Diff of the two buildlogs: -- --- b1/build.log 2023-06-04 10:52:08.687890512 +0000 +++ b2/build.log 2023-06-04 10:54:36.441418994 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jun 3 22:41:24 -12 2023 -I: pbuilder-time-stamp: 1685875284 +I: Current time: Sun Jul 7 07:15:19 +14 2024 +I: pbuilder-time-stamp: 1720286119 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./pbcopper_2.0.0+dfsg.orig.tar.xz] I: copying [./pbcopper_2.0.0+dfsg-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Thu Feb 24 05:34:18 2022 -12 +gpgv: Signature made Fri Feb 25 07:34:18 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,135 +30,167 @@ dpkg-source: info: applying skip_test_Parallel_FireAndForget.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3588383/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 7 07:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='886999ef306e45558bb1ef72a13505ae' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3588383' - PS1='# ' - PS2='> ' + INVOCATION_ID=de82dbd6a04640519a6cbadf29e85142 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1704943 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.omkkr9xA/pbuilderrc_jxPs --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.omkkr9xA/b1 --logfile b1/build.log pbcopper_2.0.0+dfsg-2.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.omkkr9xA/pbuilderrc_XUfu --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.omkkr9xA/b2 --logfile b2/build.log --extrapackages usrmerge pbcopper_2.0.0+dfsg-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos1-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-0.deb11.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.20-2~bpo11+1 (2023-04-23) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more - -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount - -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed - lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3588383/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 2023 more + -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount + -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 Jul 7 07:15 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 2023 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -284,7 +316,7 @@ Get: 72 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] -Fetched 50.3 MB in 2s (23.1 MB/s) +Fetched 50.3 MB in 1s (83.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) @@ -596,8 +628,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/pbcopper-2.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbcopper_2.0.0+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/pbcopper-2.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pbcopper_2.0.0+dfsg-2_source.changes dpkg-buildpackage: info: source package pbcopper dpkg-buildpackage: info: source version 2.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -666,112 +709,115 @@ Found ninja-1.11.1 at /usr/bin/ninja dh_auto_build -O--builddirectory=build - cd build && LC_ALL=C.UTF-8 ninja -j15 -v + cd build && LC_ALL=C.UTF-8 ninja -j16 -v [1/164] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 2.0.0 /build/pbcopper-2.0.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [2/164] /usr/bin/meson --internal vcstagger ../src/LibraryGitHash.h.in src/LibraryGitHash.h 2.0.0 /build/pbcopper-2.0.0+dfsg/src @COPPER_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [3/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -MF src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o.d -o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -c src/utility/PbcopperGitHash.cpp -[4/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -MF tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o.d -o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o -c ../tests/src/align/test_GlobalLocalAlignment.cpp -[5/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_align_test_Seeds.cpp.o -MF 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tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp +[108/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o -MF src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o.d -o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o -c ../src/third-party/sparc/sparc.cpp In file included from /usr/include/string.h:535, from /usr/include/c++/12/cstring:42, from ../src/third-party/sparc/sparc.cpp:7: @@ -787,42 +833,38 @@ ../src/third-party/sparc/sparc.cpp:160:50: note: ‘temp_arr’ declared here 160 | boost::container::small_vector temp_arr(10); | ^~~~~~~~ -[106/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -MF tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o -c ../tests/src/data/test_Accuracy.cpp -[107/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o -MF src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o.d -o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o -c ../src/poa/RangeFinder.cpp -[108/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp -[109/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o -MF src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o.d -o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o -c ../src/poa/PoaGraphTraversals.cpp -[110/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp -[111/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -MF tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o.d -o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o -c ../tests/src/cli2/test_VersionPrinter.cpp +[109/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Frames.cpp.o -MF tests/pbcopper_test.p/src_data_test_Frames.