Diff of the two buildlogs: -- --- b1/build.log 2025-03-08 11:15:19.557912648 +0000 +++ b2/build.log 2025-03-08 11:18:31.861265499 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 7 23:07:09 -12 2025 -I: pbuilder-time-stamp: 1741432029 +I: Current time: Sat Apr 11 07:38:20 +14 2026 +I: pbuilder-time-stamp: 1775842700 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying ignore_flaky_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3881528/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 10 17:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='338d31797cdd49d093bbbd6f748c9b85' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3881528' - PS1='# ' - PS2='> ' + INVOCATION_ID=f961029d4b804fcda3d658412e28614a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1555386 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vA8QThHO/pbuilderrc_1kZZ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vA8QThHO/b1 --logfile b1/build.log barclay_5.0.0+dfsg-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vA8QThHO/pbuilderrc_rzKM --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vA8QThHO/b2 --logfile b2/build.log barclay_5.0.0+dfsg-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3881528/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -389,7 +421,7 @@ Get: 255 http://deb.debian.org/debian unstable/main amd64 libjacoco-java all 0.8.12-1 [647 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libjoptsimple-java all 5.0.4-7 [73.7 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libmockito-java all 3.3.0-2 [510 kB] -Fetched 271 MB in 23s (11.7 MB/s) +Fetched 271 MB in 7s (36.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) @@ -1231,8 +1263,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Mar 8 11:11:58 UTC 2025. -Universal Time is now: Sat Mar 8 11:11:58 UTC 2025. +Local time is now: Fri Apr 10 17:39:35 UTC 2026. +Universal Time is now: Fri Apr 10 17:39:35 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1648,7 +1680,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/barclay-5.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barclay_5.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/barclay-5.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../barclay_5.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package barclay dpkg-buildpackage: info: source version 5.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1671,7 +1707,7 @@ jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* Duplicate specification "unlink|u" for option "u" -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper debian/rules override_dh_clean @@ -1705,15 +1741,15 @@ dh_auto_configure make[1]: Leaving directory '/build/reproducible-path/barclay-5.0.0+dfsg' jh_linkjars -O--buildsystem=gradle -Duplicate specification "u=s" for option "u" -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" +Duplicate specification "unlink|u" for option "u" rm -f debian/libbarclay-java.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/barclay-5.0.0+dfsg' dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=42 jar openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK 64-Bit Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) @@ -1721,18 +1757,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 3.618 secs. -The client will now receive all logging from the daemon (pid: 3987180). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-3987180.out.log +An attempt to start the daemon took 2.986 secs. +The client will now receive all logging from the daemon (pid: 1592222). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-1592222.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 20 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6ec56f82 -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6ec56f82 -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@721cef6f +Using 42 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@57825420 +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@57825420 +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@77614855 Starting Build Compiling initialization script '/build/reproducible-path/barclay-5.0.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@26a58133 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a5dcb28 Compiling initialization script '/build/reproducible-path/barclay-5.0.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle) @@ -1751,15 +1787,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3728e997 +Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@37754d75 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@721cef6f -Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@26b2a790 -Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@29d9ffe5 -:compileJava (Thread[#70,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@77614855 +Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1767dc88 +Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7d2fe017 +:compileJava (Thread[#90,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.011 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@b6e2836 +Putting task artifact state for task ':compileJava' into context took 0.007 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@4ace274e Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1772,22 +1808,22 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Up-to-date check for task ':compileJava' took 3.889 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 3.179 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -/build/reproducible-path/barclay-5.0.0+dfsg/src/main/java/org/broadinstitute/barclay/argparser/ArgumentDefinition.java:40: warning: [this-escape] possible 'this' escape before subclass is fully initialized - this.underlyingFieldClass = getClassForUnderlyingField(); - ^ -/build/reproducible-path/barclay-5.0.0+dfsg/src/main/java/org/broadinstitute/barclay/argparser/PositionalArgumentDefinition.java:43: warning: [this-escape] possible 'this' escape before subclass is fully initialized - intializeCollection("@PositionalArguments"); - ^ /build/reproducible-path/barclay-5.0.0+dfsg/src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java:61: warning: [this-escape] possible 'this' escape before subclass is fully initialized this.defaultValueAsString = convertDefaultValueToString(); ^ /build/reproducible-path/barclay-5.0.0+dfsg/src/main/java/org/broadinstitute/barclay/argparser/NamedArgumentDefinition.java:475: warning: [this-escape] previous possible 'this' escape happens here via invocation final Object initialValue = getArgumentValue(); ^ +/build/reproducible-path/barclay-5.0.0+dfsg/src/main/java/org/broadinstitute/barclay/argparser/ArgumentDefinition.java:40: warning: [this-escape] possible 'this' escape before subclass is fully initialized + this.underlyingFieldClass = getClassForUnderlyingField(); + ^ +/build/reproducible-path/barclay-5.0.0+dfsg/src/main/java/org/broadinstitute/barclay/argparser/PositionalArgumentDefinition.java:43: warning: [this-escape] possible 'this' escape before subclass is fully initialized + intializeCollection("@PositionalArguments"); + ^ /build/reproducible-path/barclay-5.0.0+dfsg/src/main/java/org/broadinstitute/barclay/argparser/ClassFinder.java:44: warning: [deprecation] URL(String,String,String) in URL has been deprecated final URL[] urls = {new URL("file", "", jarPath)}; ^ @@ -1795,32 +1831,32 @@ .map(line -> WordUtils.wrap(line, width)) ^ 6 warnings -:compileJava (Thread[#70,Task worker for ':',5,main]) completed. Took 12.258 secs. -:processResources (Thread[#70,Task worker for ':',5,main]) started. +:compileJava (Thread[#90,Task worker for ':',5,main]) completed. Took 7.511 secs. +:processResources (Thread[#90,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.085 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.028 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#70,Task worker for ':',5,main]) completed. Took 0.259 secs. -:classes (Thread[#70,Task worker for ':',5,main]) started. +:processResources (Thread[#90,Task worker for ':',5,main]) completed. Took 0.119 secs. +:classes (Thread[#90,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#70,Task worker for ':',5,main]) completed. Took 0.001 secs. -:debianMavenPom (Thread[#70,Task worker for ':',5,main]) started. +:classes (Thread[#90,Task worker for ':',5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#90,Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.005 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/barclay-5.0.0+dfsg/build/debian/barclay.pom -:debianMavenPom (Thread[#70,Task worker for ':',5,main]) completed. Took 0.24 secs. -:jar (Thread[#70,Task worker for ':',5,main]) started. +:debianMavenPom (Thread[#90,Task worker for ':',5,main]) completed. Took 0.185 secs. +:jar (Thread[#90,Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.028 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.018 secs. It is not up-to-date because: No history is available. -:jar (Thread[#70,Task worker for ':',5,main]) completed. Took 0.182 secs. +:jar (Thread[#90,Task worker for ':',5,main]) completed. Took 0.287 secs. -BUILD SUCCESSFUL in 31s +BUILD SUCCESSFUL in 23s 4 actionable tasks: 4 executed make[1]: Leaving directory '/build/reproducible-path/barclay-5.0.0+dfsg' jh_build -O--buildsystem=gradle @@ -1832,7 +1868,7 @@ LC_ALL=C.UTF-8 dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=20 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=42 test openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK 64-Bit Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) @@ -1840,17 +1876,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 3.135 secs. -The client will now receive all logging from the daemon (pid: 3993860). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-3993860.out.log +An attempt to start the daemon took 3.179 secs. +The client will now receive all logging from the daemon (pid: 1598499). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-1598499.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 20 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1df7113f -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1df7113f -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4ce1a324 +Using 42 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@29b207dd +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@29b207dd +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@76f2156c Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@56c01a6e +Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1dea20ef Settings evaluated using settings file '/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-5.0.0+dfsg' @@ -1866,15 +1902,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@526c545e +Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1592b372 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4ce1a324 -Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6dff442 -Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1be75cb8 -:compileJava (Thread[#70,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@76f2156c +Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@10cf42c2 +Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f15c344 +:compileJava (Thread[#90,Task worker for ':' Thread 2,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.024 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ffd8002 +Putting task artifact state for task ':compileJava' into context took 0.011 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@2760ab66 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1887,21 +1923,21 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Skipping task ':compileJava' as it is up-to-date (took 1.992 secs). +Skipping task ':compileJava' as it is up-to-date (took 0.883 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#70,Task worker for ':',5,main]) completed. Took 2.224 secs. -:processResources (Thread[#88,Task worker for ':' Thread 19,5,main]) started. +:compileJava (Thread[#90,Task worker for ':' Thread 2,5,main]) completed. Took 1.016 secs. +:processResources (Thread[#96,Task worker for ':' Thread 8,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.015 secs). +Skipping task ':processResources' as it is up-to-date (took 0.02 secs). :processResources UP-TO-DATE -:processResources (Thread[#88,Task worker for ':' Thread 19,5,main]) completed. Took 0.022 secs. -:classes (Thread[#88,Task worker for ':' Thread 19,5,main]) started. +:processResources (Thread[#96,Task worker for ':' Thread 8,5,main]) completed. Took 0.033 secs. +:classes (Thread[#96,Task worker for ':' Thread 8,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#88,Task worker for ':' Thread 19,5,main]) completed. Took 0.001 secs. -:compileTestJava (Thread[#88,Task worker for ':' Thread 19,5,main]) started. +:classes (Thread[#96,Task worker for ':' Thread 8,5,main]) completed. Took 0.004 secs. +:compileTestJava (Thread[#96,Task worker for ':' Thread 8,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Replacing commons-io:commons-io:jar:2.11.0 -> commons-io:commons-io:jar:debian @@ -1917,63 +1953,63 @@ Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian -Up-to-date check for task ':compileTestJava' took 7.783 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 2.953 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[#88,Task worker for ':' Thread 19,5,main]) completed. Took 16.0 secs. -:processTestResources (Thread[#88,Task worker for ':' Thread 19,5,main]) started. +:compileTestJava (Thread[#96,Task worker for ':' Thread 8,5,main]) completed. Took 7.683 secs. +:processTestResources (Thread[#96,Task worker for ':' Thread 8,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.164 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.094 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[#88,Task worker for ':' Thread 19,5,main]) completed. Took 0.306 secs. -:testClasses (Thread[#88,Task worker for ':' Thread 19,5,main]) started. +:processTestResources (Thread[#96,Task worker for ':' Thread 8,5,main]) completed. Took 0.269 secs. +:testClasses (Thread[#96,Task worker for ':' Thread 8,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#88,Task worker for ':' Thread 19,5,main]) completed. Took 0.0 secs. -:test (Thread[#88,Task worker for ':' Thread 19,5,main]) started. +:testClasses (Thread[#96,Task worker for ':' Thread 8,5,main]) completed. Took 0.0 secs. +:test (Thread[#96,Task worker for ':' Thread 8,5,main]) started. :test -Putting task artifact state for task ':test' into context took 0.004 secs. -Up-to-date check for task ':test' took 1.04 secs. It is not up-to-date because: +Putting task artifact state for task ':test' into context took 0.008 secs. +Up-to-date check for task ':test' took 1.144 secs. It is not up-to-date because: Task.upToDateWhen is false. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath6525103415796773706txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath834610716253658386txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. -Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5de76f88, [], /tmp/enabledExpansion2034289838973573356.args, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@63a9ada9, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@6258f3a3, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion13867233965547120577.args, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@72e461c6, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@36132827, [], /tmp/enabledExpansion11937114636038750799.list, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@273171c4, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5c20c4bc, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion6052195804819817688.list, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@419be1b8, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@3f4d73d6, [], /tmp/enabledExpansion12304540067585783066.args, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@17116fa7, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@67084bcf, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion513070969804530353.args, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@1fe7a0e3, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@75d6807c, [], /tmp/enabledExpansion2620427620200333195.list, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@1c190513, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@42c333b2, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion10230045435691228318.list, [Ljava.lang.String;@329ab7a7, [Ljava.lang.String;@1e32b228, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@2aa739d7, [], [Ljava.lang.String;@75d9fdbf, [Ljava.lang.String;@5e596194, [Ljava.lang.String;@3c0ac4b7, [Ljava.lang.String;@2f703b60)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@765dcfdd, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@75d9fdbf, [Ljava.lang.String;@5e596194, [Ljava.lang.String;@5c6c7a12, [Ljava.lang.String;@7a2476e1)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@7151e03e, [], /tmp/enabledExpansion9062583074605305541.args, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