Diff of the two buildlogs: -- --- b1/build.log 2025-03-10 22:54:00.344590105 +0000 +++ b2/build.log 2025-03-10 23:45:13.790092326 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 12 17:13:44 -12 2026 -I: pbuilder-time-stamp: 1776057224 +I: Current time: Tue Mar 11 12:54:03 +14 2025 +I: pbuilder-time-stamp: 1741647243 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying fix_missing_cstring_riscv64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 10 22:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='59c8965be22f436d8ef9a7f48483df9a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1134213' - PS1='# ' - PS2='> ' + INVOCATION_ID=da77e844034a4635850c04354c547d46 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=953146 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_oPKV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1 --logfile b1/build.log diamond-aligner_2.1.11-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_TOfg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2 --logfile b2/build.log diamond-aligner_2.1.11-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -173,7 +205,7 @@ Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 41.6 MB in 4s (9616 kB/s) +Fetched 41.6 MB in 5s (7899 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) @@ -432,7 +464,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable @@ -491,8 +527,8 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (1.6s) --- Generating done (0.0s) +-- Configuring done (15.0s) +-- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: @@ -508,84 +544,84 @@ -- Build files have been written to: /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.11 -B/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend -make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/depend -make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' +make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/depend cd /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' +make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/depend cd /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles/arch_sse4_1.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' +make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/build +make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/build -make -f CMakeFiles/arch_generic.dir/build.make 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-[ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o -[ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -[ 5%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o -[ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -[ 5%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -[ 6%] Building CXX object CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o +[ 2%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o +[ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o +[ 3%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o +[ 1%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/banded_3frame_swipe.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/search/stage1_2.cpp -[ 6%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/score_profile.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/tools/benchmark.cpp -[ 6%] 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/anchored_wrapper.cpp +[ 12%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/score_profile.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/ungapped_simd.cpp +[ 14%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/anchored_wrapper.cpp +[ 14%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, @@ -636,11 +672,12 @@ /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ +In file included from /usr/include/c++/14/list:62, + from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: + inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ @@ -648,16 +685,15 @@ inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ -In file included from /usr/include/c++/14/list:62, - from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: + inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ @@ -727,87 +763,101 @@ make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' -[ 16%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o +[ 15%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/extend.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/extend.cpp -In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/output/output.h:28, - from /build/reproducible-path/diamond-aligner-2.1.11/src/basic/hssp.cpp:23: -/build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h: In constructor ‘Hsp::Hsp(const ApproxHsp&, Loc, Loc)’: 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-D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/output/daa/merge.cpp [ 96%] Building CXX object CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o -MF CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o.d -o CMakeFiles/diamond.dir/src/chaining/backtrace.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/chaining/backtrace.cpp -[ 96%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/output/daa/merge.cpp [ 96%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o -MF CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o.d -o CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/util/tsv/merge.cpp [ 97%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/join.cpp.o @@ -1120,2921 +1156,2921 @@ make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' -cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls -+ mktemp -d -+ TESTDIR=/tmp/tmp.72ZJtdlCl4 -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive +cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls +++ mktemp -d ++ TESTDIR=/tmp/tmp.A8efFsAV1o ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.011s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.01s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.001s] +Masking queries... [0.099s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.164s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.002s] -Initializing temporary storage... [0.226s] -Building reference histograms... [0.009s] +Masking reference... [0.061s] +Initializing temporary storage... [0.004s] +Building reference histograms... [0.109s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.052s] +Building query seed array... [0.033s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.067s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.046s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.035s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.045s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.088s] +Building query seed array... [0.061s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.05s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.065s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.083s] +Building query seed array... [0.042s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.045s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.029s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.065s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.051s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.046s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.053s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.074s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.059s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.037s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.048s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.051s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.051s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.051s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.067s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.037s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.043s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.038s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.033s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.029s] +Computing hash join... [0.058s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.04s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.048s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.042s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.044s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.037s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.055s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.05s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.047s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.041s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.041s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.027s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.05s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.047s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.042s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.053s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.055s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.035s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.045s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.187s] +Computing alignments... [1.948s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] -Loading query sequences... [0s] +Deallocating queries... [0.001s] +Loading query sequences... [0.001s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.961s +Total time = 13.772s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.014s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.019s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.011s] +Masking queries... [0.089s] Algorithm: Double-indexed -Building query histograms... [0.009s] +Building query histograms... [0.156s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.069s] -Building reference histograms... [0.01s] +Masking reference... [0.046s] +Initializing temporary storage... [0.007s] +Building reference histograms... [0.143s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.051s] +Building query seed array... [0.051s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.069s] +Building query seed array... [0.067s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.048s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.083s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.057s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.047s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.055s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.054s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.053s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.029s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.067s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.05s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.055s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.054s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.053s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.045s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.03s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.046s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.057s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.041s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.047s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.08s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.057s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.055s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.056s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.039s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.03s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.029s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.048s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.051s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.043s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.054s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.074s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.04s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.046s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.022s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.044s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.044s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.039s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.056s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.031s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.025s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.025s] +Computing hash join... [0.067s] +Masking low complexity seeds... [0.051s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.065s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.099s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.061s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.049s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.075s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.073s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.04s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.082s] +Computing hash join... [0.083s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.021s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.121s] +Computing alignments... [0.386s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.006s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.007s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.772s +Total time = 12.689s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.008s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.041s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.239s] Seeking in database... [0s] -Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0s] -Building reference histograms... [0.009s] +Loading reference sequences... [0.001s] +Masking reference... [0.047s] +Initializing temporary storage... [0.01s] +Building reference histograms... [0.149s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] -Deallocating memory... