Diff of the two buildlogs: -- --- b1/build.log 2025-03-06 09:04:00.042341305 +0000 +++ b2/build.log 2025-03-06 09:05:31.890221256 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Mar 5 21:01:31 -12 2025 -I: pbuilder-time-stamp: 1741251691 +I: Current time: Thu Apr 9 05:27:01 +14 2026 +I: pbuilder-time-stamp: 1775662021 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,54 +28,86 @@ dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/26838/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 8 15:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='7764506dff634d2ca68a7c7d08621d41' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='26838' - PS1='# ' - PS2='> ' + INVOCATION_ID=4f95509741fa4b40b984a543c449384b + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=63375 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.N0B7eutf/pbuilderrc_OX9k --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.N0B7eutf/b1 --logfile b1/build.log ivar_1.4.4+dfsg-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.N0B7eutf/pbuilderrc_fgMo --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.N0B7eutf/b2 --logfile b2/build.log ivar_1.4.4+dfsg-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/26838/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -207,7 +239,7 @@ Get: 92 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.21+ds-1 [506 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.4-1 [335 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.21+ds-1 [1725 kB] -Fetched 40.8 MB in 1s (49.2 MB/s) +Fetched 40.8 MB in 0s (111 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19787 files and directories currently installed.) @@ -598,7 +630,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -685,7 +721,7 @@ config.status: creating config.h config.status: executing depfiles commands dh_auto_build - make -j11 + make -j21 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' @@ -694,71 +730,90 @@ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp +Using built-in specs. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mUsing built-in specs. +x32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 14.2.0 (Debian 14.2.0-17) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cczyKJB1.s +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 14.2.0 (Debian 14.2.0-17) g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cckPY47b.s COLLECT_GCC=g++ +Using built-in specs. Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccxBTuyb.s -Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccFLH8jq.s COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp Using built-in specs. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cc4jpukm.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccer7ycU.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. COLLECT_GCC=g++ -Using built-in specs. -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto -COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus - -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccbcXhgq.s +Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) +Using built-in specs. +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cc2qaCNV.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp +Using built-in specs. COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cppUsing built-in specs. - -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccVOsVoG.s --v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2COLLECT_GCC=g++ +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp +COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) - call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cppCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map -Werror=format-security=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' ' -Wall -Wextra-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccGJIPpu.s + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccqVk1h7.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp +COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix @@ -766,53 +821,30 @@ gcc version 14.2.0 (Debian 14.2.0-17) Using built-in specs. COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccASBVL7.s -COLLECT_GCC=g++ + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccYcW2RB.s +Using built-in specs. COLLECT_GCC=g++ Target: i686-linux-gnu -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14--enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable- --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-ver--enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-ify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mlibstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-lify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto -inux-gnu --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-lThread model: posix -inux-gnu -Supported LTO compression algorithms: zlibThread model: posix - zstdSupported LTO compression algorithms: zlib - zstdgcc version 14.2.0 (Debian 14.2.0-17) - +Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnuCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map -D_GNU_SOURCE -D=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quietUsing built-in specs. - -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -g -quiet -O2 -v -Wdate-time -Wformat=1 -I . -Werror=format-security -I -Wall .. -Wextra -imultiarch -Werror i386-linux-gnu -version -D_GNU_SOURCE -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -D -fstack-protector-strong -ffloat-store HAVE_CONFIG_H -fasynchronous-unwind-tables -D -o _FORTIFY_SOURCE=2 /tmp/ccJDbKeJ.s primer_bed.cpp - -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccmE3n5v.s + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccVE5B2N.s COLLECT_GCC=g++ -GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, Target: i686-linux-gnu +Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccPaAf14.s +Using built-in specs. +GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) + compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cc3R2xCe.s -ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" -ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" -#include "..." search starts here: -#include <...> search starts here: - . - .. - /usr/include/c++/14 - /usr/include/i386-linux-gnu/c++/14 - /usr/include/c++/14/backward - /usr/lib/gcc/i686-linux-gnu/14/include - /usr/local/include - /usr/include/i386-linux-gnu - /usr/include -End of search list. GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP @@ -834,11 +866,17 @@ /usr/include/i386-linux-gnu /usr/include End of search list. +Using built-in specs. GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP +COLLECT_GCC=g++ GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -Using built-in specs. +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 14.2.0 (Debian 14.2.0-17) ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" @@ -855,32 +893,36 @@ /usr/local/include /usr/include/i386-linux-gnu /usr/include +End of search list. +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, End of search list. -GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP + compiled by GNU C version 14.2.0, /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarchignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" + i386-linux-gnu -D_GNU_SOURCEGMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP -ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" -ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" -ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -#include "..." search starts here: + -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" + parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-extignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" + .cpp -mtune=genericignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" + -march=i686 -g -g -O2ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" + -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.#include "..." search starts here: + -fstack-protector-strongGGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 #include <...> search starts here: - . - .. - /usr/include/c++/14 - /usr/include/i386-linux-gnu/c++/14 + -ffloat-store . + -fasynchronous-unwind-tables .. + -o /usr/include/c++/14 + /tmp/ccoG3kpp.s /usr/include/i386-linux-gnu/c++/14 + /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. +COLLECT_GCC=g++ +Target: i686-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 14.2.0 (Debian 14.2.0-17) ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" @@ -895,21 +937,27 @@ /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include +Using built-in specs. /usr/include/i386-linux-gnu /usr/include End of search list. +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccKCpIaN.s +GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) + compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) + compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-17) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapGNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, =/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quietGMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP - - -v -I .GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 - -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cczJhIXj.signoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" @@ -923,19 +971,41 @@ /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" /usr/include/i386-linux-gnu /usr/include End of search list. - +ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' 'ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" +-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' +#include "..." search starts here: +#include <...