Diff of the two buildlogs: -- --- b1/build.log 2025-02-14 09:14:04.836434715 +0000 +++ b2/build.log 2025-02-14 09:38:12.327304963 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Feb 13 20:46:10 -12 2025 -I: pbuilder-time-stamp: 1739522770 +I: Current time: Fri Mar 20 05:37:08 +14 2026 +I: pbuilder-time-stamp: 1773934628 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -49,54 +49,86 @@ dpkg-source: info: applying graphviz_compat.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/48130/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 19 15:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='dcd380466f5b47358bdd73ef11007993' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='48130' - PS1='# ' - PS2='> ' + INVOCATION_ID=0024464088ae4a9c885b5e83ac585fb7 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26370 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bdN7Cssb/pbuilderrc_ASWR --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bdN7Cssb/b1 --logfile b1/build.log snakemake_7.32.4-7.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bdN7Cssb/pbuilderrc_g4f7 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bdN7Cssb/b2 --logfile b2/build.log snakemake_7.32.4-7.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/48130/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -642,7 +674,7 @@ Get: 406 http://deb.debian.org/debian trixie/main i386 r-cran-shiny all 1.10.0+dfsg-1 [3139 kB] Get: 407 http://deb.debian.org/debian trixie/main i386 r-cran-rmarkdown all 2.29+dfsg-1 [1473 kB] Get: 408 http://deb.debian.org/debian trixie/main i386 stress i386 1.0.7-1 [22.5 kB] -Fetched 258 MB in 7s (36.0 MB/s) +Fetched 258 MB in 7s (39.4 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19794 files and directories currently installed.) @@ -1946,8 +1978,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Feb 14 08:47:26 UTC 2025. -Universal Time is now: Fri Feb 14 08:47:26 UTC 2025. +Local time is now: Thu Mar 19 15:38:33 UTC 2026. +Universal Time is now: Thu Mar 19 15:38:33 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up liberror-perl (0.17029-2) ... @@ -2354,7 +2386,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../snakemake_7.32.4-7_source.changes +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/snakemake-7.32.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../snakemake_7.32.4-7_source.changes dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 7.32.4-7 dpkg-buildpackage: info: source distribution unstable @@ -2384,111 +2420,111 @@ running build running build_py creating build/lib/snakemake -copying snakemake/dag.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake -copying snakemake/stats.py -> build/lib/snakemake -copying snakemake/script.py -> build/lib/snakemake -copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake -copying snakemake/resources.py -> build/lib/snakemake -copying snakemake/persistence.py -> build/lib/snakemake -copying snakemake/parser.py -> build/lib/snakemake -copying snakemake/_version.py -> build/lib/snakemake -copying snakemake/modules.py -> build/lib/snakemake -copying snakemake/profiles.py -> build/lib/snakemake -copying snakemake/ruleinfo.py -> build/lib/snakemake -copying snakemake/target_jobs.py -> build/lib/snakemake -copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake -copying snakemake/__init__.py -> build/lib/snakemake -copying snakemake/__main__.py -> build/lib/snakemake +copying snakemake/logging.py -> build/lib/snakemake +copying snakemake/shell.py -> build/lib/snakemake +copying snakemake/sourcecache.py -> build/lib/snakemake +copying snakemake/interfaces.py -> build/lib/snakemake +copying snakemake/decorators.py -> build/lib/snakemake +copying snakemake/ruleinfo.py -> build/lib/snakemake +copying snakemake/script.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake +copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake +copying snakemake/parser.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake +copying snakemake/modules.py -> build/lib/snakemake +copying snakemake/resources.py -> build/lib/snakemake +copying snakemake/rules.py -> build/lib/snakemake +copying snakemake/persistence.py -> build/lib/snakemake +copying snakemake/target_jobs.py -> build/lib/snakemake +copying snakemake/__init__.py -> build/lib/snakemake +copying snakemake/stats.py -> build/lib/snakemake +copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake +copying snakemake/_version.py -> build/lib/snakemake +copying snakemake/profiles.py -> build/lib/snakemake +copying snakemake/utils.py -> build/lib/snakemake +copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake -copying snakemake/rules.py -> build/lib/snakemake +copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake -copying snakemake/output_index.py -> build/lib/snakemake -copying snakemake/utils.py -> build/lib/snakemake -copying snakemake/interfaces.py -> build/lib/snakemake -copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake -copying snakemake/shell.py -> build/lib/snakemake -copying snakemake/logging.py -> build/lib/snakemake -copying snakemake/decorators.py -> build/lib/snakemake -creating build/lib/snakemake/caching -copying snakemake/caching/hash.py -> build/lib/snakemake/caching -copying snakemake/caching/__init__.py -> build/lib/snakemake/caching -copying snakemake/caching/local.py -> build/lib/snakemake/caching -copying snakemake/caching/remote.py -> build/lib/snakemake/caching +copying snakemake/dag.py -> build/lib/snakemake +creating build/lib/snakemake/report +copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report +copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common +creating build/lib/snakemake/deployment +copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment +copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment +copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment +copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment +copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment +creating build/lib/snakemake/executors +copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors +copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors +copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors +copying snakemake/executors/__init__.py -> build/lib/snakemake/executors +copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors +copying snakemake/executors/common.py -> build/lib/snakemake/executors +copying snakemake/executors/flux.py -> build/lib/snakemake/executors +creating build/lib/snakemake/unit_tests +copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests +creating build/lib/snakemake/linting +copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting +copying snakemake/linting/rules.py -> build/lib/snakemake/linting +copying snakemake/linting/__init__.py -> build/lib/snakemake/linting +copying snakemake/linting/links.py -> build/lib/snakemake/linting +creating build/lib/snakemake/caching +copying snakemake/caching/local.py -> build/lib/snakemake/caching +copying snakemake/caching/__init__.py -> build/lib/snakemake/caching +copying snakemake/caching/remote.py -> build/lib/snakemake/caching +copying snakemake/caching/hash.py -> build/lib/snakemake/caching +creating build/lib/snakemake/template_rendering +copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering +copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering +copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/remote -copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote -copying snakemake/remote/FTP.py -> build/lib/snakemake/remote -copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote -copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote +copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote -copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote -copying snakemake/remote/gfal.py -> build/lib/snakemake/remote +copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote +copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote +copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote +copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote +copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote +copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote +copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote -copying snakemake/remote/webdav.py -> build/lib/snakemake/remote +copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote -copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote -copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote -creating build/lib/snakemake/report -copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report -copying snakemake/report/__init__.py -> build/lib/snakemake/report -creating build/lib/snakemake/template_rendering -copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering -copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering -copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering -creating build/lib/snakemake/linting -copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting -copying snakemake/linting/__init__.py -> build/lib/snakemake/linting -copying snakemake/linting/rules.py -> build/lib/snakemake/linting -copying snakemake/linting/links.py -> build/lib/snakemake/linting -creating build/lib/snakemake/executors -copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors -copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors -copying snakemake/executors/flux.py -> build/lib/snakemake/executors -copying snakemake/executors/common.py -> build/lib/snakemake/executors -copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors -copying snakemake/executors/__init__.py -> build/lib/snakemake/executors -copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors -creating build/lib/snakemake/unit_tests -copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests -creating build/lib/snakemake/deployment -copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment -copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment -copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment -copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment -copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data -copying snakemake/report/data/common.py -> build/lib/snakemake/report/data +copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data +copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data +copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data -copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data -copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data -copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data +copying snakemake/report/data/common.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components creating build/lib/snakemake/executors/slurm -copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm -copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm +copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm +copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake @@ -2497,27 +2533,27 @@ copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template -copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components -copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components +copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates UPDATING build/lib/snakemake/_version.py @@ -2527,142 +2563,142 @@ running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/snakemake -copying build/lib/snakemake/dag.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/stats.py -> build/bdist.linux-i686/wheel/./snakemake -creating build/bdist.linux-i686/wheel/snakemake/caching -copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-i686/wheel/./snakemake/caching -copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/caching -copying build/lib/snakemake/caching/local.py -> build/bdist.linux-i686/wheel/./snakemake/caching -copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-i686/wheel/./snakemake/caching -creating build/bdist.linux-i686/wheel/snakemake/common -copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-i686/wheel/./snakemake/common -copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/common -copying build/lib/snakemake/script.py -> build/bdist.linux-i686/wheel/./snakemake -creating build/bdist.linux-i686/wheel/snakemake/remote -copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-i686/wheel/./snakemake/remote -copying build/lib/snakemake/benchmark.