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.046s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.051s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.079s] +Building query seed array... [0.067s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.066s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.083s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.095s] +Building query seed array... [0.041s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.054s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.026s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.078s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.098s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.041s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.055s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.04s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.05s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.074s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.047s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.067s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.05s] +Computing hash join... [0.046s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.055s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.034s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.046s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.036s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.046s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.062s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.052s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.078s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.056s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.052s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.052s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.057s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.067s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.032s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.034s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.094s] +Building query seed array... [0.058s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.049s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.046s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.042s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.086s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.039s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.036s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.024s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.053s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.079s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.052s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.048s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.09s] +Building query seed array... [0.068s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.029s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.032s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.035s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.054s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.046s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.052s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.027s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.052s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.049s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.064s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.042s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.045s] +Computing alignments... [1.111s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.007s] Loading query sequences... [0s] -Closing the input file... [0s] +Closing the input file... [0.005s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.607s +Total time = 14.991s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.03s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 -Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Opening the input file... [0.006s] +Opening the output file... [0.003s] +Loading query sequences... [0.011s] +Masking queries... [0.043s] Algorithm: Double-indexed -Building query histograms... [0.009s] -Seeking in database... [0s] +Building query histograms... [0.156s] +Seeking in database... [0.005s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.05s] +Initializing temporary storage... [0.001s] +Building reference histograms... [0.106s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.052s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.053s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.06s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.091s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.07s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.04s] +Computing hash join... [0.045s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.044s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.059s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.059s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.049s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.045s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.042s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.018s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.028s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.032s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.027s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.022s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.05s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.009s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.056s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.046s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.034s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.052s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.052s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.042s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.062s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.065s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.059s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.067s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.076s] +Building query seed array... [0.085s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.097s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.071s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.02s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.029s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.033s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.057s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.048s] +Deallocating memory... [0.007s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.039s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.055s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.045s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.087s] +Computing alignments... [2.248s] Deallocating reference... [0s] Loading reference sequences... [0s] -Deallocating buffers... [0s] +Deallocating buffers... [0.005s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.52s +Total time = 14.838s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.011s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.096s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.045s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.002s] -Initializing temporary storage... [0s] -Building reference histograms... [0.009s] +Masking reference... [0.013s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.097s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.102s] +Building query seed array... [0.048s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.076s] +Building query seed array... [0.096s] +Computing hash join... [0.056s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.071s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.079s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.051s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.031s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.027s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.045s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.03s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.025s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.05s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.028s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.048s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.048s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.05s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.032s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.05s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.05s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.054s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.055s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.037s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.054s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.022s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.026s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.026s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.082s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.038s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.015s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.02s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.098s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.121s] +Building query seed array... [0.06s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.131s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.109s] +Building query seed array... [0.039s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.05s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.075s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.072s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.103s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.055s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.055s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.028s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.101s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.081s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.031s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.089s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.119s] +Searching alignments... [0.019s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.055s] +Computing alignments... [1.454s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.005s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.499s +Total time = 12.862s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.008s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.007s] +Masking queries... [0.042s] Algorithm: Double-indexed -Building query histograms... [0.009s] +Building query histograms... [0.056s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.022s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.11s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.045s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.046s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.036s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.029s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.017s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.021s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.055s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.056s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.059s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.053s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.06s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.049s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.035s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.057s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.037s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.055s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.043s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.021s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.046s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.042s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.016s] +Building query seed