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Frames.cpp.o -c ../tests/src/data/test_Frames.cpp +[110/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o -MF src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o.d -o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o -c ../src/poa/PoaGraphTraversals.cpp +[111/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o -c ../tests/src/dagcon/test_Alignment.cpp [112/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o -MF src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o.d -o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o -c ../src/reports/ReportPrinter.cpp -[113/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp -[114/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp +[113/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -MF tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o.d -o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o -c ../tests/src/data/test_GenomicInterval.cpp +[114/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -MF tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o.d -o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o -c ../tests/src/dagcon/test_AlignmentGraph.cpp [115/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -MF tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o.d -o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o -c ../tests/src/data/test_QualityValues.cpp -[116/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -MF tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o.d -o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o -c ../tests/src/data/test_IntervalTree.cpp -[117/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -MF tests/pbcopper_test.p/src_data_test_MovieName.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o -c ../tests/src/data/test_MovieName.cpp -[118/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -MF tests/pbcopper_test.p/src_data_test_Cigar.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o -c ../tests/src/data/test_Cigar.cpp -[119/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict 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tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -MF tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -c ../tests/src/data/test_MappedRead.cpp -[135/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp +[131/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o -c ../tests/src/pbmer/test_DbgNode.cpp +[132/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -MF tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o.d -o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o -c ../tests/src/data/test_MappedRead.cpp +[133/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o -c ../tests/src/parallel/test_FireAndForget.cpp +[134/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o -c ../tests/src/pbmer/test_Parser.cpp +[135/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp [136/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o -c ../tests/src/pbmer/test_Dbg.cpp -[137/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp -[138/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp -[139/164] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o -[140/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o -c ../tests/src/pbmer/test_Mers.cpp -[141/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp +[137/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp +[138/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o -c ../tests/src/pbmer/test_DnaBit.cpp +[139/164] c++ -Isrc/libpbcopper.so.2.0.0.p -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o -MF src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o.d -o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o -c ../src/poa/PoaGraphImpl.cpp +[140/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp ../tests/src/parallel/test_FireAndForgetIndexed.cpp: In member function ‘virtual void Parallel_FireAndForgetIndexed_strings_Test::TestBody()’: ../tests/src/parallel/test_FireAndForgetIndexed.cpp:15:25: warning: unused variable ‘numElements’ [-Wunused-variable] 15 | static const size_t numElements = 10000; @@ -830,35 +872,36 @@ ../tests/src/parallel/test_FireAndForgetIndexed.cpp:28:10: warning: variable ‘Submit’ set but not used [-Wunused-but-set-variable] 28 | auto Submit = [&vec](size_t index, size_t data) { vec[index] += data; }; | ^~~~~~ -[142/164] c++ -o src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.2.0.0 -Wl,--end-group -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -[143/164] /usr/bin/meson --internal symbolextractor /build/pbcopper-2.0.0+dfsg/build src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/libpbcopper.so.2.0.0.symbols -[144/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -MF tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o.d -o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o -c ../tests/src/pbmer/test_KFGraph.cpp -[145/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp -[146/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp -[147/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp +[141/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -MF tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o.d -o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o -c ../tests/src/parallel/test_WorkQueue.cpp +[142/164] rm -f src/libpbcopper.a && gcc-ar csrD src/libpbcopper.a src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o +[143/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp +[144/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Base64.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o -c ../tests/src/utility/test_Base64.cpp +[145/164] c++ -o src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperGitHash.cpp.o src/libpbcopper.so.2.0.0.p/LibraryInfo.cpp.o src/libpbcopper.so.2.0.0.p/algorithm_Heteroduplex.cpp.o src/libpbcopper.so.2.0.0.p/align_AffineAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_AlignConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_BandedChainAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_ChainSeedsConfig.cpp.o src/libpbcopper.so.2.0.0.p/align_EdlibAlign.cpp.o src/libpbcopper.so.2.0.0.p/align_FindSeeds.cpp.o src/libpbcopper.so.2.0.0.p/align_GlobalLocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LinearAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_LocalAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_PairwiseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_Seed.cpp.o src/libpbcopper.so.2.0.0.p/align_Seeds.cpp.o src/libpbcopper.so.2.0.0.p/align_SparseAlignment.cpp.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw.c.o src/libpbcopper.so.2.0.0.p/align_cssw_ssw_cpp.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CLI.cpp.o src/libpbcopper.so.2.0.0.p/cli2_CommandLineParser.cpp.o src/libpbcopper.so.2.0.0.p/cli2_HelpMetrics.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Interface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_InterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterface.cpp.o src/libpbcopper.so.2.0.0.p/cli2_MultiToolInterfaceHelpPrinter.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Option.cpp.o src/libpbcopper.so.2.0.0.p/cli2_OptionValue.cpp.o src/libpbcopper.so.2.0.0.p/cli2_PositionalArgumentTranslator.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Result.cpp.o src/libpbcopper.so.2.0.0.p/cli2_Results.cpp.o src/libpbcopper.so.2.0.0.p/cli2_VersionPrinter.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_Alignment.cpp.o src/libpbcopper.so.2.0.0.p/dagcon_AlignmentGraph.cpp.o src/libpbcopper.so.2.0.0.p/data_Accuracy.cpp.o src/libpbcopper.so.2.0.0.p/data_Cigar.cpp.o src/libpbcopper.so.2.0.0.p/data_CigarOperation.cpp.o src/libpbcopper.so.2.0.0.p/data_Clipping.cpp.o src/libpbcopper.so.2.0.0.p/data_FrameEncoders.cpp.o src/libpbcopper.so.2.0.0.p/data_Frames.cpp.o src/libpbcopper.so.2.0.0.p/data_GenomicInterval.cpp.o src/libpbcopper.so.2.0.0.p/data_Interval.cpp.o src/libpbcopper.so.2.0.0.p/data_IntervalTree.cpp.o src/libpbcopper.so.2.0.0.p/data_MappedRead.cpp.o src/libpbcopper.so.2.0.0.p/data_MovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValue.cpp.o src/libpbcopper.so.2.0.0.p/data_QualityValues.cpp.o src/libpbcopper.so.2.0.0.p/data_Read.cpp.o src/libpbcopper.so.2.0.0.p/data_ReadId.cpp.o src/libpbcopper.so.2.0.0.p/data_RSMovieName.cpp.o src/libpbcopper.so.2.0.0.p/data_SNR.cpp.o src/libpbcopper.so.2.0.0.p/data_Strand.cpp.o src/libpbcopper.so.2.0.0.p/logging_Logging.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogConfig.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogLevel.cpp.o src/libpbcopper.so.2.0.0.p/logging_LogMessage.cpp.o src/libpbcopper.so.2.0.0.p/math_FishersExact.cpp.o src/libpbcopper.so.2.0.0.p/parallel_FireAndForget.cpp.o src/libpbcopper.so.2.0.0.p/parallel_ThreadCount.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Dbg.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DbgNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_DnaBit.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Kmer.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFGraph.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_KFNode.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Mers.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_SparseHaplotype.cpp.o src/libpbcopper.so.2.0.0.p/pbmer_Parser.