Diff of the two buildlogs: -- --- b1/build.log 2025-02-18 00:51:23.109998587 +0000 +++ b2/build.log 2025-02-18 01:02:19.940462352 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Feb 17 12:25:02 -12 2025 -I: pbuilder-time-stamp: 1739838302 +I: Current time: Mon Mar 23 21:14:27 +14 2026 +I: pbuilder-time-stamp: 1774250067 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -52,52 +52,84 @@ dpkg-source: info: applying fmt10.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/842768/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 23 07:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='bfd9cb57babe43e18c1c07c1cf68c494' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='842768' - PS1='# ' - PS2='> ' + INVOCATION_ID=5af4075ad5894561bbe2bc6ccc525ce1 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2501261 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bjbYjWk4/pbuilderrc_OxAU --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bjbYjWk4/b1 --logfile b1/build.log genomicsdb_1.5.4-5.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bjbYjWk4/pbuilderrc_xNOz --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bjbYjWk4/b2 --logfile b2/build.log genomicsdb_1.5.4-5.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/842768/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -110,7 +142,7 @@ Depends: debhelper-compat (= 13), cmake, default-jdk, javahelper, libbz2-dev, libcatch2-dev, libcurlpp-dev, libfmt-dev, libmuparserx-dev, libprotobuf-dev, libspdlog-dev, libssl-dev, liblzma-dev, maven-debian-helper, mpi-default-dev, protobuf-compiler, rapidjson-dev, testng, uuid-dev, libbuild-helper-maven-plugin-java, libcommons-io-java, libcommons-lang3-java, libgetopt-java, libguava-java, libhtsjdk-java, libjson-simple-java, liblog4j2-java, libmaven-antrun-plugin-java, libprotobuf-java, libsurefire-java, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19798 files and directories currently installed.) +(Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -697,10 +729,10 @@ Get: 502 http://deb.debian.org/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 503 http://deb.debian.org/debian unstable/main amd64 testng all 6.9.12-4 [795 kB] Get: 504 http://deb.debian.org/debian unstable/main amd64 uuid-dev amd64 2.40.4-4 [47.7 kB] -Fetched 399 MB in 18s (21.9 MB/s) +Fetched 399 MB in 15s (26.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19798 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19848 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_257.3-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (257.3-1) ... Selecting previously unselected package libapparmor1:amd64. @@ -708,7 +740,7 @@ Unpacking libapparmor1:amd64 (3.1.7-4) ... Setting up libsystemd-shared:amd64 (257.3-1) ... Selecting previously unselected package systemd. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19811 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19861 files and directories currently installed.) Preparing to unpack .../systemd_257.3-1_amd64.deb ... Unpacking systemd (257.3-1) ... Setting up libapparmor1:amd64 (3.1.7-4) ... @@ -722,7 +754,7 @@ Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20754 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20804 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_257.3-1_amd64.deb ... Unpacking systemd-sysv (257.3-1) ... Selecting previously unselected package libdbus-1-3:amd64. @@ -762,7 +794,7 @@ Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21202 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21252 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. @@ -798,7 +830,7 @@ Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22212 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22262 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package sgml-base. @@ -2332,8 +2364,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Feb 18 00:31:11 UTC 2025. -Universal Time is now: Tue Feb 18 00:31:11 UTC 2025. +Local time is now: Mon Mar 23 07:17:10 UTC 2026. +Universal Time is now: Mon Mar 23 07:17:10 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2971,7 +3003,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/genomicsdb-1.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genomicsdb_1.5.4-5_source.changes +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/genomicsdb-1.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../genomicsdb_1.5.4-5_source.changes dpkg-buildpackage: info: source package genomicsdb dpkg-buildpackage: info: source version 1.5.4-5 dpkg-buildpackage: info: source distribution unstable @@ -3098,8 +3134,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (15.0s) --- Generating done (0.8s) +-- Configuring done (3.3s) +-- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: @@ -3162,8 +3198,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (2.3s) --- Generating done (0.7s) +-- Configuring done (0.7s) +-- Generating done (1.4s) -- Build files have been written to: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu # Configuring the Java part using Maven. # First we put the arch triplet in d/maven.properties for the tests. @@ -3179,81 +3215,131 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4' dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.4 -B/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build +make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build +make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/protobuf_ep.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 0%] Built target protobuf_ep [ 1%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o [ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 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/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/knetfile.c -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o [ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/resources /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources 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genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o +[ 4%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o +[ 4%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o +make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kfunc.c.o 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'/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/resources /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake "--color=" +[ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -MF CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/bgzf.c +[ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT 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+[ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o +[ 7%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o +[ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o +[ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/faidx.c.o.d -o 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genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o +[ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o +[ 9%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hfile.c cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec 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-I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hts.c +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/md5.c cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/array/array_sorted_write_state.cc -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o -MF CMakeFiles/genomicsdb-hts.dir/multipart.c.o.d -o CMakeFiles/genomicsdb-hts.dir/multipart.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/multipart.c +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -MF CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d -o CMakeFiles/genomicsdb-hts.dir/probaln.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/probaln.c cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc -[ 5%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc -[ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/faidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/faidx.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/faidx.c -[ 5%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -[ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -MF CMakeFiles/genomicsdb-hts.dir/realn.c.o.d -o CMakeFiles/genomicsdb-hts.dir/realn.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/realn.c +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/regidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/regidx.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/regidx.c cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec.cc -[ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o -MF CMakeFiles/genomicsdb-hts.dir/header.c.o.d -o 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-I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_blosc.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_filter.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array 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-I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_filter_delta_encode.cc +[ 11%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_gzip.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_lz4.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_rle.cc +[ 11%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_zstd.cc +[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o +[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle/bitshuffle_core.c +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o -MF CMakeFiles/genomicsdb-hts.dir/region.c.o.d -o CMakeFiles/genomicsdb-hts.dir/region.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/region.c +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle/iochain.c +[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o -MF CMakeFiles/genomicsdb-hts.dir/sam.c.o.d -o CMakeFiles/genomicsdb-hts.dir/sam.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/sam.c +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -MF CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o.d -o CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/synced_bcf_reader.c +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -MF 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hfile.c -[ 6%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hfile_net.c +[ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/vcf_sweep.c +[ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/fragment.cc +[ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/book_keeping.cc +[ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/read_state.cc /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hfile_libcurl.c: In function 'libcurl_open': /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hfile_libcurl.c:1335:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, @@ -3262,60 +3348,92 @@ /usr/include/x86_64-linux-gnu/curl/curl.h:2897:3: note: declared here 2897 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/write_state.cc +[ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/metadata/metadata.cc +[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -MF CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/tbx.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/tbx.c make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hts.c -[ 7%] Built target PROTOBUF_GENERATED_CXX_TARGET +[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/textutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/textutils.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/textutils.c +[ 15%] Built target PROTOBUF_GENERATED_CXX_TARGET make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake "--color=" -[ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts_os.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/hts_os.c +[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o +[ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/metadata/metadata_iterator.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 7%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc -[ 7%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o -MF CMakeFiles/genomicsdb-hts.dir/md5.c.o.d -o CMakeFiles/genomicsdb-hts.dir/md5.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/md5.c -[ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o -MF CMakeFiles/genomicsdb-hts.dir/multipart.c.o.d -o CMakeFiles/genomicsdb-hts.dir/multipart.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/multipart.c -[ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -MF CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d -o CMakeFiles/genomicsdb-hts.dir/probaln.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/probaln.c -[ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -MF CMakeFiles/genomicsdb-hts.dir/realn.c.o.d -o CMakeFiles/genomicsdb-hts.dir/realn.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/realn.c -[ 8%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc -[ 8%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/regidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/regidx.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/regidx.c -[ 9%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration 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CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/synced_bcf_reader.c -[ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/vcf_sweep.c -[ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -MF CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/tbx.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/tbx.c -[ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/textutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/textutils.