> search starts here: + . + /usr/libexec/gcc/i686-linux-gnu/14/cc1plus .. + -quiet /usr/include/c++/14 + -v /usr/include/i386-linux-gnu/c++/14 + -I /usr/include/c++/14/backward + . /usr/lib/gcc/i686-linux-gnu/14/include + -I /usr/local/include + .. /usr/include/i386-linux-gnu + -imultiarch /usr/include + i386-linux-gnuEnd of search list. + -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cc19aPD2.s GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" -ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" +GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) + compiled by GNU C version 14.2.0, ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" +GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP + ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 #include "..." search starts here: #include <...> search starts here: . @@ -948,14 +1018,6 @@ /usr/include/i386-linux-gnu /usr/include End of search list. -GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" @@ -968,12 +1030,16 @@ /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward -ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. +GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) + compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" @@ -1011,15 +1077,19 @@ /usr/include/i386-linux-gnu /usr/include End of search list. -Compiler executable checksum: Compiler executable checksum: f317f3eb1707ebc438072dc45f38fa2d375b5f61fac7379d5be9617dc7 -9de97d -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d +GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) + compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) + compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP + ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" @@ -1027,44 +1097,17 @@ #include "..." search starts here: #include <...> search starts here: . +ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" .. /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include +ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" /usr/include/i386-linux-gnu /usr/include End of search list. -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o alignment.o /tmp/cc4jpukm.s -GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'alignment.' -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp -Using built-in specs. -COLLECT_GCC=g++ -Target: i686-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-17' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 14.2.0 (Debian 14.2.0-17) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccdJ5BzG.s -GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" -ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" @@ -1080,27 +1123,6 @@ /usr/include/i386-linux-gnu /usr/include End of search list. -Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o remove_reads_from_amplicon.o /tmp/cczJhIXj.s -GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 -COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccAd2qqJ.s -GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) - compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" @@ -1119,22 +1141,6 @@ /usr/include End of search list. Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccXYFJv7.s GNU C++17 (Debian 14.2.0-17) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP @@ -1157,68 +1163,98 @@ /usr/include End of search list. Compiler executable checksum: f317eb07c4382d5ffa375b61c79de97d -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o interval_tree.o /tmp/cc19aPD2.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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'-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o allele_functions.o /tmp/ccYcW2RB.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'interval_tree.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_masked_amplicons.' COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'allele_functions.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o get_common_variants.o /tmp/ccPaAf14.s +GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o primer_bed.o /tmp/ccmE3n5v.s + as -v -I . -I .. --gdwarf-5 --32 -o primer_bed.o /tmp/ccGJIPpu.s +GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o ref_seq.o /tmp/ccKCpIaN.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o suffix_tree.o /tmp/ccVOsVoG.s + as -v -I . -I .. --gdwarf-5 --32 -o suffix_tree.o /tmp/ccer7ycU.s +GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o call_variants.o /tmp/ccqVk1h7.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_common_variants.' +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_variants.' +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ref_seq.' +COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ +LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'primer_bed.' COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'suffix_tree.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o call_consensus_pileup.o /tmp/ccm7fMaf.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o ivar.o /tmp/cczyKJB1.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_consensus_pileup.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o trim_primer_quality.o /tmp/ccbcXhgq.s + as -v -I . -I .. --gdwarf-5 --32 -o trim_primer_quality.o /tmp/cc7U83nj.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o ref_seq.o /tmp/ccAd2qqJ.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' + as -v -I . -I .. --gdwarf-5 --32 -o call_consensus_pileup.o /tmp/cckPY47b.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'trim_primer_quality.' COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ref_seq.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_consensus_pileup.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' - as -v -I . -I .. --gdwarf-5 --32 -o parse_gff.o /tmp/ccdJ5BzG.s + as -v -I . -I .. --gdwarf-5 --32 -o parse_gff.o /tmp/ccoG3kpp.s GNU assembler version 2.44 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.44 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ @@ -1235,7 +1271,7 @@ COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' - /usr/libexec/gcc/i686-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccGZ5xua.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o + /usr/libexec/gcc/i686-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/cc1vAw6j.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making all in tests @@ -1358,7 +1394,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - make -j11 install DESTDIR=/build/reproducible-path/ivar-1.4.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no + make -j21 install DESTDIR=/build/reproducible-path/ivar-1.4.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' @@ -1374,7 +1410,7 @@ COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' - /usr/libexec/gcc/i686-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccA8FLCf.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o + /usr/libexec/gcc/i686-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccj3Lyyi.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. @@ -1410,7 +1446,7 @@ if [ -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed ] \ ; then chmod -v -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \ ; fi -mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) +mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0775 (rwxrwxr-x) to 0664 (rw-rw-r--) make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_fixperms dh_missing @@ -1422,9 +1458,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.4+dfsg-1_i386.deb'. -dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_i386.deb'. dpkg-deb: building package 'ivar-doc' in '../ivar-doc_1.4.4+dfsg-1_all.deb'. +dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_i386.deb'. +dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.4+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../ivar_1.4.4+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../ivar_1.4.4+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1432,12 +1468,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/63375/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26838 and its subdirectories -I: Current time: Wed Mar 5 21:03:59 -12 2025 -I: pbuilder-time-stamp: 1741251839 +I: removing directory /srv/workspace/pbuilder/63375 and its subdirectories +I: Current time: Thu Apr 9 05:28:30 +14 2026 +I: pbuilder-time-stamp: 1775662110