array... [0.034s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.033s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.05s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.034s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.025s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.031s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.025s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.025s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.044s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.044s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.038s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.026s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.037s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.051s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.049s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.032s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.026s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.091s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.101s] +Computing alignments... [1.489s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.009s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] @@ -4042,3408 +4078,3408 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.545s +Total time = 11.206s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.001s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.057s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.036s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.054s] -Building reference histograms... [0.009s] +Masking reference... [0.079s] +Initializing temporary storage... [0.015s] +Building reference histograms... [0.076s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.033s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.052s] +Building query seed array... [0.026s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.034s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.018s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.03s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.041s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.037s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.035s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.053s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.037s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.029s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.028s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.043s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.035s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.009s] +Deallocating memory... [0.009s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.037s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.027s] +Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.109s] +Building query seed array... [0.027s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.049s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.06s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.029s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.021s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.011s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.044s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] +Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.03s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.022s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.023s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.067s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.025s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.053s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.089s] +Building query seed array... [0.055s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.044s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.008s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.092s] +Computing alignments... [0.074s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.011s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.582s +Total time = 10.741s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.011s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Opening the output file... [0.007s] +Loading query sequences... [0.001s] +Masking queries... [0.058s] Algorithm: Double-indexed -Building query histograms... [0.009s] +Building query histograms... [0.124s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] -Initializing temporary storage... [0.158s] -Building reference histograms... [0s] +Masking reference... [0.011s] +Initializing temporary storage... [0.018s] +Building reference histograms... [0.024s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.049s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.063s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.03s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.033s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.046s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.049s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.067s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.061s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.044s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.041s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.049s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.053s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.042s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.037s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.06s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.049s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.019s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.06s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.107s] +Building query seed array... [0.05s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.033s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.013s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.014s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.029s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.018s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.037s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.035s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.01s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.055s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.011s] +Building query seed array... [0.022s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.043s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.013s] +Building query seed array... [0.025s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.019s] +Building query seed array... [0.017s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.012s] +Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.023s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.049s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.037s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.037s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.012s] +Building query seed array... [0.015s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.062s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.064s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.049s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.047s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.084s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.098s] +Building query seed array... [0.055s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.12s] +Building query seed array... [0.084s] +Computing hash join... [0.047s] +Masking low complexity seeds... [0.069s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.019s] +Deallocating memory... [0.008s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.039s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.059s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.057s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.031s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.051s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.031s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.044s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.058s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.041s] +Computing alignments... [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.009s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.704s +Total time = 11.131s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.006s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Opening the output file... [0.003s] +Loading query sequences... [0.006s] +Masking queries... [0.035s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.074s] Seeking in database... [0s] -Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.233s] -Building reference histograms... [0.01s] +Loading reference sequences... [0.001s] +Masking reference... [0.046s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.275s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.069s] +Building query seed array... [0.042s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.074s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.049s] +Building query seed array... [0.063s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.131s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.058s] +Computing hash join... [0.074s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.079s] +Building query seed array... [0.07s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.112s] +Computing hash join... [0.065s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.112s] +Building query seed array... [0.06s] +Computing hash join... [0.054s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.03s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.147s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.089s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.003s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.08s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.026s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.06s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.033s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.055s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.075s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.024s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.034s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.08s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.054s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.048s] +Computing hash join... [0.076s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.055s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.011s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.055s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.029s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.037s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.083s] +Building query seed array... [0.045s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.091s] +Building query seed array... [0.034s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.096s] +Building query seed array... [0.05s] +Computing hash join... [0.061s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.078s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.109s] +Building query seed array... [0.087s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.041s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.079s] +Building query seed array... [0.066s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.056s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.079s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.067s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.081s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.038s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.07s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.033s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.061s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.038s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.062s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.053s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.065s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.048s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.049s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.042s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.052s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.077s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.031s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.044s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.055s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.023s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.122s] +Computing alignments... [3.539s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.01s] Deallocating buffers... [0s] -Deallocating queries... [0s] -Loading query sequences... [0s] -Closing the input file... [0s] -Closing the output file... [0.085s] -Closing the database... [0s] +Deallocating queries... [0.007s] +Loading query sequences... [0.003s] +Closing the input file... [0.003s] +Closing the output file... [0.001s] +Closing the database... [0.006s] Cleaning up... [0s] -Total time = 0.908s +Total time = 18.055s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.001s] +Masking