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/textutils.c -[ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -MF CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o.d -o CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/thread_pool.c -[ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/vcf.c -[ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o +[ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/vcfutils.c -[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o +[ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/error.cc +[ 17%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc +[ 18%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_codecs.c -[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o +[ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb 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src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc +[ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations_columnar.cc +[ 19%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc +[ 19%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_decode.c -[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o +[ 19%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc +[ 19%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_encode.c -[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o +[ 19%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_external.c -[ 12%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_blosc.cc +[ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_index.c +[ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_samtools.c +[ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_io.c +[ 21%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_stats.c +[ 21%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/mFILE.c +[ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/hilbert_curve.cc +[ 21%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_cell.cc +[ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_storage_manager.cc +[ 22%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o +[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/progress_bar.cc +[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/utils.cc +[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/uri.cc +[ 23%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_field_data.cc +[ 23%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/open_trace_file.c +[ 23%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc +[ 24%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/pooled_alloc.c +[ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc +[ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant.cc +[ 25%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/rANS_static.c +[ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/query_variants.cc +[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -3361,16 +3479,68 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_index.c -[ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_filter.cc -[ 14%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations_columnar.cc -[ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_filter_bit_shuffle.cc -[ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_filter_delta_encode.cc +[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc:23: +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/c++/14/bits/locale_classes.h:40, + from /usr/include/c++/14/bits/ios_base.h:41, + from /usr/include/c++/14/ios:44, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:27: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations_columnar.cc:23: +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/c++/14/bits/locale_classes.h:40, + from /usr/include/c++/14/bits/ios_base.h:41, + from /usr/include/c++/14/ios:44, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:27: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/tiledb_loader_text_file.cc +[ 27%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_buffer.cc +[ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/load_operators.cc +[ 28%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/string_alloc.c +[ 28%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_fs.cc +[ 28%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_manager_config.cc +[ 28%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_manager.cc /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc: In function 'int tiledb_array_set_schema(TileDB_ArraySchema*, const char*, const char**, int, int64_t, int, const int*, const int*, const int*, const int*, const int*, int, const char**, int, const void*, size_t, const void*, size_t, int, const int*)': /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc:409:22: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 409 | (int*) malloc((attribute_num)*sizeof(int)); @@ -3414,39 +3584,11 @@ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ -[ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_gzip.cc -[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_io.c -[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_samtools.c -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc: In function 'int tiledb_metadata_set_schema(TileDB_MetadataSchema*, const char*, const char**, int, int64_t, const int*, const int*, const int*, const int*)': -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc:1131:22: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] - 1131 | (int*) malloc((attribute_num)*sizeof(int)); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here - 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ - | ^~~~~~ -[ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/cram_stats.c -[ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/mFILE.c -[ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/open_trace_file.c -[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/pooled_alloc.c -[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/rANS_static.c -[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib/cram/string_alloc.c -[ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_lz4.cc +[ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/genomicsdb_importer.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations_columnar.cc:23: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_cell.cc:23: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3458,68 +3600,18 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:27: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_rle.cc -[ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc: In member function 'void BroadCombinedGVCFOperator::handle_INFO_fields(const Variant&)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:622:37: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 622 | auto stringified = std::move(m_field_handlers[bcf_ht_type]->stringify_2D_vector(*(BCF_INFO_GET_FIELD_INFO_PTR(curr_tuple)))); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:622:37: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:643:34: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 643 | auto result_str = std::move( - | ~~~~~~~~~^ - 644 | GET_HISTOGRAM_FIELD_HANDLER_PTR_FROM_TUPLE(curr_INFO_histogram_tuple)->stringify_histogram( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 645 | length_descriptor.get_vcf_delimiter(0u), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 646 | length_descriptor.get_vcf_delimiter(1u) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 647 | )); - | ~~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:643:34: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc: In member function 'void BroadCombinedGVCFOperator::handle_deletions(Variant&)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:1106:37: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 1106 | auto null_PL_ptr = std::move(std::unique_ptr(nullptr)); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:1106:37: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc: In member function 'virtual void AlleleCountOperator::operate_on_columnar_cell(const GenomicsDBColumnarCell&, const VariantQueryConfig&, const VariantArraySchema&)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc:984:36: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 984 | auto REF_ALT_pair = std::move(std::pair( - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 985 | std::string(REF_ptr, REF_length), - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 986 | std::string(ALT_ptr+m_cell_ALT_offsets[ALT_idx], - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 987 | m_cell_ALT_offsets[ALT_idx+1]-m_cell_ALT_offsets[ALT_idx]-1))); //-1 to ignore delim char - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc:984:36: note: remove 'std::move' call -[ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc -[ 19%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/codec_zstd.cc -[ 19%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle/bitshuffle_core.c -[ 19%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle/iochain.c -[ 19%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/expressions/expression.cc -[ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/book_keeping.cc -[ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/fragment.cc +[ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/tiledb_loader_file_base.cc +[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/tiledb_loader.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc:23: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_storage_manager.cc:25: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3531,26 +3623,16 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:27: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:28: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 20%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_cell.cc -[ 20%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/read_state.cc -[ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/fragment/write_state.cc -[ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/metadata/metadata.cc -[ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/metadata/metadata_iterator.cc -[ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_storage_manager.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_cell.cc:23: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc:24: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3562,37 +3644,29 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:26: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/error.cc -[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/hilbert_curve.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_storage_manager.cc:25: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_field_data.cc:23: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/c++/14/bits/locale_classes.h:40, - from /usr/include/c++/14/bits/ios_base.h:41, - from /usr/include/c++/14/ios:44, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:28: +In file included from /usr/include/c++/14/bits/stl_construct.h:61, + from /usr/include/c++/14/bits/stl_tempbuf.h:61, + from /usr/include/c++/14/memory:66, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/mem_utils.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:25: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc:25: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3604,67 +3678,20 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/gt_remapper.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/gt_remapper_template_definition.h:25, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:23: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/progress_bar.cc -[ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/uri.cc -[ 24%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_field_data.cc -[ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/misc/utils.cc -[ 25%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_buffer.cc -[ 26%] Linking C shared library libgenomicsdb-hts.so -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb-hts.dir/link.txt --verbose=1 -/usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/genomicsdb-hts.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-hts.so -o libgenomicsdb-hts.so "CMakeFiles/genomicsdb-hts.dir/kfunc.c.o" "CMakeFiles/genomicsdb-hts.dir/knetfile.c.o" "CMakeFiles/genomicsdb-hts.dir/kstring.c.o" "CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o" "CMakeFiles/genomicsdb-hts.dir/bgzf.c.o" "CMakeFiles/genomicsdb-hts.dir/errmod.c.o" "CMakeFiles/genomicsdb-hts.dir/faidx.c.o" "CMakeFiles/genomicsdb-hts.dir/header.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o" "CMakeFiles/genomicsdb-hts.dir/hts.c.o" "CMakeFiles/genomicsdb-hts.dir/hts_os.c.o" "CMakeFiles/genomicsdb-hts.dir/md5.c.o" "CMakeFiles/genomicsdb-hts.dir/multipart.c.o" "CMakeFiles/genomicsdb-hts.dir/probaln.c.o" "CMakeFiles/genomicsdb-hts.dir/realn.c.o" "CMakeFiles/genomicsdb-hts.dir/regidx.c.o" "CMakeFiles/genomicsdb-hts.dir/region.c.o" "CMakeFiles/genomicsdb-hts.dir/sam.c.o" "CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o" "CMakeFiles/genomicsdb-hts.dir/tbx.c.o" "CMakeFiles/genomicsdb-hts.dir/textutils.c.o" "CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf.c.o" "CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o" /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 26%] Built target genomicsdb-hts -[ 26%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_fs.cc -[ 26%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_manager.cc -[ 26%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_manager_config.cc -[ 27%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_posixfs.cc -[ 27%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4/lz4.c -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_field_data.cc:23: -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_construct.h:61, - from /usr/include/c++/14/bits/stl_tempbuf.h:61, - from /usr/include/c++/14/memory:66, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:26: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_array_schema.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc:24: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc -[ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -MF 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-I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant.cc -[ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/query_variants.cc -[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc: In function 'int tiledb_metadata_set_schema(TileDB_MetadataSchema*, const char*, const char**, int, int64_t, const int*, const int*, const int*, const int*)': +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/c_api/tiledb.cc:1131:22: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + 1131 | (int*) malloc((attribute_num)*sizeof(int)); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here + 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ + | ^~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_field_handler.cc:24: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:25: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3676,15 +3703,15 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:27: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/gt_remapper.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/gt_remapper_template_definition.h:25, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:23: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc:25: +[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/memory_measure.cc +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc:23: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3696,15 +3723,10 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_array_schema.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/variant_array_schema.cc:24: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc -[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -3747,7 +3769,10 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc:23: +[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/histogram.cc +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc:24: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3759,14 +3784,17 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:26: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/tiledb_loader_text_file.cc +[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper_pb.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc:24: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:24: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3778,15 +3806,30 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:26: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/vid_mapper.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:23: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc: In member function 'virtual void AlleleCountOperator::operate_on_columnar_cell(const GenomicsDBColumnarCell&, const VariantQueryConfig&, const VariantArraySchema&)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc:984:36: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 984 | auto REF_ALT_pair = std::move(std::pair( + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 985 | std::string(REF_ptr, REF_length), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 986 | std::string(ALT_ptr+m_cell_ALT_offsets[ALT_idx], + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 987 | m_cell_ALT_offsets[ALT_idx+1]-m_cell_ALT_offsets[ALT_idx]-1))); //-1 to ignore delim char + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/variant_operations.cc:984:36: note: remove 'std::move' call +[ 31%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/src/storage/storage_posixfs.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:24: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/load_operators.cc:24: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3799,12 +3842,24 @@ from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/vid_mapper.