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaAlignmentMatrix.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaConsensus.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraph.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphImpl.cpp.o src/libpbcopper.so.2.0.0.p/poa_PoaGraphTraversals.cpp.o src/libpbcopper.so.2.0.0.p/poa_RangeFinder.cpp.o src/libpbcopper.so.2.0.0.p/poa_SparsePoa.cpp.o src/libpbcopper.so.2.0.0.p/reports_Report.cpp.o src/libpbcopper.so.2.0.0.p/reports_ReportPrinter.cpp.o src/libpbcopper.so.2.0.0.p/reports_TaskReport.cpp.o src/libpbcopper.so.2.0.0.p/third-party_base64_base64.cpp.o src/libpbcopper.so.2.0.0.p/third-party_edlib_edlib.cpp.o src/libpbcopper.so.2.0.0.p/third-party_htslib_kfunc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_kalloc.c.o src/libpbcopper.so.2.0.0.p/third-party_ksw2_ksw2_simde.c.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparc.cpp.o src/libpbcopper.so.2.0.0.p/third-party_sparc_sparcSimple.cpp.o src/libpbcopper.so.2.0.0.p/utility_Alarm.cpp.o src/libpbcopper.so.2.0.0.p/utility_Base64.cpp.o src/libpbcopper.so.2.0.0.p/utility_Deleters.cpp.o src/libpbcopper.so.2.0.0.p/utility_MemoryConsumption.cpp.o src/libpbcopper.so.2.0.0.p/utility_Stopwatch.cpp.o src/libpbcopper.so.2.0.0.p/utility_StringUtils.cpp.o src/libpbcopper.so.2.0.0.p/utility_TimeReporter.cpp.o src/libpbcopper.so.2.0.0.p/meson-generated_.._utility_PbcopperVersion.cpp.o -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.2.0.0 -Wl,--end-group -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread +[146/164] /usr/bin/meson --internal symbolextractor /build/pbcopper-2.0.0+dfsg/build src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0 src/libpbcopper.so.2.0.0.p/libpbcopper.so.2.0.0.symbols +[147/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp [148/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o -c ../tests/src/utility/test_Alarm.cpp -[149/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp -[150/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -MF tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o -c ../tests/src/poa/test_SparsePoa.cpp -[151/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o -c ../tests/src/utility/test_Stopwatch.cpp -[152/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o -c ../tests/src/utility/test_MinMax.cpp -[153/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -MF tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o -c ../tests/src/utility/test_Ssize.cpp -[154/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_reports_test_Report.cpp.o -MF tests/pbcopper_test.p/src_reports_test_Report.cpp.o.d -o tests/pbcopper_test.p/src_reports_test_Report.cpp.o -c ../tests/src/reports/test_Report.cpp +[149/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o -c ../tests/src/utility/test_FileUtils.cpp +[150/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -MF tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o -c ../tests/src/utility/test_OStreamRedirect.cpp +[151/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread 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-g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -MF tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o.d -o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o -c ../tests/src/poa/test_PoaConsensus.cpp +[156/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond 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-Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -MF tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o -c ../tests/src/utility/test_TimeReporter.cpp -[160/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread 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tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp -[162/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp +[160/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_data_test_Read.cpp.o -MF tests/pbcopper_test.p/src_data_test_Read.cpp.o.d -o tests/pbcopper_test.p/src_data_test_Read.cpp.o -c ../tests/src/data/test_Read.cpp +[161/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -MF tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o -c ../tests/src/utility/test_PartitionElements.cpp +[162/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -MF tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o -c ../tests/src/utility/test_StringUtils.cpp [163/164] c++ -Itests/pbcopper_test.p -Itests -I../tests -Iinclude -I../include -I../tests/include -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB -pthread -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -MF tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o.d -o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o -c ../tests/src/utility/test_MoveInsert.cpp [164/164] c++ -o tests/pbcopper_test tests/pbcopper_test.p/src_algorithm_test_Heteroduplex.cpp.o tests/pbcopper_test.p/src_align_test_Alignment.cpp.o