queries... [0.058s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.212s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.072s] -Building reference histograms... [0.005s] +Masking reference... [0.02s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.13s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.056s] +Building query seed array... [0.056s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.037s] +Building query seed array... [0.059s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.046s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.056s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.045s] +Computing hash join... [0.049s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.071s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.053s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.046s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.084s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.086s] +Building query seed array... [0.07s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.061s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.03s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.016s] +Building query seed array... [0.053s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.026s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.038s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.041s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.045s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.054s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.07s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.069s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.047s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.03s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.036s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.051s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.045s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.01s] +Building query seed array... [0.056s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] +Building reference seed array... [0.002s] +Building query seed array... [0.026s] +Computing hash join... [0.006s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0.02s] +Building query seed array... [0.059s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.007s] +Building query seed array... [0.06s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.038s] +Computing hash join... [0.001s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.033s] +Building query seed array... [0.065s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.051s] +Building query seed array... [0.049s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.024s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.019s] +Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.052s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.027s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.023s] +Computing hash join... [0.002s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.006s] +Building query seed array... [0.059s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.012s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.016s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.036s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.055s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.091s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.038s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.049s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.053s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.047s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.045s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.243s] +Computing alignments... [3.418s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0.105s] +Closing the output file... [0.002s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.918s +Total time = 15.039s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.007s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Loading query sequences... [0.006s] +Masking queries... [0.045s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.095s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.179s] -Building reference histograms... [0.01s] +Masking reference... [0.062s] +Initializing temporary storage... [0.013s] +Building reference histograms... [0.114s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.051s] +Building query seed array... [0.057s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.04s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.047s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.053s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.038s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.03s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.025s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.059s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.062s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.051s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.041s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.062s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.057s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.112s] +Building query seed array... [0.067s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.052s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.053s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.064s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.032s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.118s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.049s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.059s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.068s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.059s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.089s] +Building query seed array... [0.029s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.157s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.032s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.038s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.069s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.06s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.05s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.078s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.105s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.047s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.057s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.057s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.041s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.045s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.069s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.08s] +Building query seed array... [0.048s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.086s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.059s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.055s] +Building query seed array... [0.045s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.046s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.069s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.054s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.039s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.041s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.05s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.05s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.064s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.057s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.07s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.041s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.047s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.053s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.055s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.056s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.055s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.088s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.032s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.024s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.124s] +Computing alignments... [2.992s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.012s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.803s +Total time = 17.113s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.02s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.001s] +Masking queries... [0.106s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.163s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.005s] +Masking reference... [0.019s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.121s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.04s] +Building query seed array... [0.03s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.076s] +Building query seed array... [0.071s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.078s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.06s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.052s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.067s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.051s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.063s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.047s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.047s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.048s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.038s] +Computing hash join... [0.045s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.061s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.05s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.067s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.056s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.056s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.056s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.044s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.045s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.039s] +Computing hash join... [0.036s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.068s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.049s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.064s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.057s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.039s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.039s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.096s] +Building query seed array... [0.05s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.052s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.055s] +Computing hash join... [0.045s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.07s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.059s] +Building query seed array... [0.055s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.064s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.066s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.037s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.045s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.046s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.025s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.083s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.039s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.047s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.046s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.057s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.048s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.049s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.038s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.061s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.088s] +Computing hash join... [0.048s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.047s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.035s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.266s] -Deallocating reference... [0s] +Computing alignments... [6.548s] +Deallocating reference... [0.012s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] -Closing the database... [0s] -Cleaning up... [0s] -Total time = 0.746s +Closing the output file... [0.031s] +Closing the database... [0.011s] +Cleaning up... [0.003s] +Total time = 19.805s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 -Opening the input file... [0s] -Opening the output file... [0s] +Opening the input file... [0.003s] +Opening the output file... [0.003s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.032s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.059s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.002s] -Building reference histograms... [0.01s] +Masking reference... [0.065s] +Initializing temporary storage... [0.024s] +Building reference histograms... [0.177s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.058s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.049s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.051s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.057s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.056s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.035s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.083s] +Building