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:23: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/load_operators.cc +[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 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-I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable 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-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc +[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/timer.cc +[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/genomicsdb_logger.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -3827,8 +3882,34 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/genomicsdb_importer.cc +[ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc: In member function 'void BroadCombinedGVCFOperator::handle_INFO_fields(const Variant&)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:622:37: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 622 | auto stringified = std::move(m_field_handlers[bcf_ht_type]->stringify_2D_vector(*(BCF_INFO_GET_FIELD_INFO_PTR(curr_tuple)))); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:622:37: note: remove 'std::move' call +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:643:34: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 643 | auto result_str = std::move( + | ~~~~~~~~~^ + 644 | GET_HISTOGRAM_FIELD_HANDLER_PTR_FROM_TUPLE(curr_INFO_histogram_tuple)->stringify_histogram( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 645 | length_descriptor.get_vcf_delimiter(0u), + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 646 | length_descriptor.get_vcf_delimiter(1u) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 647 | )); + | ~~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:643:34: note: remove 'std::move' call +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc: In member function 'void BroadCombinedGVCFOperator::handle_deletions(Variant&)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:1106:37: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 1106 | auto null_PL_ptr = std::move(std::unique_ptr(nullptr)); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:1106:37: note: remove 'std::move' call +[ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/vcf_adapter.cc +[ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc: In member function 'std::vector GenomicsDBMultiDVectorField::parse_and_store_numeric(const char*, size_t)': /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 436 | auto total_size_of_multi_d_data_vec = std::move(GenomicsDBMultiDVectorField::parse_and_store_numeric( @@ -3838,40 +3919,6 @@ 438 | str, str_length)); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: note: remove 'std::move' call -[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/tiledb_loader_file_base.cc -[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/tiledb_loader.cc -[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/memory_measure.cc -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/loader/load_operators.cc:24: -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/c++/14/bits/locale_classes.h:40, - from /usr/include/c++/14/bits/ios_base.h:41, - from /usr/include/c++/14/ios:44, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/vid_mapper.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:26: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/histogram.cc -[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper_pb.cc -[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/lut.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -3896,6 +3943,18 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api 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/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -3914,49 +3973,18 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/genomicsdb_logger.cc -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 33%] Built target TILEDB_CORE_OBJECTS -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd 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-I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc -[ 34%] Linking CXX static library libgenomicsdb-tiledb.a -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -P CMakeFiles/tiledb_static.dir/cmake_clean_target.cmake -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_static.dir/link.txt --verbose=1 -/usr/bin/ar qc libgenomicsdb-tiledb.a CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o 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CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -/usr/bin/ranlib libgenomicsdb-tiledb.a -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 34%] Built target tiledb_static -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 35%] Linking CXX shared library libgenomicsdb-tiledb.so -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_shared.dir/link.txt --verbose=1 -[ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/vcf_adapter.cc +[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/pb_config.cc +[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/annotation_service.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/known_field_info.cc:27: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc:23: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3968,27 +3996,16 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/known_field_info.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/known_field_info.cc:24: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 35%] Built target tiledb_shared -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 35%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -MF CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d -o CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/array/test_array_schema.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:33: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/known_field_info.cc:27: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -4000,11 +4017,14 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/vid_mapper.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:25: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/known_field_info.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/known_field_info.cc:24: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc:24: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] @@ -4024,26 +4044,12 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void VidMapper::parse_string_length_descriptor(const char*, const char*, size_t, FieldLengthDescriptor&, size_t)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:757:47: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 757 | auto length_value_upper_case_str = std::move(std::string(length_value_str)); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:757:47: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void FileBasedVidMapper::common_constructor_initialization(const rapidjson::Value&)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:1269:40: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 1269 | auto class_name = std::move(std::string(vcf_field_class_array[i].GetString())); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:1269:40: note: remove 'std::move' call -[ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc +[ 37%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_field.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc:23: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:33: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -4055,50 +4061,29 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/vid_mapper.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/vcf2binary.cc -[ 36%] Building C object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cc -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/hfile_genomicsdb.c -[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/vcf/htslib_fs_adapter.cc -[ 37%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/variant_query_config.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 37%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -MF CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d -o CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/benchmark/test_print_array_schema.cc -[ 37%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/genomicsdb_config_base.cc -[ 37%] Linking CXX executable test_array_schema -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema.dir/link.txt --verbose=1 -[ 38%] Linking CXX executable test_print_array_schema -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_array_schema.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema.dir/link.d CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -o test_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/json_config.cc -[ 38%] Built target test_array_schema -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 38%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -MF CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d -o CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_array_schema.dir/link.d CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -o test_print_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +[ 38%] Linking C shared library libgenomicsdb-hts.so +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb-hts.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/variant_query_config.cc:26: +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_algobase.h:65, + from /usr/include/c++/14/algorithm:60, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/variant_query_config.cc:24: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +/usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/genomicsdb-hts.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-hts.so -o libgenomicsdb-hts.so "CMakeFiles/genomicsdb-hts.dir/kfunc.c.o" "CMakeFiles/genomicsdb-hts.dir/knetfile.c.o" "CMakeFiles/genomicsdb-hts.dir/kstring.c.o" "CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o" "CMakeFiles/genomicsdb-hts.dir/bgzf.c.o" "CMakeFiles/genomicsdb-hts.dir/errmod.c.o" "CMakeFiles/genomicsdb-hts.dir/faidx.c.o" "CMakeFiles/genomicsdb-hts.dir/header.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o" "CMakeFiles/genomicsdb-hts.dir/hts.c.o" "CMakeFiles/genomicsdb-hts.dir/hts_os.c.o" "CMakeFiles/genomicsdb-hts.dir/md5.c.o" "CMakeFiles/genomicsdb-hts.dir/multipart.c.o" "CMakeFiles/genomicsdb-hts.dir/probaln.c.o" "CMakeFiles/genomicsdb-hts.dir/realn.c.o" "CMakeFiles/genomicsdb-hts.dir/regidx.c.o" "CMakeFiles/genomicsdb-hts.dir/region.c.o" "CMakeFiles/genomicsdb-hts.dir/sam.c.o" "CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o" "CMakeFiles/genomicsdb-hts.dir/tbx.c.o" "CMakeFiles/genomicsdb-hts.dir/textutils.c.o" "CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf.c.o" "CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o" /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 38%] Built target test_print_array_schema -[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/pb_config.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -4120,57 +4105,47 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/variant_query_config.cc:26: -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_algobase.h:65, - from /usr/include/c++/14/algorithm:60, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/variant_query_config.cc:24: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/annotation_service.cc -[ 39%] Linking CXX executable test_print_book_keeping -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_book_keeping.dir/link.txt --verbose=1 -[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/genomicsdb_config_base.cc: In member function 'const bool GenomicsDBConfigBase::has_array_name(int) const': /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/genomicsdb_config_base.cc:101:53: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 101 | (!m_single_array_name && m_array_names.size() > rank)) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_book_keeping.dir/link.d CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -o test_print_book_keeping ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 39%] Built target test_print_book_keeping -[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_field.cc +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void VidMapper::parse_string_length_descriptor(const char*, const char*, size_t, FieldLengthDescriptor&, size_t)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:757:47: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 757 | auto length_value_upper_case_str = std::move(std::string(length_value_str)); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:757:47: note: remove 'std::move' call +[ 38%] Built target genomicsdb-hts +[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_plink.cc +[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_utils.cc +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void FileBasedVidMapper::common_constructor_initialization(const rapidjson::Value&)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:1269:40: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 1269 | auto class_name = std::move(std::string(vcf_field_class_array[i].GetString())); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/utils/vid_mapper.cc:1269:40: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/json_config.cc: In member function 'rapidjson::Document GenomicsDBConfigBase::read_from_file(const std::string&, int)': /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/json_config.cc:193:43: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 193 | rapidjson::Document json_doc = std::move(parse_json_file(filename)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/json_config.cc:193:43: note: remove 'std::move' call -[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader 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CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_plink.cc -[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_utils.cc +[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_json_processor.cc +[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_coordinates.pb.cc /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/json_config.cc: In member function 'void GenomicsDBImportConfig::read_from_file(const std::string&, int)': /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/json_config.cc:704:43: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 704 | rapidjson::Document json_doc = std::move(GenomicsDBConfigBase::read_from_file(filename, rank)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/config/json_config.cc:704:43: note: remove 'std::move' call -[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb_json_processor.cc -[ 41%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_coordinates.pb.cc -[ 41%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o +[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_callsets_mapping.pb.cc -[ 41%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o +[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_export_config.pb.cc +[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_import_config.pb.cc +[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_vid_mapping.pb.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -4189,10 +4164,6 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 42%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_import_config.pb.cc -[ 42%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/genomicsdb_vid_mapping.pb.