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/gui.py -> build/bdist.linux-i686/wheel/./snakemake creating build/bdist.linux-i686/wheel/snakemake/report +copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-i686/wheel/./snakemake/report creating build/bdist.linux-i686/wheel/snakemake/report/template -copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-i686/wheel/./snakemake/report/template copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-i686/wheel/./snakemake/report/template copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/report/template -copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-i686/wheel/./snakemake/report/template creating build/bdist.linux-i686/wheel/snakemake/report/template/components -copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components -copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-i686/wheel/./snakemake/report/template/components +copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-i686/wheel/./snakemake/report/template +copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-i686/wheel/./snakemake/report/template +copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/report creating build/bdist.linux-i686/wheel/snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-i686/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-i686/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-i686/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-i686/wheel/./snakemake/report/data +copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-i686/wheel/./snakemake/report/data +copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-i686/wheel/./snakemake/report/data +copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-i686/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-i686/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-i686/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-i686/wheel/./snakemake/report/data -copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-i686/wheel/./snakemake/report/data -copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-i686/wheel/./snakemake/report -copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/report -copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-i686/wheel/./snakemake -creating build/bdist.linux-i686/wheel/snakemake/template_rendering -copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-i686/wheel/./snakemake/template_rendering -copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/template_rendering -copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-i686/wheel/./snakemake/template_rendering +copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-i686/wheel/./snakemake/report/data +copying build/lib/snakemake/report.css -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/logging.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/shell.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/interfaces.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/decorators.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/script.py -> build/bdist.linux-i686/wheel/./snakemake +creating build/bdist.linux-i686/wheel/snakemake/common +copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-i686/wheel/./snakemake/common +copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/common +creating build/bdist.linux-i686/wheel/snakemake/deployment +copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-i686/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-i686/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-i686/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/deployment +copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-i686/wheel/./snakemake/deployment +copying build/lib/snakemake/wrapper.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/__main__.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/exceptions.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/parser.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/notebook.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/modules.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-i686/wheel/./snakemake -creating build/bdist.linux-i686/wheel/snakemake/linting -copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-i686/wheel/./snakemake/linting -copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/linting -copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-i686/wheel/./snakemake/linting -copying build/lib/snakemake/linting/links.py -> build/bdist.linux-i686/wheel/./snakemake/linting +copying build/lib/snakemake/rules.py -> build/bdist.linux-i686/wheel/./snakemake creating build/bdist.linux-i686/wheel/snakemake/executors -copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-i686/wheel/./snakemake/executors -copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-i686/wheel/./snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-i686/wheel/./snakemake/executors -copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-i686/wheel/./snakemake/executors -copying build/lib/snakemake/executors/common.py -> build/bdist.linux-i686/wheel/./snakemake/executors -copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-i686/wheel/./snakemake/executors -copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-i686/wheel/./snakemake/executors creating build/bdist.linux-i686/wheel/snakemake/executors/slurm -copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-i686/wheel/./snakemake/executors/slurm -copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-i686/wheel/./snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/executors/slurm -copying build/lib/snakemake/persistence.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/parser.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-i686/wheel/./snakemake/executors/slurm +copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-i686/wheel/./snakemake/executors/slurm +copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-i686/wheel/./snakemake/executors +copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/executors +copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-i686/wheel/./snakemake/executors +copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-i686/wheel/./snakemake/executors +copying build/lib/snakemake/executors/common.py -> build/bdist.linux-i686/wheel/./snakemake/executors +copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-i686/wheel/./snakemake/executors creating build/bdist.linux-i686/wheel/snakemake/unit_tests creating build/bdist.linux-i686/wheel/snakemake/unit_tests/templates +copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-i686/wheel/./snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-i686/wheel/./snakemake/unit_tests/templates -copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/unit_tests -copying build/lib/snakemake/_version.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/modules.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/report.css -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/profiles.