Diff of the two buildlogs: -- --- b1/build.log 2025-07-18 16:53:41.661100558 +0000 +++ b2/build.log 2025-07-18 16:56:30.977317306 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Aug 20 11:14:19 -12 2026 -I: pbuilder-time-stamp: 1787267659 +I: Current time: Sat Jul 19 06:53:43 +14 2025 +I: pbuilder-time-stamp: 1752857623 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,51 +29,83 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1580689/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 18 16:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='90df559d0f1841b095fe1aa94e2b57fb' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1580689' - PS1='# ' - PS2='> ' + INVOCATION_ID=d015ea57c61c45eabcd0d892c1f871e4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=313980 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lxlK66Tw/pbuilderrc_DpKq --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lxlK66Tw/b1 --logfile b1/build.log bitseq_0.7.5+dfsg-7.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lxlK66Tw/pbuilderrc_9yLm --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lxlK66Tw/b2 --logfile b2/build.log bitseq_0.7.5+dfsg-7.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.32+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.32-1~bpo12+1 (2025-06-21) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1580689/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -175,7 +207,7 @@ Get: 52 http://deb.debian.org/debian unstable/main amd64 libbam-dev amd64 0.1.19+dfsg-6 [118 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] -Fetched 38.3 MB in 2s (20.6 MB/s) +Fetched 38.3 MB in 2s (18.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) @@ -365,8 +397,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Aug 20 23:16:04 UTC 2026. -Universal Time is now: Thu Aug 20 23:16:04 UTC 2026. +Local time is now: Fri Jul 18 16:55:45 UTC 2025. +Universal Time is now: Fri Jul 18 16:55:45 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -420,7 +452,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bitseq-0.7.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bitseq_0.7.5+dfsg-7_source.changes +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bitseq-0.7.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bitseq_0.7.5+dfsg-7_source.changes dpkg-buildpackage: info: source package bitseq dpkg-buildpackage: info: source version 0.7.5+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -430,7 +466,7 @@ debian/rules clean dh clean dh_auto_clean - make -j16 clean + make -j12 clean make[1]: Entering directory '/build/reproducible-path/bitseq-0.7.5+dfsg' rm -f *.o convertSamples estimateDE estimateExpression estimateHyperPar estimateVBExpression extractSamples getFoldChange getGeneExpression getPPLR getVariance getWithinGeneExpression parseAlignment transposeLargeFile make[1]: Leaving directory '/build/reproducible-path/bitseq-0.7.5+dfsg' @@ -441,7 +477,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j16 "INSTALL=install --strip-program=true" + make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bitseq-0.7.5+dfsg' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -ffunction-sections -fdata-sections -c ArgumentParser.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o common.o common.cpp @@ -481,20 +517,24 @@ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getPPLR.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getPPLR g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getVariance.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getVariance g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getWithinGeneExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o TranscriptInfo.o -o getWithinGeneExpression -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections transposeLargeFile.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o transposeFiles.o -o transposeLargeFile -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -fopenmp -DSUPPORT_OPENMP -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections -pthread parseAlignment.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o ReadDistribution.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o -lbam -lz -o parseAlignment -transposeLargeFile.cpp:11:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 11 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ -transposeLargeFile.cpp:11:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 11 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ extractSamples.cpp:47:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 47 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ extractSamples.cpp:47:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 47 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ +convertSamples.cpp:51:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 51 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ +convertSamples.cpp:51:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 51 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ +getPPLR.cpp:29:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 29 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ +getPPLR.cpp:29:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 29 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ getFoldChange.cpp:28:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 28 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ @@ -507,23 +547,11 @@ getGeneExpression.cpp:33:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 33 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ -convertSamples.cpp:51:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 51 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ -convertSamples.cpp:51:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 51 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ -getWithinGeneExpression.cpp:54:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ -getWithinGeneExpression.cpp:54:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ -getPPLR.cpp:29:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 29 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); +estimateHyperPar.cpp:62:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ -getPPLR.cpp:29:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 29 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); +estimateHyperPar.cpp:62:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateVBExpression.cpp:126:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 126 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); @@ -531,11 +559,17 @@ estimateVBExpression.cpp:126:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 126 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ -parseAlignment.cpp:102:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); +estimateDE.cpp:57:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ -parseAlignment.cpp:102:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); +estimateDE.cpp:57:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ +getWithinGeneExpression.cpp:54:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ +getWithinGeneExpression.cpp:54:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ getVariance.cpp:28:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 28 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); @@ -543,23 +577,25 @@ getVariance.cpp:28:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 28 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ -estimateDE.cpp:57:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ -estimateDE.cpp:57:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); - | ^~~~~~~~ estimateExpression.cpp:532:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 532 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateExpression.cpp:532:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 532 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ -estimateHyperPar.cpp:62:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); +g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections transposeLargeFile.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o transposeFiles.o -o transposeLargeFile +transposeLargeFile.cpp:11:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 11 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ -estimateHyperPar.cpp:62:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); +transposeLargeFile.cpp:11:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 11 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bitseq-0.7.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -fopenmp -DSUPPORT_OPENMP -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections -pthread parseAlignment.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o ReadDistribution.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o -lbam -lz -o parseAlignment +parseAlignment.cpp:102:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); + | ^~~~~~~~ +parseAlignment.cpp:102:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/bitseq-0.7.5+dfsg' dh_auto_test @@ -645,8 +681,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'bitseq-dbgsym' in '../bitseq-dbgsym_0.7.5+dfsg-7_amd64.deb'. dpkg-deb: building package 'bitseq' in '../bitseq_0.7.5+dfsg-7_amd64.deb'. +dpkg-deb: building package 'bitseq-dbgsym' in '../bitseq-dbgsym_0.7.5+dfsg-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../bitseq_0.7.5+dfsg-7_amd64.buildinfo dpkg-genchanges --build=binary -O../bitseq_0.7.5+dfsg-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -654,12 +690,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/313980/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1580689 and its subdirectories -I: Current time: Thu Aug 20 11:16:40 -12 2026 -I: pbuilder-time-stamp: 1787267800 +I: removing directory /srv/workspace/pbuilder/313980 and its subdirectories +I: Current time: Sat Jul 19 06:56:29 +14 2025 +I: pbuilder-time-stamp: 1752857789