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -4210,958 +4181,1056 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 40%] Built target TILEDB_CORE_OBJECTS +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -MF CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d -o CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" +[ 40%] Linking CXX static library libgenomicsdb-tiledb.a +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -P CMakeFiles/tiledb_static.dir/cmake_clean_target.cmake +[ 41%] Linking CXX shared library libgenomicsdb-tiledb.so +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_shared.dir/link.txt --verbose=1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_static.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,--dependency-file=CMakeFiles/tiledb_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-tiledb.so -o libgenomicsdb-tiledb.so CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o 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CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o +/usr/bin/ranlib libgenomicsdb-tiledb.a +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 41%] Built target tiledb_static +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -MF CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d -o 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+make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test 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/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -MF CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d -o CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc -[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -MF CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d -o CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_dense_array_api.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -MF CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d -o CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_sparse_array_api.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -MF CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d -o CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -MF CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d -o CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/codec/test_codec.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -MF CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d -o CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/codec/test_codec_filter.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -MF CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d -o CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/expressions/test_expressions.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -MF CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d -o CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/expressions/test_filter_api.cc -make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -MF CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d -o CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_mem_utils.cc -In file included from /usr/include/c++/14/bits/basic_string.h:47, - from /usr/include/c++/14/string:54: -In function 'constexpr std::size_t std::__sv_check(size_t, size_t, const char*)', - inlined from 'constexpr std::basic_string_view<_CharT, _Traits> std::basic_string_view<_CharT, _Traits>::substr(size_type, size_type) const [with _CharT = char; _Traits = std::char_traits]' at /usr/include/c++/14/string_view:336:25, - inlined from 'std::string_view get_segment(std::string_view, int)' at /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc:820:20: -/usr/include/c++/14/string_view:72:5: warning: 'pos' may be used uninitialized [-Wmaybe-uninitialized] - 72 | if (__pos > __size) - | ^~ -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc: In function 'std::string_view get_segment(std::string_view, int)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc:807:26: note: 'pos' was declared here - 807 | std::string::size_type pos; - | ^~~ -[ 46%] Linking CXX executable test_codec -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec.dir/link.d CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -o test_codec ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 46%] Built target test_codec -make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -MF CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d -o CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_uri.cc -[ 46%] Linking CXX executable test_mem_utils -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mem_utils.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_mem_utils.dir/link.d CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -o test_mem_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 46%] Built target test_mem_utils -make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 47%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -MF CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d -o CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc -[ 47%] Linking CXX executable test_codec_filter -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec_filter.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec_filter.dir/link.d CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -o test_codec_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 41%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o +[ 41%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 47%] Built target test_codec_filter -make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -MF CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d -o CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/array/test_array_schema.cc +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -MF CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d -o CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/benchmark/test_print_array_schema.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o +make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -MF CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d -o CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 48%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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-I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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-I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -MF CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d -o CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/storage_manager/test_posixfs.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -MF CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d -o CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc +[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o +[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o +[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -MF CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d -o CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc +[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -MF CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d -o CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_uri.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -MF CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d -o CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_sparse_array_api.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -MF CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d -o CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc +[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -MF CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d -o CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc +[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o +[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -MF CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d -o CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/expressions/test_expressions.cc +[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -MF CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d -o CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_mem_utils.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -MF CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d -o CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/codec/test_codec_filter.cc +[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o +[ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -MF CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d -o CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/codec/test_codec.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -MF CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d -o CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/expressions/test_filter_api.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 48%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o +[ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -MF CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d -o CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/storage_manager/test_storage_buffer.cc -[ 48%] Linking CXX executable test_filter_api -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_filter_api.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 48%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o +[ 46%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -MF CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d -o CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_3d.cc +[ 47%] Linking CXX executable test_print_array_schema +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_array_schema.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 48%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -MF CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_aio_read_dense.cc +[ 48%] Linking CXX executable tiledb_array_3d +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_3d.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_array_schema.dir/link.d CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -o test_print_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake "--color=" -[ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -MF CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_aio_write_dense.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" +[ 48%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -MF CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_aio_read_dense.cc +[ 48%] Built target test_print_array_schema +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 49%] Linking CXX executable tiledb_array_aio_read_dense -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script 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make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 50%] Linking CXX executable tiledb_array_3d -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_3d.dir/link.txt --verbose=1 -[ 50%] Built target test_filter_api -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build +[ 48%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -MF CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d -o CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_consolidate.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 50%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -MF CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d -o 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-Wl,--dependency-file=CMakeFiles/tiledb_array_aio_read_dense.dir/link.d CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -o tiledb_array_aio_read_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 51%] Built target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake "--color=" +[ 48%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -MF CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d -o CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_create_dense.cc +[ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -MF CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_aio_write_dense.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -MF CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d -o CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_create_sparse.cc -[ 52%] Linking CXX executable tiledb_array_create_sparse -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_sparse.dir/link.txt --verbose=1 -[ 52%] Linking CXX executable tiledb_array_create_dense -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_dense.dir/link.txt --verbose=1 +[ 49%] Linking CXX executable test_print_book_keeping +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_book_keeping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_3d.dir/link.d CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -o tiledb_array_3d ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 52%] Built target tiledb_array_3d +[ 49%] Built target tiledb_array_3d make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_write_dense.dir/link.d CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -o tiledb_array_aio_write_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -MF CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d -o CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_iterator_dense.cc -[ 52%] Built target tiledb_array_aio_write_dense +[ 49%] Linking CXX executable tiledb_array_create_dense +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_dense.dir/link.txt --verbose=1 +[ 49%] Linking CXX executable tiledb_array_aio_write_dense +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_write_dense.dir/link.txt --verbose=1 +[ 50%] Linking CXX executable tiledb_array_create_sparse +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_sparse.dir/link.txt --verbose=1 +[ 50%] Linking CXX executable tiledb_array_aio_read_dense +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_read_dense.dir/link.txt --verbose=1 +[ 51%] Linking CXX executable tiledb_array_consolidate +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_consolidate.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_book_keeping.dir/link.d CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -o test_print_book_keeping ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 51%] Built target test_print_book_keeping make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o +[ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_consolidate.dir/link.d CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -o tiledb_array_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 52%] Linking CXX executable tiledb_array_iterator_dense +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_dense.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_write_dense.dir/link.d CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -o tiledb_array_aio_write_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 53%] Built target tiledb_array_consolidate +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_dense.dir/link.d CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -o tiledb_array_create_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 52%] Built target tiledb_array_create_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse_filter.cc -[ 54%] Linking CXX executable test_array_iterator -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_iterator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_sparse.dir/link.d CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -o tiledb_array_create_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 54%] Linking CXX executable tiledb_array_iterator_sparse -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse.dir/link.txt --verbose=1 -[ 54%] Linking CXX executable tiledb_array_iterator_dense -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_dense.dir/link.txt --verbose=1 -[ 54%] Built target tiledb_array_create_sparse +[ 52%] Built target tiledb_array_aio_write_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_read_dense.dir/link.d CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -o tiledb_array_aio_read_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 54%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_dense.cc -[ 54%] Linking CXX executable test_array_schema_api -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema_api.