 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0023/0023 2025-02-08T09:52:26.568191 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0024/0024 2025-02-08T09:52:26.568216 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0025/0025 2025-02-08T09:52:26.568241 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0026/0026 2025-02-08T09:52:26.568425 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=7 -3901862/000/0001/R 943B89A67A729591 0027/0027 2025-02-08T09:52:29.069046 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=8 -3901862/000/0001/R 943B89A67A729591 0028/0028 2025-02-08T09:52:29.069240 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0029/0029 2025-02-08T09:52:29.069267 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0030/0030 2025-02-08T09:52:29.069288 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0031/0031 2025-02-08T09:52:29.069316 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0032/0032 2025-02-08T09:52:29.069336 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0033/0033 2025-02-08T09:52:29.069495 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=9 -3901862/000/0001/R 943B89A67A729591 0034/0034 2025-02-08T09:52:33.820082 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=10 -3901862/000/0001/R 943B89A67A729591 0035/0035 2025-02-08T09:52:33.820301 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0036/0036 2025-02-08T09:52:33.820328 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0037/0037 2025-02-08T09:52:33.820349 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0038/0038 2025-02-08T09:52:33.820369 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0039/0039 2025-02-08T09:52:33.820388 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0040/0040 2025-02-08T09:52:33.820700 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=11 -3901862/000/0001/R 943B89A67A729591 0041/0041 2025-02-08T09:52:41.946290 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=12 -3901862/000/0001/R 943B89A67A729591 0042/0042 2025-02-08T09:52:41.946506 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0043/0043 2025-02-08T09:52:41.946533 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0044/0044 2025-02-08T09:52:41.946554 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0045/0045 2025-02-08T09:52:41.946580 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0046/0046 2025-02-08T09:52:41.946600 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0047/0047 2025-02-08T09:52:41.946781 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=13 -3901862/000/0001/R 943B89A67A729591 0048/0048 2025-02-08T09:52:55.134943 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=14 -3901862/000/0001/R 943B89A67A729591 0049/0049 2025-02-08T09:52:55.135169 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0050/0050 2025-02-08T09:52:55.135198 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0051/0051 2025-02-08T09:52:55.135223 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0052/0052 2025-02-08T09:52:55.135245 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0053/0053 2025-02-08T09:52:55.135267 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0054/0054 2025-02-08T09:52:55.135462 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=15 -3901862/000/0001/R 943B89A67A729591 0055/0055 2025-02-08T09:53:15.917387 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=16 -3901862/000/0001/R 943B89A67A729591 0056/0056 2025-02-08T09:53:15.917625 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0057/0057 2025-02-08T09:53:15.917660 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0058/0058 2025-02-08T09:53:15.917689 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0059/0059 2025-02-08T09:53:15.917715 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0060/0060 2025-02-08T09:53:15.917752 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0061/0061 2025-02-08T09:53:15.917952 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=17 -3901862/000/0001/R 943B89A67A729591 0062/0062 2025-02-08T09:53:45.918536 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=18 -3901862/000/0001/R 943B89A67A729591 0063/0063 2025-02-08T09:53:45.918749 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0064/0064 2025-02-08T09:53:45.918775 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0065/0065 2025-02-08T09:53:45.918797 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0066/0066 2025-02-08T09:53:45.918817 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0067/0067 2025-02-08T09:53:45.918837 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/R 943B89A67A729591 0068/0068 2025-02-08T09:53:45.919048 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=19 -3901862/000/0001/R 943B89A67A729591 0069/0069 2025-02-08T09:54:15.919715 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test extra issued_subhit=20 -3901862/000/0001/R 943B89A67A729591 0070/0070 2025-02-08T09:54:15.919933 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0001/R 943B89A67A729591 0071/0071 2025-02-08T09:54:15.919960 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0001/R 943B89A67A729591 0072/0072 2025-02-08T09:54:15.919982 