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-i686/wheel/./snakemake +creating build/bdist.linux-i686/wheel/snakemake/linting +copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-i686/wheel/./snakemake/linting +copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-i686/wheel/./snakemake/linting +copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/linting +copying build/lib/snakemake/linting/links.py -> build/bdist.linux-i686/wheel/./snakemake/linting +copying build/lib/snakemake/persistence.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/jobs.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/gui.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/__init__.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/__main__.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/wrapper.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/exceptions.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/notebook.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/stats.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/benchmark.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/_version.py -> build/bdist.linux-i686/wheel/./snakemake +creating build/bdist.linux-i686/wheel/snakemake/caching +copying build/lib/snakemake/caching/local.py -> build/bdist.linux-i686/wheel/./snakemake/caching +copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/caching +copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-i686/wheel/./snakemake/caching +copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-i686/wheel/./snakemake/caching +copying build/lib/snakemake/profiles.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/utils.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/output_index.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/rules.py -> build/bdist.linux-i686/wheel/./snakemake +copying build/lib/snakemake/jobs.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/output_index.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/utils.py -> build/bdist.linux-i686/wheel/./snakemake -creating build/bdist.linux-i686/wheel/snakemake/deployment -copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-i686/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-i686/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-i686/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-i686/wheel/./snakemake/deployment -copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/deployment -copying build/lib/snakemake/interfaces.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-i686/wheel/./snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/shell.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/logging.py -> build/bdist.linux-i686/wheel/./snakemake -copying build/lib/snakemake/decorators.py -> build/bdist.linux-i686/wheel/./snakemake +creating build/bdist.linux-i686/wheel/snakemake/template_rendering +copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-i686/wheel/./snakemake/template_rendering +copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/template_rendering +copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-i686/wheel/./snakemake/template_rendering +creating build/bdist.linux-i686/wheel/snakemake/remote +copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-i686/wheel/./snakemake/remote +copying build/lib/snakemake/dag.py -> build/bdist.linux-i686/wheel/./snakemake running install_egg_info running egg_info creating snakemake.egg-info @@ -2680,7 +2716,7 @@ Copying snakemake.egg-info to build/bdist.linux-i686/wheel/./snakemake-7.32.4.egg-info running install_scripts creating build/bdist.linux-i686/wheel/snakemake-7.32.4.dist-info/WHEEL -creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/.tmp-cpe0ay5k/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it +creating '/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/.tmp-lj9nlua7/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' @@ -2982,9 +3018,9 @@ copying downloadable files... [100%] tests/test_report/expected-results/report.html copying static files... +Writing evaluated template result to /build/reproducible-path/snakemake-7.32.4/docs/_build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/snakemake-7.32.4/docs/_build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/snakemake-7.32.4/docs/_build/html/_static/documentation_options.js -Writing evaluated template result to /build/reproducible-path/snakemake-7.32.4/docs/_build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/snakemake-7.32.4/docs/_build/html/_static/js/versions.js copying static files: done copying extra files... @@ -3118,7 +3154,7 @@ cachedir: .pytest_cache rootdir: /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build configfile: pyproject.toml -plugins: typeguard-4.4.1, requests_mock-1.12.1, mock-3.14.0 +plugins: mock-3.14.0, requests_mock-1.12.1, typeguard-4.4.1 collecting ... collected 395 items / 99 deselected / 296 selected .pybuild/cpython3_3.13_snakemake/build/tests/test_expand.py::test_simple_expand PASSED [ 0%] @@ -3133,34 +3169,34 @@ .pybuild/cpython3_3.13_snakemake/build/tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED [ 3%] .pybuild/cpython3_3.13_snakemake/build/tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] .pybuild/cpython3_3.13_snakemake/build/tests/test_kubernetes.py::test_issue1041 SKIPPED [ 4%] -.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[envvars-positive] SKIPPED [ 4%] -.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[envvars-negative] SKIPPED [ 4%] -.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[not_used_params-positive] SKIPPED [ 5%] -.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[not_used_params-negative] SKIPPED [ 5%] 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+.