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_dense.dir/link.d CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -o tiledb_array_create_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 54%] Built target tiledb_array_create_dense +[ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_dense.cc +[ 52%] Built target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend +[ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse_filter.cc cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" -[ 55%] Linking CXX executable tiledb_array_iterator_sparse_filter -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o +[ 52%] Linking CXX executable tiledb_array_iterator_sparse +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse.dir/link.txt --verbose=1 +[ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_sparse.dir/link.d CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -o tiledb_array_create_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_sparse.cc -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /usr/include/catch2/internal/catch_stringref.hpp:16, - from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:13, - from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, - from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, - from /usr/include/catch2/catch_all.hpp:25, - from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2/catch.h:39, - from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:39: -In function 'void* memcpy(void*, const void*, size_t)', - inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:184:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] - 29 | return __builtin___memcpy_chk (__dest, __src, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ - 30 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 - 181 | double j = 0.1, k = 0.2; - | ^ -In function 'void* memcpy(void*, const void*, size_t)', - inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:186:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] - 29 | return __builtin___memcpy_chk (__dest, __src, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ - 30 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 - 181 | double j = 0.1, k = 0.2; - | ^ -In function 'void* memcpy(void*, const void*, size_t)', - inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:191:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] - 29 | return __builtin___memcpy_chk (__dest, __src, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ - 30 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 - 181 | double j = 0.1, k = 0.2; - | ^ -In function 'void* memcpy(void*, const void*, size_t)', - inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:192:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] - 29 | return __builtin___memcpy_chk (__dest, __src, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ - 30 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 - 181 | double j = 0.1, k = 0.2; - | ^ -In function 'void* memcpy(void*, const void*, size_t)', - inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:196:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] - 29 | return __builtin___memcpy_chk (__dest, __src, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ - 30 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 - 181 | double j = 0.1, k = 0.2; - | ^ -In function 'void* memcpy(void*, const void*, size_t)', - inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:198:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] - 29 | return __builtin___memcpy_chk (__dest, __src, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ - 30 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': -/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 - 181 | double j = 0.1, k = 0.2; - | ^ +[ 53%] Built target tiledb_array_create_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 56%] Linking CXX executable tiledb_array_parallel_consolidate_dense -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.txt --verbose=1 -[ 56%] Linking CXX executable tiledb_array_parallel_consolidate_sparse -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.txt --verbose=1 -[ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o +[ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_1.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_dense.dir/link.d CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -o tiledb_array_iterator_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_iterator.dir/link.d CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -o test_array_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_consolidate.dir/link.d CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -o tiledb_array_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 56%] Built target tiledb_array_iterator_dense +[ 53%] Built target tiledb_array_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse.dir/link.d CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -o tiledb_array_iterator_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build -[ 56%] Built target test_array_iterator -[ 56%] Built target tiledb_array_iterator_sparse -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 54%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_2.cc +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_dense.dir/link.d CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -o tiledb_array_iterator_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 54%] Built target tiledb_array_iterator_dense +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o +[ 54%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_mpi_io_dense.cc +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples 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/usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -o tiledb_array_parallel_read_mpi_io_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 58%] Built target test_array_schema_api +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_mem_utils.dir/link.d CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -o test_mem_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 57%] Built target tiledb_array_iterator_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend +[ 57%] Built target tiledb_array_parallel_read_mpi_io_dense +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_uri.dir/link.d CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -o test_uri ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" +[ 57%] Built target test_mem_utils +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 58%] Built target test_uri -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" -[ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -o tiledb_array_parallel_consolidate_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_2.cc +[ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_1.cc +[ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_2.cc +[ 57%] Linking CXX executable tiledb_array_parallel_read_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.txt --verbose=1 +[ 57%] Linking CXX executable tiledb_array_parallel_read_sparse_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -o tiledb_array_parallel_consolidate_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_1.cc -[ 58%] Built target tiledb_array_parallel_consolidate_dense -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend -[ 58%] Built target tiledb_array_parallel_consolidate_sparse -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -o tiledb_array_parallel_consolidate_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 57%] Built target tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_2.cc -[ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o +[ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -MF CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d -o CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_primitive.cc -[ 60%] Linking CXX executable tiledb_array_parallel_read_mpi_io_dense -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.txt --verbose=1 -[ 60%] Linking CXX executable tiledb_array_parallel_read_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.txt --verbose=1 -[ 60%] Linking CXX executable tiledb_array_parallel_read_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -o tiledb_array_parallel_read_mpi_io_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 60%] Built target tiledb_array_parallel_read_mpi_io_dense +[ 58%] Built target tiledb_array_parallel_consolidate_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -o tiledb_array_iterator_sparse_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 60%] Linking CXX executable tiledb_array_parallel_read_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.txt --verbose=1 -[ 61%] Linking CXX executable tiledb_array_parallel_write_dense_1 -[ 61%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_1.cc -[ 61%] Linking CXX executable tiledb_array_parallel_write_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -o tiledb_array_parallel_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 61%] Built target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" -[ 62%] Linking CXX executable tiledb_array_parallel_write_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -o tiledb_array_parallel_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 59%] Linking CXX executable tiledb_array_parallel_write_dense_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.txt --verbose=1 +[ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 62%] Linking CXX executable tiledb_array_parallel_write_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.txt --verbose=1 -[ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_2.cc -[ 63%] Linking CXX executable tiledb_array_read_dense_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -o tiledb_array_parallel_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -o tiledb_array_parallel_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 63%] Built target tiledb_array_parallel_write_dense_1 +[ 59%] Built target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" -[ 63%] Linking CXX executable tiledb_array_primitive -[ 63%] Built target tiledb_array_parallel_read_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_primitive.dir/link.txt --verbose=1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" +[ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_2.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 59%] Built target tiledb_array_iterator_sparse_filter +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend +[ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -MF 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-I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -MF CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d -o CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_3.cc -[ 64%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o +[ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d -o 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CXX executable tiledb_array_parallel_write_sparse_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -o tiledb_array_parallel_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 64%] Built target tiledb_array_parallel_read_sparse_2 +[ 60%] Built target tiledb_array_parallel_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" -[ 64%] Linking CXX executable tiledb_array_read_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_2.dir/link.txt --verbose=1 +[ 61%] Linking CXX executable tiledb_array_parallel_write_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 64%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o +[ 61%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_1.cc -[ 65%] Linking CXX executable test_sparse_array_benchmark -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_benchmark.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -o tiledb_array_parallel_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -o tiledb_array_parallel_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 61%] Linking CXX executable test_array_schema +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -o tiledb_array_parallel_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 65%] Built target tiledb_array_parallel_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -o tiledb_array_parallel_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_2.cc -[ 65%] Built target tiledb_array_parallel_write_dense_2 +[ 61%] Built target tiledb_array_parallel_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build +[ 61%] Built target tiledb_array_parallel_read_sparse_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -o tiledb_array_parallel_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -o tiledb_array_parallel_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_1.cc -[ 65%] Built target tiledb_array_parallel_write_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" +[ 61%] Linking CXX executable tiledb_array_parallel_write_dense_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.txt --verbose=1 +[ 61%] Linking CXX executable tiledb_array_read_dense_3 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_3.dir/link.txt --verbose=1 +[ 62%] Linking CXX executable tiledb_array_read_dense_1 +[ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_1.dir/link.txt --verbose=1 +[ 62%] Linking CXX executable tiledb_array_primitive make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build -[ 65%] Built target tiledb_array_parallel_write_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_2.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_primitive.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 65%] Linking CXX executable tiledb_array_read_dense_3 +[ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_1.cc +[ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_2.cc +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -o tiledb_array_parallel_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 63%] Built target tiledb_array_parallel_write_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_3.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build -[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_2.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_1.dir/link.d CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -o tiledb_array_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o +[ 63%] Linking CXX executable tiledb_array_read_dense_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_2.dir/link.txt --verbose=1 +[ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -MF CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_sorted.cc -[ 66%] Built target tiledb_array_read_dense_1 +[ 63%] Linking CXX executable tiledb_array_read_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_1.dir/link.txt --verbose=1 +[ 64%] Linking CXX executable tiledb_array_read_dense_sorted +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_sorted.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema.dir/link.d CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -o test_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 65%] Linking CXX executable tiledb_array_read_sparse_2 +[ 65%] Linking CXX executable tiledb_array_read_sparse_filter_1 +[ 65%] Built target test_array_schema make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_2.