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0001/R 943B89A67A729591 0073/0073 2025-02-08T09:54:15.920002 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0001/R 943B89A67A729591 0074/0074 2025-02-08T09:54:15.920027 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0001/RE 943B89A67A729591 0075/0075 2025-02-08T09:54:15.920407 ionos15-amd64 UNK_CLIENT 943B89A67A729591_0001SID aascan_unit_test request-stop 500 110.356218099 0 0 +1859307/000/0001/RB AF285EEB59A2CC11 0003/0003 2024-01-07T04:46:57.315203 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=2.12.0 +1859307/000/0001/R AF285EEB59A2CC11 0004/0004 2024-01-07T04:46:57.315997 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=AF285EEB59A2CC110000000000010001 +1859307/000/0001/R AF285EEB59A2CC11 0005/0005 2024-01-07T04:46:57.316060 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 +1859307/000/0001/R AF285EEB59A2CC11 0006/0006 2024-01-07T04:46:57.317615 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=2 +1859307/000/0001/R AF285EEB59A2CC11 0007/0007 2024-01-07T04:46:57.318688 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0008/0008 2024-01-07T04:46:57.318731 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0009/0009 2024-01-07T04:46:57.318759 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0010/0010 2024-01-07T04:46:57.318785 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0011/0011 2024-01-07T04:46:57.318809 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0012/0012 2024-01-07T04:46:57.319083 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=3 +1859307/000/0001/R AF285EEB59A2CC11 0013/0013 2024-01-07T04:46:57.319477 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=4 +1859307/000/0001/R AF285EEB59A2CC11 0014/0014 2024-01-07T04:46:57.319638 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0015/0015 2024-01-07T04:46:57.319667 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0016/0016 2024-01-07T04:46:57.319702 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0017/0017 2024-01-07T04:46:57.319729 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0018/0018 2024-01-07T04:46:57.319752 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0019/0019 2024-01-07T04:46:57.319871 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=5 +1859307/000/0001/R AF285EEB59A2CC11 0020/0020 2024-01-07T04:46:58.322604 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=6 +1859307/000/0001/R AF285EEB59A2CC11 0021/0021 2024-01-07T04:46:58.322847 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0022/0022 2024-01-07T04:46:58.322878 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0023/0023 2024-01-07T04:46:58.322901 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0024/0024 2024-01-07T04:46:58.322922 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0025/0025 2024-01-07T04:46:58.322942 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0026/0026 2024-01-07T04:46:58.323126 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=7 +1859307/000/0001/R AF285EEB59A2CC11 0027/0027 2024-01-07T04:47:00.824575 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=8 +1859307/000/0001/R AF285EEB59A2CC11 0028/0028 2024-01-07T04:47:00.824807 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0029/0029 2024-01-07T04:47:00.824836 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0030/0030 2024-01-07T04:47:00.824866 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0031/0031 2024-01-07T04:47:00.824888 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0032/0032 2024-01-07T04:47:00.824907 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0033/0033 2024-01-07T04:47:00.825091 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=9 +1859307/000/0001/R AF285EEB59A2CC11 0034/0034 2024-01-07T04:47:05.576630 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=10 +1859307/000/0001/R AF285EEB59A2CC11 0035/0035 2024-01-07T04:47:05.576886 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0036/0036 2024-01-07T04:47:05.576915 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0037/0037 2024-01-07T04:47:05.576938 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0038/0038 2024-01-07T04:47:05.576958 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0039/0039 2024-01-07T04:47:05.576979 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0040/0040 2024-01-07T04:47:05.577297 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=11 +1859307/000/0001/R AF285EEB59A2CC11 0041/0041 2024-01-07T04:47:13.702967 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=12 +1859307/000/0001/R AF285EEB59A2CC11 0042/0042 2024-01-07T04:47:13.703202 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0043/0043 2024-01-07T04:47:13.703230 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0044/0044 2024-01-07T04:47:13.703259 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0045/0045 2024-01-07T04:47:13.703283 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0046/0046 2024-01-07T04:47:13.703302 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0047/0047 2024-01-07T04:47:13.703521 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=13 +1859307/000/0001/R AF285EEB59A2CC11 0048/0048 2024-01-07T04:47:26.891682 