@64ed5129, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@f3d7eff, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion14168467749931688279.args, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@7f445a7f, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@4161b64e, [], /tmp/enabledExpansion7646372576209313148.list, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@4cf5b30e, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@13187312, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion6601162378558453358.list, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@67662221, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@3cf9ed20, [], /tmp/enabledExpansion10627779237140327125.args, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@7f374c23, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@4fc83184, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion6483718563926754545.args, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@67cd5a37, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@6a9fe3dd, [], /tmp/enabledExpansion2346870053864341511.list, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@527358fa, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@430adec9, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion3647023939885824528.list, [Ljava.lang.String;@492e746d, [Ljava.lang.String;@5959844, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@2cc2d63f, [], [Ljava.lang.String;@3679a294, [Ljava.lang.String;@720bb5dc, [Ljava.lang.String;@681f9247, [Ljava.lang.String;@5256d255)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5dfaaf63, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@3679a294, [Ljava.lang.String;@720bb5dc, [Ljava.lang.String;@248a3fdf, [Ljava.lang.String;@62295bd1)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testGetCommandLineWithExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@491d67ba, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@491d67ba, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@2f8f4ccc, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@2f8f4ccc, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@366fd82a, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@366fd82a, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@72202341, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@3a3699d5, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@9d10a4e, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@9d10a4e, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@8380f2a, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@8380f2a, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@153ddfa7, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@153ddfa7, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@24c23938, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@6be4b699, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testPositionalCollectionFromExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testRejectNonCollectionFileExpansionSuppression(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@791ed7ea, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@791ed7ea, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@4dde2e50, [Ljava.lang.String;@4269ea19)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@256e714d, [Ljava.lang.String;@6fc73ed6)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@70dd6cbf, [Ljava.lang.String;@61950ce2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@6e826c1b, [Ljava.lang.String;@6cd190ec)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@68de032, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@68de032, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@8c9da9a, [Ljava.lang.String;@7a1edc7d)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@465b1402, [Ljava.lang.String;@1de38e20)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@2e6794a3, [Ljava.lang.String;@5cef49a1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@76780a78, [Ljava.lang.String;@26a5f3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAbbreviationsAreRejected(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAdvancedArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgCollectionNotInitialized(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@3dcb15bb, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@6e29bb73, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@4b9b94c5, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@7baab628, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@6cad7abb, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@77580775, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentCollection(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentUseClash(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -1992,11 +2028,11 @@ Running Test: Test method testEnumSet(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testEnumSetNegative(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@77a5da6d, [Ljava.lang.String;@68ba543c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@3e35cda5, [Ljava.lang.String;@769181ba)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@3f0b81f2, [Ljava.lang.String;@690cd3be)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@183a9721, [Ljava.lang.String;@29441980)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@324920cd, [Ljava.lang.String;@20ea7fcb)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@499ad5c8, [Ljava.lang.String;@394a8746)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@7c646c4a, [Ljava.lang.String;@1a2e77e4)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@ef076ac, [Ljava.lang.String;@7320eb2e)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@4413751f, [Ljava.lang.String;@2b8cee37)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@139c1fb0, [Ljava.lang.String;@34b7e772)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagNoArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagWithPositionalFollowing(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagsWithArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2109,13 +2145,13 @@ Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOnlyPrintNameOnce(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOptionalOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@4754f0f3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@46ee3ca0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@70caadb1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@77168948)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@7387250b)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@39472e28)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@7fc62dd7)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@5c92ab5c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@5766c9ac)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@344e744a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@47c0a1ff)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@3dc36065)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@2fbbde6f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@f44cbad)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositionalDeprecated(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPrivateArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2123,9 +2159,9 @@ Running Test: Test method testRequiredOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@58bf2ce)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@6f644ae3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@631e0c49)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@7e04dd38)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@5ea902ab)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@1e23b2f3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2136,19 +2172,19 @@ Version:null Running Test: Test method