query seed array... [0.053s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.045s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.037s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.05s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.041s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.039s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.047s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.075s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.083s] +Building query seed array... [0.022s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.058s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.045s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.057s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.066s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.045s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.065s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.049s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.049s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.046s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.062s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.02s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.007s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.038s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.043s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.095s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.029s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.113s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.067s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.068s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.06s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.062s] +Computing hash join... [0.047s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.045s] +Computing hash join... [0.06s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.089s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.107s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.127s] +Computing hash join... [0.107s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.082s] +Building query seed array... [0.12s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.086s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.077s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.136s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.063s] +Computing hash join... [0.059s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.079s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.032s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.045s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.047s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.063s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.066s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.003s] +Computing alignments... [0.073s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.004s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] @@ -7451,991 +7487,991 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.367s +Total time = 13.08s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.004s] +Masking queries... [0.028s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.02s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] -Initializing temporary storage... [0s] +Initializing temporary storage... [0.001s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.003s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.004s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.025s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.06s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.041s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.059s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.065s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.079s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.046s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.059s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.055s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.053s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.047s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.055s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.045s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.05s] +Computing hash join... [0.044s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.097s] +Building query seed array... [0.067s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.031s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.055s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.055s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.058s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.057s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.042s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.031s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.045s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.045s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.043s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.025s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.049s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.05s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.072s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.048s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.044s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.036s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.044s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.052s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.044s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.041s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.042s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.049s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.037s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.047s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.048s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.061s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.081s] +Computing alignments... [0.094s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.006s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.442s +Total time = 10.995s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Opening the output file... [0.003s] +Loading query sequences... [0.004s] +Masking queries... [0.043s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.084s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.023s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.084s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Building reference seed array... [0.059s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.06s] +Building query seed array... [0.047s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.093s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.056s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.05s] +Building query seed array... [0.048s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.046s] +Building query seed array... [0.056s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.048s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.052s] +Building query seed array... [0.05s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.069s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.033s] +Building query seed array... [0.035s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.022s] +Building query seed array... [0.029s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.069s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.047s] +Building query seed array... [0.037s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.017s] +Building query seed array... [0.02s] +Computing hash join... [0.058s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.08s] +Building query seed array... [0.017s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.054s] +Building query seed array... [0.071s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.061s] +Building query seed array... [0.07s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.054s] +Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.084s] +Building query seed array... [0.083s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.028s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.033s] +Building query seed array... [0.025s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.05s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.007s] +Building query seed array... [0.004s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.019s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.047s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.047s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.019s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.048s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.033s] +Building query seed array... [0.047s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.041s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.035s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.029s] +Building query seed array... [0.066s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.052s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.048s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.084s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.055s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.058s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.096s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.051s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.083s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.042s] +Building query seed array... [0.055s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.028s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.026s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.077s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.053s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.073s] +Building query seed array... [0.063s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.065s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.085s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.042s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.038s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.05s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.082s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.095s] +Computing alignments... [1.65s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.006s] Deallocating buffers... [0s] Deallocating queries... [0s] -Loading query sequences... [0s] -Closing the input file... [0s] +Loading query sequences... [0.004s] +Closing the input file... [0.007s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.603s +Total time = 14.608s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -8443,466 +8479,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.024s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.04s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.005s] +Masking reference... [0.013s] +Initializing temporary storage... [0.008s] +Building reference histograms... [0.068s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.004s] -Deallocating memory... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.036s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.065s] +Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.054s] +Building query seed array... [0.044s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.085s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.046s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.028s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.038s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.024s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.046s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.015s] +Building query seed array... [0.002s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.058s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.038s] +Building query seed array... [0.046s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.036s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.041s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.046s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.037s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.043s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.052s] +Building query seed array... [0.041s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.093s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.051s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.037s] +Building query seed array... [0.05s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.056s] +Building query seed array... [0.033s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.089s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.062s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.08s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.082s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.086s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.11s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.029s] +Building query seed array... [0.093s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.086s] +Building query seed array... [0.068s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.1s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.063s] +Building query seed array... [0.083s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.05s] +Building query seed array... [0.115s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.066s] +Building query seed array... [0.068s] +Computing hash join... [0.054s] +Masking low complexity seeds... [0.054s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] -Deallocating memory... [0s] +Building reference seed array... [0.091s] +Building query seed array... [0.062s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.14s] +Deallocating memory... [0.01s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.075s] +Building query seed array... [0.083s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.067s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.083s] +Building query seed array... [0.027s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.112s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] -Deallocating memory... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.097s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.103s] +Deallocating memory... [0.007s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.071s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.075s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.106s] +Building query seed array... [0.044s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.092s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.048s] +Building query seed array... [0.091s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.075s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.023s] +Building query seed array... [0.028s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.047s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.103s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.071s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.055s] +Building query seed array... [0.032s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.044s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.027s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.029s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.059s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.16s] +Computing alignments... [1.306s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8912,971 +8948,971 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.674s +Total time = 14.791s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.005s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.054s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.025s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.005s] +Masking reference... [0.025s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.076s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.035s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.046s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.035s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.034s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.033s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.052s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.053s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.035s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.061s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.042s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.054s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.03s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.056s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.05s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.055s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.083s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.104s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.042s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.098s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.038s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.042s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.024s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.036s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.042s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.036s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.035s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.038s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.018s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.047s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.018s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.004s] +Computing alignments... [0.088s] Deallocating reference... [0s] Loading reference sequences... [0s] -Deallocating buffers... [0s] +Deallocating buffers... [0.004s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.266s +Total time = 10.864s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0.002s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Opening the output file... [0s] +Loading query sequences... [0.003s] +Masking queries... [0.055s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.077s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0s] +Masking reference... [0.016s] +Initializing temporary storage... [0.01s] +Building reference histograms... [0.06s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.04s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.046s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.044s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.036s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.036s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.047s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.032s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.048s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.06s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.032s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.04s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.035s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.079s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.011s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.046s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.029s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.048s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.048s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.05s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.059s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.059s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.055s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.025s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.029s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.002s] +Computing alignments... [0.067s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9886,17 +9922,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.263s +Total time = 10.164s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -9904,953 +9940,953 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.031s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.037s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.013s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.077s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.044s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.024s] +Building query seed array... [0.03s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.034s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.026s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.032s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.042s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.038s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.038s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.034s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.033s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.038s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.038s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.069s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.032s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.071s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.063s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.074s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.007s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.008s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.024s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.046s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.035s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.034s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.026s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.038s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.042s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.054s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.034s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.055s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.059s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.039s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.092s] +Building query seed array... [0.082s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.05s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.03s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.004s] +Computing alignments... [0.064s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.004s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.261s +Total time = 10.485s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] +Opening the output file... [0.006s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.026s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.056s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] -Initializing temporary storage... [0s] -Building reference histograms... [0s] +Masking reference... [0.012s] +Initializing temporary storage... [0.007s] +Building reference histograms... [0.027s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.051s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.096s] +Building query seed array... [0.095s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.036s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.026s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.117s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.031s] +Computing hash join... [0.083s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.019s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.072s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.027s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.062s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.054s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.041s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.044s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.018s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.055s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.036s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.028s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.053s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.032s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.071s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.053s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.017s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.028s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.052s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.046s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.044s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.033s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.048s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.026s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.037s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.037s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.002s] +Computing alignments... [0.086s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10860,15 +10896,15 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.255s +Total time = 11.211s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ rm -rf /tmp/tmp.72ZJtdlCl4 ++ rm -rf /tmp/tmp.A8efFsAV1o make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.11 -B/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -10900,8 +10936,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.11-2_amd64.deb'. dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.11-2_amd64.deb'. +dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.11-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.11-2_amd64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.11-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -10909,12 +10945,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1134213 and its subdirectories -I: Current time: Sun Apr 12 17:16:56 -12 2026 -I: pbuilder-time-stamp: 1776057416 +I: removing directory /srv/workspace/pbuilder/953146 and its subdirectories +I: Current time: Tue Mar 11 13:45:12 +14 2025 +I: pbuilder-time-stamp: 1741650312