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=14 +1859307/000/0001/R AF285EEB59A2CC11 0049/0049 2024-01-07T04:47:26.891885 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0050/0050 2024-01-07T04:47:26.891912 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0051/0051 2024-01-07T04:47:26.891934 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0052/0052 2024-01-07T04:47:26.891954 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0053/0053 2024-01-07T04:47:26.891973 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0054/0054 2024-01-07T04:47:26.892196 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=15 +1859307/000/0001/R AF285EEB59A2CC11 0055/0055 2024-01-07T04:47:47.674372 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=16 +1859307/000/0001/R AF285EEB59A2CC11 0056/0056 2024-01-07T04:47:47.674623 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0057/0057 2024-01-07T04:47:47.674650 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0058/0058 2024-01-07T04:47:47.674681 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0059/0059 2024-01-07T04:47:47.674704 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0060/0060 2024-01-07T04:47:47.674723 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0061/0061 2024-01-07T04:47:47.674920 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=17 +1859307/000/0001/R AF285EEB59A2CC11 0062/0062 2024-01-07T04:48:17.676614 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=18 +1859307/000/0001/R AF285EEB59A2CC11 0063/0063 2024-01-07T04:48:17.676882 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0064/0064 2024-01-07T04:48:17.676909 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0065/0065 2024-01-07T04:48:17.676931 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0066/0066 2024-01-07T04:48:17.676950 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0067/0067 2024-01-07T04:48:17.676970 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0068/0068 2024-01-07T04:48:17.677176 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=19 +1859307/000/0001/R AF285EEB59A2CC11 0069/0069 2024-01-07T04:48:47.680625 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test extra issued_subhit=20 +1859307/000/0001/R AF285EEB59A2CC11 0070/0070 2024-01-07T04:48:47.680908 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0001/R AF285EEB59A2CC11 0071/0071 2024-01-07T04:48:47.680939 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0001/R AF285EEB59A2CC11 0072/0072 2024-01-07T04:48:47.680976 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0001/R AF285EEB59A2CC11 0073/0073 2024-01-07T04:48:47.681000 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0001/R AF285EEB59A2CC11 0074/0074 2024-01-07T04:48:47.681021 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0001/RE AF285EEB59A2CC11 0075/0075 2024-01-07T04:48:47.681441 i-capture-the-hostname UNK_CLIENT AF285EEB59A2CC11_0001SID aascan_unit_test request-stop 500 110.366234064 0 0 unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: CORELIB(CLoaderException::eConnectionFailed) "c++/include/corelib/ncbidiag.hpp", line 254: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: CORELIB(CLoaderException::eConnectionFailed) "c++/include/corelib/ncbidiag.hpp", line 1840: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL ./c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. -3901862/000/0002/RB 943B89A67A729591 0078/0078 2025-02-08T09:54:15.921146 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=2.12.0 -3901862/000/0002/R 943B89A67A729591 0079/0079 2025-02-08T09:54:15.921260 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=943B89A67A7295910000000000020002 -3901862/000/0002/R 943B89A67A729591 0080/0080 2025-02-08T09:54:15.921276 ionos15-amd64 UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -3901862/000/0002/R 943B89A67A729591 0081/0081 2025-02-08T09:54:45.925006 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test extra issued_subhit=2 -3901862/000/0002/R 943B89A67A729591 0082/0082 2025-02-08T09:54:45.925218 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0002/R 943B89A67A729591 0083/0083 2025-02-08T09:54:45.925245 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0002/R 943B89A67A729591 0084/0084 2025-02-08T09:54:45.925269 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0002/R 943B89A67A729591 0085/0085 2025-02-08T09:54:45.925289 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0002/R 943B89A67A729591 0086/0086 2025-02-08T09:54:45.925308 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0002/R 943B89A67A729591 0087/0087 2025-02-08T09:54:45.925465 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test extra issued_subhit=3 -3901862/000/0002/R 943B89A67A729591 0088/0088 2025-02-08T09:55:15.927123 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test extra issued_subhit=4 -3901862/000/0002/R 943B89A67A729591 0089/0089 2025-02-08T09:55:15.927330 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -3901862/000/0002/R 943B89A67A729591 0090/0090 2025-02-08T09:55:15.927363 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown -3901862/000/0002/R 943B89A67A729591 0091/0091 2025-02-08T09:55:15.927385 