Diff of the two buildlogs: -- --- b1/build.log 2024-01-10 10:22:38.614441972 +0000 +++ b2/build.log 2024-01-10 10:25:03.016947270 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 9 22:21:17 -12 2024 -I: pbuilder-time-stamp: 1704882077 +I: Current time: Wed Feb 12 06:45:57 +14 2025 +I: pbuilder-time-stamp: 1739292357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -26,49 +26,81 @@ dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.1-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1073952/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 11 16:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='adaf479455b14d6bb12fd10f5a12292d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1073952' - PS1='# ' - PS2='> ' + INVOCATION_ID=9f37e2c94f5845eea68d82a238d037b1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=253965 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.r4XkOMEl/pbuilderrc_MyMW --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.r4XkOMEl/b1 --logfile b1/build.log schroedinger-coordgenlibs_3.0.1-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.r4XkOMEl/pbuilderrc_oHR5 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.r4XkOMEl/b2 --logfile b2/build.log schroedinger-coordgenlibs_3.0.1-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.5.0-0.deb12.4-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.5.10-1~bpo12+1 (2023-11-23) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash @@ -126,15 +158,15 @@ -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts + -rwxr-xr-x 1 root root 27560 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash + lrwxrwxrwx 1 root root 9 Feb 11 16:46 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 23 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile + -rwxr-xr-x 1 root root 14520 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server @@ -154,7 +186,7 @@ -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew -I: user script /srv/workspace/pbuilder/1073952/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -271,7 +303,7 @@ Get: 65 http://deb.debian.org/debian bookworm/main amd64 libmaeparser1 amd64 1.3.0-1 [88.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libmaeparser-dev amd64 1.3.0-1 [13.4 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] -Fetched 56.7 MB in 12s (4844 kB/s) +Fetched 56.7 MB in 2s (31.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18148 files and directories currently installed.) @@ -554,7 +586,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.1-1_source.changes +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.1-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.1-1 dpkg-buildpackage: info: source distribution unstable @@ -600,7 +636,7 @@ -- Build files have been written to: /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.1 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -613,30 +649,30 @@ make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' [ 4%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -[ 9%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -[ 23%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -[ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -[ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -[ 33%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -[ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -[ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -[ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -[ 57%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o +[ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o +[ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o +[ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/CoordgenFragmentBuilder.cpp +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/CoordgenFragmenter.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/CoordgenMacrocycleBuilder.cpp -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizer.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/CoordgenMinimizer.cpp +[ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o +[ 28%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/CoordgenTemplates.cpp -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/CoordgenFragmenter.cpp +[ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o +[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizer.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerAtom.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerBond.cpp +[ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerFragment.cpp -[ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o +[ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o +[ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerMarchingSquares.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerMolecule.cpp +[ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerResidue.cpp +[ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerResidueInteraction.cpp [ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -std=gnu++11 -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/sketcherMinimizerRing.cpp @@ -656,20 +692,20 @@ make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.1 /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/test/CMakeFiles/test_smilesparser.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build -make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' -make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' +make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build +make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' -[ 76%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o -[ 80%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.1\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -std=gnu++11 -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/test/test_coordgen.cpp -[ 85%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -std=gnu++11 -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/example_dir/example.cpp +[ 76%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o +[ 80%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o +[ 85%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -std=gnu++11 -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/test/test_smilesparser.cpp +cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -std=gnu++11 -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/example_dir/example.cpp +cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.1\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Werror -std=gnu++11 -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/test/test_coordgen.cpp [ 90%] Linking CXX executable example cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/example.dir/example.cpp.o -o example -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu ../libcoordgen.so.3.0.1 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 @@ -689,10 +725,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' dh_auto_test - cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=--verbose ARGS\+=-j15 + cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j15 +/usr/bin/ctest --force-new-ctest-process --verbose -j16 UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu/DartConfiguration.tcl @@ -724,26 +760,26 @@ 3: Test timeout computed to be: 1500 1: (-50, 0) (0, 0) 1/3 Test #1: example .......................... Passed 0.01 sec -3: Running 16 test cases... -3: -3: *** No errors detected -3:  -2/3 Test #3: test_smilesparser ................ Passed 1.94 sec 2: Running 16 test cases... 2: 2: *** No errors detected 2:  -3/3 Test #2: test_coordgen .................... Passed 2.22 sec +2/3 Test #2: test_coordgen .................... Passed 2.88 sec +3: Running 16 test cases... +3: +3: *** No errors detected +3:  +3/3 Test #3: test_smilesparser ................ Passed 2.93 sec 100% tests passed, 0 tests failed out of 3 -Total Test time (real) = 2.22 sec +Total Test time (real) = 2.93 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install - cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.1 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -807,12 +843,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/253965/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1073952 and its subdirectories -I: Current time: Tue Jan 9 22:22:38 -12 2024 -I: pbuilder-time-stamp: 1704882158 +I: removing directory /srv/workspace/pbuilder/253965 and its subdirectories +I: Current time: Wed Feb 12 06:48:18 +14 2025 +I: pbuilder-time-stamp: 1739292498