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[path_add-positive] SKIPPED [ 5%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[path_add-negative] SKIPPED [ 5%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[version-positive] SKIPPED [ 5%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[version-negative] SKIPPED [ 6%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[missing_software_definition-positive] SKIPPED [ 6%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[missing_software_definition-negative] SKIPPED [ 6%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[long_run-positive] SKIPPED [ 7%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[long_run-negative] SKIPPED [ 7%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[envvars-positive] SKIPPED [ 7%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[envvars-negative] SKIPPED [ 8%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[iofile_by_index-positive] SKIPPED [ 8%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[iofile_by_index-negative] SKIPPED [ 8%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[mixed_func_and_rules-positive] SKIPPED [ 9%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[mixed_func_and_rules-negative] SKIPPED [ 9%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[tab_usage-positive] SKIPPED [ 9%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[tab_usage-negative] SKIPPED [ 10%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[log_directive-positive] SKIPPED [ 10%] +.pybuild/cpython3_3.13_snakemake/build/tests/test_linting.py::test_lint[log_directive-negative] SKIPPED [ 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.pybuild/cpython3_3.13_snakemake/build/tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] .pybuild/cpython3_3.13_snakemake/build/tests/test_schema.py::test_config PASSED [ 14%] .pybuild/cpython3_3.13_snakemake/build/tests/test_schema.py::test_config_ref PASSED [ 14%] @@ -3379,37 +3415,55 @@ .pybuild/cpython3_3.13_snakemake/build/tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] .pybuild/cpython3_3.13_snakemake/build/tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] .pybuild/cpython3_3.13_snakemake/build/tests/tests.py::test_issue1331 Timeout (0:01:00)! -Thread 0xdf5f8b40 (most recent call first): - File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker +Thread 0xe0efbb40 (most recent call first): + File "/usr/lib/python3.13/subprocess.py", line 2026 in _try_wait + File "/usr/lib/python3.13/subprocess.py", line 2068 in _wait + File "/usr/lib/python3.13/subprocess.py", line 1276 in wait + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/shell.py", line 284 in __new__ + File "/tmp/snakemake-jpdt6ai6/Snakefile", line 76 in __rule_sort + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 2656 in run_wrapper + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 699 in cached_or_run + File "/usr/lib/python3.13/concurrent/futures/thread.py", line 59 in run + File "/usr/lib/python3.13/concurrent/futures/thread.py", line 93 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xdfdf9b40 (most recent call first): +Thread 0xe4affb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in 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File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xe5dffb40 (most recent call first): +Thread 0xe96fab40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xe67ffb40 (most recent call first): +Thread 0xe68ffb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xe7bffb40 (most recent call first): +Thread 0xe7cffb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", 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_bootstrap -Thread 0xeb3f8b40 (most recent call first): +Thread 0xea6fcb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xec5fbb40 (most recent call first): +Thread 0xeaefdb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xecdfcb40 (most recent call first): +Thread 0xed0fab40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xeddfeb40 (most recent call first): +Thread 0xed8fbb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xee5ffb40 (most recent call first): +Thread 0xee8fdb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xef7ffb40 (most recent call first): +Thread 0xf0affb40 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 992 in run File "/usr/lib/python3.13/threading.py", line 1041 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1012 in _bootstrap -Thread 0xf7f11700 (most recent call first): - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/utils.py", line 425 in format - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/jobs.py", line 1009 in format_wildcards - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/jobs.py", line 542 in shellcmd - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/persistence.py", line 271 in finished - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/jobs.py", line 1193 in postprocess - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/jobs.py", line 1519 in postprocess - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 293 in handle_job_success - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/executors/__init__.py", line 730 in handle_job_success - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/scheduler.py", line 650 in _finish_jobs - File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/scheduler.py", line 550 in schedule +Thread 0xf7bae700 (most recent call first): + File "/usr/lib/python3.13/threading.py", line 359 in wait + File "/usr/lib/python3.13/threading.py", line 511 in acquire + File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/scheduler.py", line 546 in schedule File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/workflow.py", line 1242 in execute File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/snakemake/__init__.py", line 792 in snakemake File "/build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/tests/common.py", line 234 in run @@ -3621,10 +3668,10 @@ warnings.warn( tests/tests.py::test_glpk_solver - :890: DeprecationWarning: This process (pid=42202) is multi-threaded, use of fork() may lead to deadlocks in the child. + :890: DeprecationWarning: This process (pid=71244) is multi-threaded, use of fork() may lead to deadlocks in the child. -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -= 249 passed, 46 skipped, 99 deselected, 1 xfailed, 21 warnings in 1299.84s (0:21:39) = += 249 passed, 46 skipped, 99 deselected, 1 xfailed, 21 warnings in 1221.61s (0:20:21) = I: pybuild pybuild:334: rm -fr /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/bin /build/reproducible-path/snakemake-7.32.4/.pybuild/cpython3_3.13_snakemake/build/tests make[1]: Leaving directory '/build/reproducible-path/snakemake-7.32.4' create-stamp debian/debhelper-build-stamp @@ -3665,12 +3712,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26370/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/48130 and its subdirectories -I: Current time: Thu Feb 13 21:14:03 -12 2025 -I: pbuilder-time-stamp: 1739524443 +I: removing directory /srv/workspace/pbuilder/26370 and its subdirectories +I: Current time: Fri Mar 20 06:01:10 +14 2026 +I: pbuilder-time-stamp: 1773936070