testWithBoundariesArgumentsForNoNumeric(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithDoubleBoundariesArgumentsForInteger(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@40446c4f, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@17378baa, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@3452491c, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@54db88a, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@753f7050, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@30a92bea, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@4ccaaff9, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@589f4705, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@4d7acfd5, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@471eb9d0, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@510c9eb9, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@74ecb6ea, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@28d7a933, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@55d621b9, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@3a325772, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@763d5110, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@2205d0ad, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@70e75af, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@49293c19, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) -Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@6fa72332, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@1d18c7f1, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@217aa5a8, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[1](TestPluginWithOptionalArg, optionalStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDefaultIncludePluginClass[0](class org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest$TestPluginBase, true)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) @@ -2628,401 +2664,401 @@ Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@2c6e87f4, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@796ed7b9, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@4bb2435, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false) STANDARD_ERROR ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@4bb2435, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@1ff564e0, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false) STANDARD_ERROR ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@737ddc52, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@22a98064, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y +Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@2b248179, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@6c6a5190, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@2b248179, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N +Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@4e766a06, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@5f4243b9, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNonASCIIAccept(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) @@ -3813,6 +3849,7 @@ SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. +Gradle Test Executor 1 finished executing tests. times. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: @@ -4177,131 +4214,131 @@ Running Test: Test method testUsageWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositionalWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@4c5289c9, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@7501bea7, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@66d2d997, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1b6717e6, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@5f8e1f75, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@44ebf824, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@47566918, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@3b487cb5, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@42958e87, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@5607fb92, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@774742d4, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@24244111, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@64cb0f2d, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@2956af8e, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@21816b2f, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@2100da7d, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@44650016, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@6f6ffab4, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@531693e2, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@53a0bf35, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@71994620, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@36b0ba1b, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@218cf441, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@dbe13e2, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@2960b054, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@2b5e114, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@227497c, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1e0f360a, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@45267743, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@6fcde589, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@71d46d7e, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@50ee4a03, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@71bb8b04, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@7b613047, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@400315e5, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@56133e2, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@2b6b372e, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@41b0635e, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@5ff60539, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@3f0f588a, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@6d1757d2, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@30744d48, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1740763, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@3ac1d3c7, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1e3dcfe5, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@6c710f0b, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@3f70ae0c, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@568bea46, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@333b48b1, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@3d183d97, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@51b1a78d, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@33d3b5cf, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@33e95dea, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@4a2f7ac4, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@20a0c7a3, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@e1754d1, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@f6f5915, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@7b70a67f, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@70d41fb, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@18308344, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@7f40a598, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@696407bb, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@78538d59, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@5077f2dd, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@1ae60d80, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@579176c2, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@58dd8a9f, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@402da686, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@6e6d4292, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@68018f65, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@33e2e469, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@3a62c75b, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@531b7b6e, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@41277c14, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@4ed423ea, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@61c6226f, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@1ca950a1, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@56e2e7ac, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElementsGreaterThanMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testNonCollection(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method recognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method unrecognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) -Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@1e3c525e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@6ca08c6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@570c3736)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@2f308560)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@299bf8fc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@37812e54)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@18271d86)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@3753d1c7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@1314d316)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@c409876)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@31cb9f9d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@4b7fd677)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@785a5dc3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@754c5ddf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@4abb053a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@326ae30b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@6f45f501)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@50514e0b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@40837623)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@1b37169d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@33b56a41)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@30b473ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@21c6e078)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@13e59e6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@65350a1b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@378a2143)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@3e896839)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@59ec8ae7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@51013121)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@2c0c814)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@1c039144)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@126fb1bc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@46681be4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@3c445f31)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@6afe0eb9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@d4abd6a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@6027a403)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@14684d79)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@2db4154a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@32a78563)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@4b99f65f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@1ae49f83)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@4cbd9563)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@2d2ec59a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@7005eed3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@407d9423)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@2463c8dc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@29fcfdd8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@2e3a8648)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@7405e02f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@5ba74869)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@648d9f0e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@32c9a396)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@15ebc0c3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@74a5d53c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@1690c835)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@6c10fab3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@192691ed)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@9aa7335)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@5070e4fd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@3f9d067b, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@ec690f5, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@e2cdf5e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11b5a83a, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11552683)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@6bf84ebb, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@59318a2a, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3f945dd3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@41d72a9e, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@55da7df9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@27da6451)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@5bdc644a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4e6d10d5, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@62d6bbfe)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@1b17dccf, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3dcd8850, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3dbe9f28)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@3670421a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3669ece1, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@8d45dc8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@427039a5, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1ad46b21, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1ade4f10)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@e6ea375, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5c18c0f9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7846a4fe)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@7f816b46, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@65828199, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@56796764)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@51b13460, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7146fdd0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@53c496d5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@9e05e8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5b6ab0d0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@73b01dc3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@5c276fa5, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7238ed44, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2f4b0aeb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@5adab865, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6fb3cdeb, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@35f0028)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@791a1603, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7c2b1dd0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@51d7ced7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@28de45b8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3a009b20, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@421ac3e3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@56f201d5, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@9bced36, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3b060870)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@4162b55a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@63443749, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2d5e2584)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@3d7f0d6d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@28bb8bb4, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@14fe00f6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@19077ff1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@20eb53db)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@1bc7e8da)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@c21adff)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@36f7c8ad)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@167e2548)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@1f8f36a2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@6673d9de)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@3e163b3a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@49f53adf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@123b7767)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@1c1a11c5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@61c39ffb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@1b74019b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@1ceb146b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@15821dd8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@6309d93e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@4548ce35)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@61e67de2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@298fe4b8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@6ba4dff0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@3a1fd76f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@33d06aa7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@1860362)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@7c36f416)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@388962bb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@2651d818)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@7352adb7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@5655c934)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@5c809db5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@38eb7f97)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