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.txt --verbose=1 cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -o tiledb_array_parallel_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o +[ 65%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -MF CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d -o CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_1.cc -[ 67%] Linking CXX executable tiledb_array_read_dense_sorted -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_sorted.dir/link.txt --verbose=1 -[ 67%] Linking CXX executable tiledb_array_read_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_1.dir/link.txt --verbose=1 -[ 67%] Linking CXX executable tiledb_array_read_sparse_filter_1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_primitive.dir/link.d CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -o tiledb_array_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 67%] Built target tiledb_array_primitive +[ 65%] Built target tiledb_array_parallel_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_3.dir/link.d CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -o tiledb_array_read_dense_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" -[ 67%] Built target tiledb_array_read_dense_3 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_primitive.dir/link.d CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -o tiledb_array_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o +[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -o tiledb_array_parallel_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -MF CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d -o CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_2.cc -[ 68%] Linking CXX executable tiledb_array_read_sparse_filter_2 -[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -MF CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_1.cc -[ 69%] Linking CXX executable tiledb_array_read_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_2.dir/link.txt --verbose=1 -[ 69%] Linking CXX executable tiledb_array_update_dense_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_1.dir/link.txt --verbose=1 -[ 70%] Linking CXX executable tiledb_array_read_sparse_sorted -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_2.dir/link.d CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -o tiledb_array_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 66%] Built target tiledb_array_parallel_write_sparse_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" +[ 66%] Built target tiledb_array_primitive make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend -[ 70%] Built target tiledb_array_read_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_3.dir/link.d CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -o tiledb_array_read_dense_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_1.dir/link.d CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -o tiledb_array_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -[ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc +[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -MF CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_1.cc +[ 67%] Linking CXX executable tiledb_array_read_sparse_sorted +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.txt --verbose=1 +[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -MF CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_2.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_benchmark.dir/link.d CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -o test_sparse_array_benchmark ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 71%] Built target test_sparse_array_benchmark +[ 68%] Built target tiledb_array_read_dense_3 +[ 68%] Built target tiledb_array_read_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -o tiledb_array_read_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" +In file included from /usr/include/c++/14/bits/basic_string.h:47, + from /usr/include/c++/14/string:54: +In function 'constexpr std::size_t std::__sv_check(size_t, size_t, const char*)', + inlined from 'constexpr std::basic_string_view<_CharT, _Traits> std::basic_string_view<_CharT, _Traits>::substr(size_type, size_type) const [with _CharT = char; _Traits = std::char_traits]' at /usr/include/c++/14/string_view:336:25, + inlined from 'std::string_view get_segment(std::string_view, int)' at /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc:820:20: +/usr/include/c++/14/string_view:72:5: warning: 'pos' may be used uninitialized [-Wmaybe-uninitialized] + 72 | if (__pos > __size) + | ^~ +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc: In function 'std::string_view get_segment(std::string_view, int)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/src/api/genomicsdb.cc:807:26: note: 'pos' was declared here + 807 | std::string::size_type pos; + | ^~~ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 71%] Built target tiledb_array_read_dense_sorted +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" -[ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o +[ 68%] Linking CXX executable tiledb_array_read_sparse_filter_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.txt --verbose=1 +[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc +[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_2.cc +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -o tiledb_array_parallel_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_sorted.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -o tiledb_array_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 72%] Built target tiledb_array_read_sparse_1 +[ 68%] Built target tiledb_array_parallel_write_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" +[ 68%] Built target tiledb_array_read_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" -[ 73%] Linking CXX executable test_dense_array_api -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dense_array_api.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 73%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_1.cc -[ 73%] Linking CXX executable tiledb_array_update_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_2.dir/link.txt --verbose=1 -[ 73%] Linking CXX executable tiledb_array_update_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_1.dir/link.txt --verbose=1 -[ 74%] Linking CXX executable tiledb_array_write_dense_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -o tiledb_array_read_sparse_filter_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -o tiledb_array_read_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 74%] Linking CXX executable tiledb_array_update_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -o tiledb_array_read_sparse_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 74%] Built target tiledb_array_read_sparse_filter_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_1.cc +[ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_sorted.cc +[ 69%] Built target tiledb_array_read_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend -[ 74%] Linking CXX executable tiledb_array_write_dense_sorted make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_sorted.dir/link.txt --verbose=1 -[ 74%] Built target tiledb_array_read_sparse_sorted +[ 69%] Linking CXX executable test_codec_filter +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec_filter.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_2.cc +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_2.dir/link.d CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -o tiledb_array_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 69%] Built target tiledb_array_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -o tiledb_array_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o +[ 69%] Linking CXX executable tiledb_array_update_dense_1 +[ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -MF CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_3.cc -[ 74%] Built target tiledb_array_read_sparse_2 -[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_1.dir/link.txt --verbose=1 +[ 69%] Linking CXX executable tiledb_array_update_dense_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_2.dir/link.txt --verbose=1 +[ 69%] Linking CXX executable tiledb_array_update_sparse_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -o tiledb_array_read_sparse_filter_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 69%] Built target tiledb_array_read_sparse_filter_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_2.cc cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_1.dir/link.d CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -o tiledb_array_update_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 74%] Linking CXX executable tiledb_array_write_dense_2 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -o tiledb_array_read_sparse_filter_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_2.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o +[ 70%] Linking CXX executable tiledb_array_write_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_1.dir/link.txt --verbose=1 +[ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -MF CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_4.cc -[ 74%] Built target tiledb_array_update_dense_1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -o tiledb_array_read_sparse_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 70%] Built target tiledb_array_read_sparse_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" -[ 74%] Built target tiledb_array_read_sparse_filter_2 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -o tiledb_array_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -o tiledb_array_read_sparse_filter_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 70%] Linking CXX executable tiledb_array_write_dense_2 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec_filter.dir/link.d CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -o test_codec_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_2.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake "--color=" -[ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o +[ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -MF CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d -o CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_catching_errors.cc -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -MF CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d -o CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_clear_delete_move.cc -[ 76%] Linking CXX executable tiledb_array_write_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_1.dir/link.txt --verbose=1 -[ 77%] Linking CXX executable tiledb_array_write_sparse_3 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_3.dir/link.txt --verbose=1 -[ 78%] Linking CXX executable tiledb_clear_delete_move -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_clear_delete_move.dir/link.txt --verbose=1 -[ 78%] Linking CXX executable tiledb_array_write_sparse_4 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_4.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_1.dir/link.d CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -o tiledb_array_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 78%] Linking CXX executable tiledb_catching_errors -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_catching_errors.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_dense_array_api.dir/link.d CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -o test_dense_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 78%] Built target tiledb_array_write_dense_1 +[ 71%] Built target test_codec_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend -[ 78%] Built target test_dense_array_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend -[ 78%] Linking CXX executable tiledb_array_write_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_2.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -MF CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d -o CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_config.cc +[ 71%] Built target tiledb_array_read_sparse_filter_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend +[ 72%] Linking CXX executable test_codec +[ 72%] Built target tiledb_array_read_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec.dir/link.txt --verbose=1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_1.dir/link.d CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -o tiledb_array_update_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 78%] Built target tiledb_array_update_sparse_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 72%] Linking CXX executable tiledb_array_update_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -MF CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d -o CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_clear_delete_move.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_1.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 72%] Linking CXX executable tiledb_array_write_dense_sorted +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_sorted.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -MF CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d -o CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_config.cc +[ 72%] Linking CXX executable test_filter_api +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_filter_api.dir/link.txt --verbose=1 +[ 73%] Linking CXX executable tiledb_array_write_dense_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_1.dir/link.txt --verbose=1 +[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -MF CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d -o CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_delete.