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos15-amd64.debian.net&platform=x86_64-pc-linux-gnu": Unknown -3901862/000/0002/R 943B89A67A729591 0092/0092 2025-02-08T09:55:15.927404 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -3901862/000/0002/R 943B89A67A729591 0093/0093 2025-02-08T09:55:15.927424 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -3901862/000/0002/R 943B89A67A729591 0094/0094 2025-02-08T09:55:15.927592 ionos15-amd64 UNK_CLIENT 943B89A67A729E51_0002SID aascan_unit_test extra issued_subhit=5 +1859307/000/0002/RB AF285EEB59A2CC11 0078/0078 2024-01-07T04:48:47.682226 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=2.12.0 +1859307/000/0002/R AF285EEB59A2CC11 0079/0079 2024-01-07T04:48:47.682354 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=AF285EEB59A2CC110000000000020002 +1859307/000/0002/R AF285EEB59A2CC11 0080/0080 2024-01-07T04:48:47.682369 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 +1859307/000/0002/R AF285EEB59A2CC11 0081/0081 2024-01-07T04:49:17.685351 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test extra issued_subhit=2 +1859307/000/0002/R AF285EEB59A2CC11 0082/0082 2024-01-07T04:49:17.685644 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0002/R AF285EEB59A2CC11 0083/0083 2024-01-07T04:49:17.685675 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0002/R AF285EEB59A2CC11 0084/0084 2024-01-07T04:49:17.685701 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0002/R AF285EEB59A2CC11 0085/0085 2024-01-07T04:49:17.685723 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0002/R AF285EEB59A2CC11 0086/0086 2024-01-07T04:49:17.685744 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0002/R AF285EEB59A2CC11 0087/0087 2024-01-07T04:49:17.685938 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test extra issued_subhit=3 +1859307/000/0002/R AF285EEB59A2CC11 0088/0088 2024-01-07T04:49:47.688796 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test extra issued_subhit=4 +1859307/000/0002/R AF285EEB59A2CC11 0089/0089 2024-01-07T04:49:47.689083 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0002/R AF285EEB59A2CC11 0090/0090 2024-01-07T04:49:47.689110 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0002/R AF285EEB59A2CC11 0091/0091 2024-01-07T04:49:47.689133 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0002/R AF285EEB59A2CC11 0092/0092 2024-01-07T04:49:47.689153 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0002/R AF285EEB59A2CC11 0093/0093 2024-01-07T04:49:47.689172 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0002/R AF285EEB59A2CC11 0094/0094 2024-01-07T04:49:47.689350 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test extra issued_subhit=5 +1859307/000/0002/R AF285EEB59A2CC11 0095/0095 2024-01-07T04:50:17.692652 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test extra issued_subhit=6 +1859307/000/0002/R AF285EEB59A2CC11 0096/0096 2024-01-07T04:50:17.692945 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#13000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +1859307/000/0002/R AF285EEB59A2CC11 0097/0097 2024-01-07T04:50:17.692972 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu] Failed to connect: Unknown +1859307/000/0002/R AF285EEB59A2CC11 0098/0098 2024-01-07T04:50:17.692994 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnu": Unknown +1859307/000/0002/R AF285EEB59A2CC11 0099/0099 2024-01-07T04:50:17.693014 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +1859307/000/0002/R AF285EEB59A2CC11 0100/0100 2024-01-07T04:50:17.693033 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +1859307/000/0002/R AF285EEB59A2CC11 0101/0101 2024-01-07T04:50:17.693222 i-capture-the-hostname UNK_CLIENT AF285EEB59A2D4D1_0002SID aascan_unit_test extra issued_subhit=7 Maximum execution time of 200 second(s) is exceeded -real 200.18 -user 0.15 -sys 0.06 -Start time : 02/08/2025 09:52:25 -Stop time : 02/08/2025 09:55:45 -Load averages: 4.08 15.23 23.49 +real 200.81 +user 0.22 +sys 0.09 +Start time : 01/07/2024 04:46:57 +Stop time : 01/07/2024 04:50:18 +Load averages: 28.04 31.49 41.39 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 143 @@ -73582,8 +73629,8 @@ dh_md5sums -O--sourcedirectory=c\+\+ dh_builddeb -O--sourcedirectory=c\+\+ dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.12.0+ds-3_amd64.deb'. -dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.12.0+ds-3_amd64.deb'. dpkg-deb: building package 'ncbi-blast+-legacy' in '../ncbi-blast+-legacy_2.12.0+ds-3_all.deb'. +dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.12.0+ds-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-blast+_2.12.0+ds-3_amd64.buildinfo dpkg-genchanges --build=binary -O../ncbi-blast+_2.12.0+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -73592,12 +73639,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1228674/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3679501 and its subdirectories -I: Current time: Fri Feb 7 21:59:12 -12 2025 -I: pbuilder-time-stamp: 1739008752 +I: removing directory /srv/workspace/pbuilder/1228674 and its subdirectories +I: Current time: Sun Jan 7 18:57:25 +14 2024 +I: pbuilder-time-stamp: 1704603445