tests/pbcopper_test.p/src_align_test_BandedChainAlign.cpp.o tests/pbcopper_test.p/src_align_test_EdlibAlign.cpp.o tests/pbcopper_test.p/src_align_test_GlobalLocalAlignment.cpp.o tests/pbcopper_test.p/src_align_test_Seeds.cpp.o tests/pbcopper_test.p/src_cli2_test_CLI.cpp.o tests/pbcopper_test.p/src_cli2_test_CommandLineParser.cpp.o tests/pbcopper_test.p/src_cli2_test_InterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_OptionValue.cpp.o tests/pbcopper_test.p/src_cli2_test_PositionalArgumentTranslator.cpp.o tests/pbcopper_test.p/src_cli2_test_Results.cpp.o tests/pbcopper_test.p/src_cli2_test_VersionPrinter.cpp.o tests/pbcopper_test.p/src_dagcon_test_Alignment.cpp.o tests/pbcopper_test.p/src_dagcon_test_AlignmentGraph.cpp.o tests/pbcopper_test.p/src_data_test_Accuracy.cpp.o tests/pbcopper_test.p/src_data_test_Cigar.cpp.o tests/pbcopper_test.p/src_data_test_Frames.cpp.o tests/pbcopper_test.p/src_data_test_GenomicInterval.cpp.o tests/pbcopper_test.p/src_data_test_Interval.cpp.o tests/pbcopper_test.p/src_data_test_IntervalTree.cpp.o tests/pbcopper_test.p/src_data_test_MappedRead.cpp.o tests/pbcopper_test.p/src_data_test_MovieName.cpp.o tests/pbcopper_test.p/src_data_test_QualityValues.cpp.o tests/pbcopper_test.p/src_data_test_Read.cpp.o tests/pbcopper_test.p/src_data_test_ReadName.cpp.o tests/pbcopper_test.p/src_data_test_RSMovieName.cpp.o tests/pbcopper_test.p/src_data_test_RSReadName.cpp.o tests/pbcopper_test.p/src_data_test_SNR.cpp.o tests/pbcopper_test.p/src_json_test_JSON.cpp.o tests/pbcopper_test.p/src_library_test_Library.cpp.o tests/pbcopper_test.p/src_logging_test_Logging.cpp.o tests/pbcopper_test.p/src_math_test_ConfusionMatrix.cpp.o tests/pbcopper_test.p/src_math_test_FishersExact.cpp.o tests/pbcopper_test.p/src_parallel_test_WorkQueue.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForget.cpp.o tests/pbcopper_test.p/src_parallel_test_FireAndForgetIndexed.cpp.o tests/pbcopper_test.p/src_pbmer_test_Dbg.cpp.o tests/pbcopper_test.p/src_pbmer_test_DbgNode.cpp.o tests/pbcopper_test.p/src_pbmer_test_DnaBit.cpp.o tests/pbcopper_test.p/src_pbmer_test_KFGraph.cpp.o tests/pbcopper_test.p/src_pbmer_test_Kmer.cpp.o tests/pbcopper_test.p/src_pbmer_test_Mers.cpp.o tests/pbcopper_test.p/src_pbmer_test_Parser.cpp.o tests/pbcopper_test.p/src_poa_test_PoaConsensus.cpp.o tests/pbcopper_test.p/src_poa_test_SparsePoa.cpp.o tests/pbcopper_test.p/src_qgram_test_Index.cpp.o tests/pbcopper_test.p/src_reports_test_Report.cpp.o tests/pbcopper_test.p/src_utility_test_Alarm.cpp.o tests/pbcopper_test.p/src_utility_test_Base64.cpp.o tests/pbcopper_test.p/src_utility_test_FileUtils.cpp.o tests/pbcopper_test.p/src_utility_test_MinMax.cpp.o tests/pbcopper_test.p/src_utility_test_MoveAppend.cpp.o tests/pbcopper_test.p/src_utility_test_MoveInsert.cpp.o tests/pbcopper_test.p/src_utility_test_OStreamRedirect.cpp.o tests/pbcopper_test.p/src_utility_test_PartitionElements.cpp.o tests/pbcopper_test.p/src_utility_test_Shuffle.cpp.o tests/pbcopper_test.p/src_utility_test_Ssize.cpp.o tests/pbcopper_test.p/src_utility_test_Stopwatch.cpp.o tests/pbcopper_test.p/src_utility_test_StringUtils.cpp.o tests/pbcopper_test.p/src_utility_test_TimeReporter.cpp.o tests/pbcopper_test.p/src_third-party_sparc_test_SparcConsensus.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/pbcopper-2.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 '-Wl,-rpath,$ORIGIN/../src' -Wl,-rpath-link,/build/pbcopper-2.0.0+dfsg/build/src -Wl,--start-group src/libpbcopper.so.2.0.0 /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a -lpthread -Wl,--end-group -pthread debian/rules override_dh_auto_test make[1]: Entering directory '/build/pbcopper-2.0.0+dfsg' cd build && meson test --no-rebuild --print-errorlogs -1/3 pbcopper formatting check OK 0.23s -2/3 pbcopper EOF check OK 9.97s -3/3 pbcopper gtest unittests OK 25.24s +1/3 pbcopper formatting check OK 0.03s +2/3 pbcopper EOF check OK 1.08s +3/3 pbcopper gtest unittests OK 2.64s Ok: 3 Expected Fail: 0 @@ -1064,8 +1107,8 @@ dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build -dpkg-deb: building package 'libpbcopper2.0.0-dbgsym' in '../libpbcopper2.0.0-dbgsym_2.0.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'libpbcopper2.0.0' in '../libpbcopper2.0.0_2.0.0+dfsg-2_amd64.deb'. +dpkg-deb: building package 'libpbcopper2.0.0-dbgsym' in '../libpbcopper2.0.0-dbgsym_2.0.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_2.0.0+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pbcopper_2.0.0+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../pbcopper_2.0.0+dfsg-2_amd64.changes @@ -1074,12 +1117,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1704943/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3588383 and its subdirectories -I: Current time: Sat Jun 3 22:52:06 -12 2023 -I: pbuilder-time-stamp: 1685875926 +I: removing directory /srv/workspace/pbuilder/1704943 and its subdirectories +I: Current time: Sun Jul 7 07:17:44 +14 2024 +I: pbuilder-time-stamp: 1720286264