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -o tiledb_array_write_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o +[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -MF CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d -o CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_ls.cc +[ 74%] Linking CXX executable tiledb_array_write_sparse_2 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_2.dir/link.txt --verbose=1 +[ 75%] Linking CXX executable tiledb_array_write_sparse_3 +[ 75%] Linking CXX executable tiledb_array_write_sparse_4 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_3.dir/link.txt --verbose=1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_2.dir/link.d CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -o tiledb_array_update_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -MF CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d -o CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_ls.cc -[ 79%] Built target tiledb_array_write_dense_sorted +[ 75%] Built target tiledb_array_update_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" -[ 79%] Built target tiledb_array_update_dense_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" +[ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -MF CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d -o CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_ls_workspaces.cc +[ 76%] Linking CXX executable tiledb_clear_delete_move +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_clear_delete_move.dir/link.txt --verbose=1 +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /usr/include/catch2/internal/catch_stringref.hpp:16, + from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:13, + from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, + from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, + from /usr/include/catch2/catch_all.hpp:25, + from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/include/catch2/catch.h:39, + from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:39: +In function 'void* memcpy(void*, const void*, size_t)', + inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:184:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] + 29 | return __builtin___memcpy_chk (__dest, __src, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ + 30 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 + 181 | double j = 0.1, k = 0.2; + | ^ +In function 'void* memcpy(void*, const void*, size_t)', + inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:186:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] + 29 | return __builtin___memcpy_chk (__dest, __src, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ + 30 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 + 181 | double j = 0.1, k = 0.2; + | ^ +In function 'void* memcpy(void*, const void*, size_t)', + inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:191:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] + 29 | return __builtin___memcpy_chk (__dest, __src, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ + 30 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 + 181 | double j = 0.1, k = 0.2; + | ^ +In function 'void* memcpy(void*, const void*, size_t)', + inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:192:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] + 29 | return __builtin___memcpy_chk (__dest, __src, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ + 30 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 + 181 | double j = 0.1, k = 0.2; + | ^ +In function 'void* memcpy(void*, const void*, size_t)', + inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:196:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] + 29 | return __builtin___memcpy_chk (__dest, __src, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ + 30 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:10: note: source object 'j' of size 8 + 181 | double j = 0.1, k = 0.2; + | ^ +In function 'void* memcpy(void*, const void*, size_t)', + inlined from 'void CATCH2_INTERNAL_TEST_0()' at /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:198:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:33: warning: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' reading 16 bytes from a region of size 8 [-Wstringop-overread] + 29 | return __builtin___memcpy_chk (__dest, __src, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ + 30 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc: In function 'void CATCH2_INTERNAL_TEST_0()': +/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 + 181 | double j = 0.1, k = 0.2; + | ^ +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_1.dir/link.d CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -o tiledb_array_update_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 76%] Built target tiledb_array_update_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build -[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -MF CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d -o CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_ls_workspaces.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_2.dir/link.d CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -o tiledb_array_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -MF CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d -o CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_consolidate.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_2.dir/link.d CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -o tiledb_array_update_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 79%] Built target tiledb_array_write_dense_2 +[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -MF CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d -o CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_consolidate.cc +[ 76%] Built target tiledb_array_update_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -o tiledb_array_write_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 79%] Built target tiledb_array_update_sparse_2 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -MF CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d -o CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_create.cc +[ 76%] Built target tiledb_array_write_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" -[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -MF CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d -o CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_create.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_3.dir/link.d CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -o tiledb_array_write_sparse_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 76%] Linking CXX executable tiledb_config +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_config.dir/link.txt --verbose=1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -o tiledb_array_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -MF CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d -o CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_iterator.cc -[ 80%] Built target tiledb_array_write_sparse_1 -[ 80%] Built target tiledb_array_write_sparse_3 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build +[ 76%] Linking CXX executable tiledb_catching_errors make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_catching_errors.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o +[ 77%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -MF CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d -o CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_iterator.cc +[ 77%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -MF CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d -o 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'/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build +[ 77%] Built target tiledb_array_write_sparse_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -MF CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d -o CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_read.cc -[ 80%] Linking CXX executable tiledb_config -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_config.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_clear_delete_move.dir/link.d CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -o tiledb_clear_delete_move ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_4.dir/link.d CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -o tiledb_array_write_sparse_4 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" +[ 77%] Linking CXX executable test_uri +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_uri.dir/link.txt --verbose=1 +[ 78%] Linking CXX executable tiledb_ls +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls.dir/link.txt --verbose=1 +[ 78%] Built target tiledb_array_write_dense_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 80%] Built target tiledb_clear_delete_move +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend -[ 80%] Built target tiledb_array_write_sparse_4 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" +[ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_1.dir/link.d CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -o tiledb_array_update_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -MF CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d -o CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_write.cc -[ 81%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -MF CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d -o CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_read.cc +[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec.dir/link.d CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -o test_codec ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -MF CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d -o CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_update.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_catching_errors.dir/link.d CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -o tiledb_catching_errors ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 82%] Linking CXX executable tiledb_metadata_consolidate -[ 82%] Built target tiledb_catching_errors +[ 79%] Built target tiledb_array_update_sparse_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" +[ 79%] Built target test_codec +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_consolidate.dir/link.txt --verbose=1 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_1.dir/link.d CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -o tiledb_array_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 82%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o +[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -MF CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d -o CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_metadata_write.cc +[ 79%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -MF CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d -o CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples/src/tiledb_workspace_group_create.cc +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_3.dir/link.d CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -o tiledb_array_write_sparse_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 79%] Built target tiledb_array_write_dense_1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -o tiledb_array_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 83%] Linking CXX executable tiledb_ls -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls.dir/link.txt --verbose=1 -[ 83%] Built target tiledb_array_write_sparse_2 -[ 83%] Linking CXX executable tiledb_metadata_iterator -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_iterator.dir/link.txt --verbose=1 -[ 83%] Linking CXX executable tiledb_ls_workspaces -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls_workspaces.dir/link.txt --verbose=1 -[ 83%] Linking CXX executable tiledb_metadata_update -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_update.dir/link.txt --verbose=1 -[ 83%] Linking CXX executable tiledb_delete +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_filter_api.dir/link.d CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -o test_filter_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 79%] Built target tiledb_array_write_sparse_3 +[ 79%] Built target tiledb_array_write_sparse_2 +[ 79%] Linking CXX executable tiledb_delete cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_delete.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable tiledb_metadata_primitive -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_primitive.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable tiledb_metadata_create +[ 79%] Linking CXX executable tiledb_metadata_create cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_create.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable tiledb_metadata_read +[ 79%] Built target test_filter_api +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_4.dir/link.d CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -o tiledb_array_write_sparse_4 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 79%] Built target tiledb_array_write_sparse_4 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_clear_delete_move.dir/link.d CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -o tiledb_clear_delete_move ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 79%] Linking CXX executable tiledb_ls_workspaces +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls_workspaces.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_uri.dir/link.d CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -o test_uri ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 79%] Built target test_uri +[ 79%] Built target tiledb_clear_delete_move +[ 80%] Linking CXX executable tiledb_metadata_consolidate +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_consolidate.dir/link.txt --verbose=1 +[ 81%] Linking CXX executable tiledb_metadata_primitive +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_primitive.dir/link.txt --verbose=1 +[ 81%] Linking CXX executable tiledb_metadata_read cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_read.dir/link.txt --verbose=1 -[ 85%] Linking CXX executable test_tiledb_utils -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tiledb_utils.dir/link.txt --verbose=1 -[ 85%] Linking CXX executable tiledb_metadata_write -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_write.dir/link.txt --verbose=1 -[ 86%] Linking CXX executable tiledb_workspace_group_create +[ 81%] Linking CXX executable tiledb_metadata_iterator +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_iterator.dir/link.txt --verbose=1 +[ 81%] Linking CXX executable tiledb_metadata_update +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_update.dir/link.txt --verbose=1 +[ 82%] Linking CXX executable tiledb_workspace_group_create cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_workspace_group_create.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_catching_errors.dir/link.d CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -o tiledb_catching_errors ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_catching_errors +[ 82%] Linking CXX executable tiledb_metadata_write +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_write.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_delete.dir/link.d CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -o tiledb_delete ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_delete /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_config.dir/link.d CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -o tiledb_config ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_config /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls.dir/link.d CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -o tiledb_ls ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_ls +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_create.dir/link.d CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -o tiledb_metadata_create ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_metadata_create +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls_workspaces.dir/link.d CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -o tiledb_ls_workspaces ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target tiledb_config -[ 86%] Built target tiledb_ls +[ 82%] Built target tiledb_ls_workspaces +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_read.dir/link.d CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -o tiledb_metadata_read ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_metadata_read /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_iterator.dir/link.d CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -o tiledb_metadata_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target tiledb_metadata_iterator +[ 82%] Built target tiledb_metadata_iterator +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_primitive.dir/link.d CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -o tiledb_metadata_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_metadata_primitive +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_update.dir/link.d CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -o tiledb_metadata_update ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_consolidate.dir/link.d CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -o tiledb_metadata_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls_workspaces.dir/link.d CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -o tiledb_ls_workspaces ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -[ 86%] Built target tiledb_metadata_consolidate +[ 82%] Built target tiledb_metadata_update +[ 82%] Built target tiledb_metadata_consolidate +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_workspace_group_create.dir/link.d CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -o tiledb_workspace_group_create ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target tiledb_ls_workspaces -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_update.dir/link.d CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -o tiledb_metadata_update ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 82%] Built target tiledb_workspace_group_create +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_write.dir/link.d CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -o tiledb_metadata_write ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_metadata_write +[ 83%] Linking CXX executable test_tiledb_utils +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tiledb_utils.dir/link.txt --verbose=1 +[ 83%] Linking CXX executable test_utils +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_utils.dir/link.txt --verbose=1 +[ 84%] Linking CXX executable test_dense_array_api +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dense_array_api.dir/link.txt --verbose=1 +[ 85%] Linking CXX executable test_array_iterator +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_iterator.