@22393680)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@7984cfc1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@449bdfde)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@ecb059c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@266be42e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@61acb6e4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@72c11f1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@24f563e5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@531de883)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@1f430fa8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@2a304d98)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@13bc6409)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@5624684b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@40f64258)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@2995b6f2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@52669ad5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@3a3e4238)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@26355af9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@389d0c05)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@4d4478bd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@80e7ccd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@496643ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@77640d93)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@527119b2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@6c0953d9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@47c7fa0a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@66007d3d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@53160e32)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@1b03bf32)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@5efe1ae9, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@29fc9f14, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@5fd851fe, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@19a25aa, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@70c28e62)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@3fe69e9d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@64f53ea0, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@27a1715)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@4ca4b7a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7ba674fe, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4ec09e8f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@1e341b18, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7778709b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@46d00a8b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@223acbed, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@8a69e64, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5d008672)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@5f1e7625, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@789dc5ee, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7e350f61)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@7e265a39, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@7eadaa80, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ce40b5a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@378726c3, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@12bc89bf, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@66fdee9a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@616f3627, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1988380b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@53a339e0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@5cd2275c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@268802f2, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@736fe56a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@17b0989a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@37bc1f30, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@791008b4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@20a661e8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2117c73c, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1deecd1b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@1f7ab7ee, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@a7e40b6, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@543b7468)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@118edcc7, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@9bb7282, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11dc42a6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@20511293, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4c1ecb9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@62b0558)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@4565196c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@76fbcb84, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@10cc2db)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@279d11b9, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5b420de9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@77a36368)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@22011960, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@77c4d54, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@43ecfbae)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTagCollectionArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTaggedExpansionFile(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testTaggedScalarArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) @@ -4389,16 +4426,15 @@ e f g, -1000)(org.broadinstitute.barclay.utils.UtilsUnitTest) -Gradle Test Executor 1 finished executing tests. Results: SUCCESS (337 tests, 337 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.122 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/test-results/test +Finished generating test XML results (0.09 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.198 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/reports/tests/test -:test (Thread[#88,Task worker for ':' Thread 19,5,main]) completed. Took 11.257 secs. +Finished generating test html results (0.097 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/reports/tests/test +:test (Thread[#96,Task worker for ':' Thread 8,5,main]) completed. Took 7.595 secs. -BUILD SUCCESSFUL in 49s +BUILD SUCCESSFUL in 28s 5 actionable tasks: 3 executed, 2 up-to-date - rm -fr -- /tmp/dh-xdg-rundir-JAlzXad3 + rm -fr -- /tmp/dh-xdg-rundir-lgV_QaGx make[1]: Leaving directory '/build/reproducible-path/barclay-5.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4409,7 +4445,7 @@ install -m0755 -d /build/reproducible-path/barclay-5.0.0\+dfsg/debian/libbarclay-java jh_installjavadoc -O--buildsystem=gradle Duplicate specification "author|A=s" for option "A" -Duplicate specification "author|A=s" for option "A" +Duplicate specification "A" for option "A" dh_installdocs -O--buildsystem=gradle install -m0755 -d debian/libbarclay-java/usr/share/doc/libbarclay-java install -p -m0644 debian/copyright debian/libbarclay-java/usr/share/doc/libbarclay-java/copyright @@ -4432,7 +4468,7 @@ Reading manifest from /build/reproducible-path/barclay-5.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar Updating manifest in /build/reproducible-path/barclay-5.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar jh_manifest -O--buildsystem=gradle -Duplicate specification "version|V" for option "V" +Duplicate specification "V:s" for option "V" Duplicate specification "version|V" for option "V" find debian/libbarclay-java -name '*.jar' Found symlink usr/share/java/barclay.jar @@ -4466,10 +4502,10 @@ rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar dh_link -plibbarclay-java /usr/share/javabarclay.jar usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar - rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar - ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-5.0.0.jar debian/libbarclay-java/usr/share/java/barclay.jar + rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar + ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar install -m0755 -d debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar @@ -4523,12 +4559,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1555386/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3881528 and its subdirectories -I: Current time: Fri Mar 7 23:15:18 -12 2025 -I: pbuilder-time-stamp: 1741432518 +I: removing directory /srv/workspace/pbuilder/1555386 and its subdirectories +I: Current time: Sat Apr 11 07:41:29 +14 2026 +I: pbuilder-time-stamp: 1775842889