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_tiledb_utils.dir/link.d CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -o test_tiledb_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 85%] Built target test_tiledb_utils +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_utils.dir/link.d CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -o test_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 85%] Built target test_utils +[ 85%] Linking CXX executable test_storage_buffer +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_storage_buffer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_dense_array_api.dir/link.d CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -o test_dense_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 85%] Built target test_dense_array_api +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_iterator.dir/link.d CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -o test_array_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 85%] Built target test_array_iterator +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_storage_buffer.dir/link.d CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -o test_storage_buffer ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 85%] Built target test_storage_buffer +[ 86%] Linking CXX executable test_sparse_array_benchmark +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_benchmark.dir/link.txt --verbose=1 +[ 86%] Linking CXX executable test_array_schema_api +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema_api.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_benchmark.dir/link.d CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -o test_sparse_array_benchmark ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 86%] Built target test_sparse_array_benchmark +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema_api.dir/link.d CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -o test_array_schema_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target tiledb_metadata_update +[ 86%] Built target test_array_schema_api make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 86%] Linking CXX executable test_posixfs +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_posixfs.dir/link.txt --verbose=1 [ 86%] Built target GenomicsDB_library_object_files make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend @@ -5175,36 +5244,16 @@ make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Linking CXX static library libgenomicsdb.a -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_primitive.dir/link.d CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -o tiledb_metadata_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -P CMakeFiles/genomicsdb.dir/cmake_clean_target.cmake -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 86%] Linking CXX shared library libgenomicsdb.so cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledbgenomicsdb.dir/link.txt --verbose=1 -[ 86%] Built target tiledb_metadata_primitive +[ 86%] Linking CXX static library libgenomicsdb.a +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -P CMakeFiles/genomicsdb.dir/cmake_clean_target.cmake /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/tiledbgenomicsdb.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdb.so.1 -o libgenomicsdb.so.1.5.4 CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o 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CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_objecd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now 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../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -/usr/bin/ar qc libgenomicsdb.a CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets[ 86%] Built target tiledb_metadata_write -[ 86%] Built target tiledb_metadata_create -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_delete.dir/link.d CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -o tiledb_delete ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target tiledb_delete -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_read.dir/link.d CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -o tiledb_metadata_read ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so 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CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o 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/usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target tiledb_metadata_read -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_workspace_group_create.dir/link.d CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -o tiledb_workspace_group_create ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target tiledb_workspace_group_create -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_tiledb_utils.dir/link.d CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -o test_tiledb_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 86%] Built target test_tiledb_utils +[ 86%] Built target test_posixfs ct_files.dir/cpp/src/api/genomicsdb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core: /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_symlink_library libgenomicsdb.so.1.5.4 libgenomicsdb.so.1 libgenomicsdb.so -[ 86%] Linking CXX executable test_utils -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_utils.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 86%] Built target tiledbgenomicsdb make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend @@ -5213,19 +5262,31 @@ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 86%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d -o 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-I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBQuery.cc [ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc -[ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc -[ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o [ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBQuery.cc cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_jni_init.cc -[ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_utils.dir/link.d CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -o test_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 87%] Built target test_utils +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:29: +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api/tiledb.h:44, + from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api/tiledb_utils.h:39, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:25: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -5252,23 +5313,6 @@ In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:29: -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api/tiledb.h:44, - from /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api/tiledb_utils.h:39, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc:25: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 87%] Linking CXX executable test_storage_buffer -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_storage_buffer.dir/link.txt --verbose=1 -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/tiledb_loader.h:30, @@ -5289,137 +5333,164 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_storage_buffer.dir/link.d CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -o test_storage_buffer ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jlong Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniInitializeGenomicsDBImporterObject(JNIEnv*, jobject, jstring, jint)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:102:3: warning: control reaches end of non-void function [-Wreturn-type] + 102 | } + | ^ +/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jlong Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniSetupGenomicsDBLoader(JNIEnv*, jobject, jlong, jstring)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:159:3: warning: control reaches end of non-void function [-Wreturn-type] + 159 | } + | ^ +/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jboolean Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniImportBatch(JNIEnv*, jobject, jlong, jlongArray)': +/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:231:3: warning: control reaches end of non-void function [-Wreturn-type] + 231 | } + | ^ +[ 87%] Linking CXX executable test_expressions +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_expressions.dir/link.txt --verbose=1 +[ 87%] Linking CXX executable test_sparse_array_api +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_api.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_api.dir/link.d CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -o test_sparse_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 87%] Built target test_storage_buffer -[ 87%] Linking CXX executable test_posixfs -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_posixfs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_expressions.dir/link.d CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -o test_expressions ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 87%] Built target test_expressions +[ 87%] Built target test_sparse_array_api _mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o /usr/bin/ranlib libgenomicsdb.a make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 87%] Built target genomicsdb make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend +make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend +make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend +make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake "--color=" -make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake "--color=" +make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend +make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend +cd 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/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake "--color=" +[ 87%] Linking CXX shared library libgenomicsdbjni.so +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdbjni.dir/link.txt --verbose=1 +make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend -make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build -make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools 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-I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -MF CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o.d -o CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -c 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-I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o -MF CMakeFiles/ctests.dir/src/ctest_main.cc.o.d -o CMakeFiles/ctests.dir/src/ctest_main.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/ctest_main.cc [ 88%] Building CXX object 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/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o -MF CMakeFiles/ctests.dir/src/test_logger.cc.o.d -o CMakeFiles/ctests.dir/src/test_logger.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_logger.cc -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -MF CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d -o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc +[ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -MF CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d -o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_htslib_plugin.cc +[ 91%] Building CXX object example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o +[ 91%] Building CXX object tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o +[ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader 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-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -MF CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_gt_remapper.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o -MF CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d -o CMakeFiles/ctests.dir/src/test_query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_query_variants.cc +[ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o +[ 92%] Building CXX object tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.4/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -MF CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d -o 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/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcf_histogram.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_posixfs.dir/link.d CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -o test_posixfs ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 92%] Built target test_posixfs -make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make 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-DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -MF CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d -o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_genomicsdb_api.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -MF CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o.d -o CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_genomicsdb_demo.cc +[ 95%] Building CXX object example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -MF CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d -o CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_importer.cc +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o -MF CMakeFiles/ctests.dir/src/test_bgen.cc.o.d -o CMakeFiles/ctests.dir/src/test_bgen.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_bgen.cc +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/genomicsdbjni.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdbjni.so -o libgenomicsdbjni.so CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib libgenomicsdb.so.1.5.4 ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 92%] Building CXX object example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -MF CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_bcf_generator.cc -/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jlong Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniInitializeGenomicsDBImporterObject(JNIEnv*, jobject, jstring, jint)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:102:3: warning: control reaches end of non-void function [-Wreturn-type] - 102 | } - | ^ -/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jlong Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniSetupGenomicsDBLoader(JNIEnv*, jobject, jlong, jstring)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:159:3: warning: control reaches end of non-void function [-Wreturn-type] - 159 | } - | ^ -/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jboolean Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniImportBatch(JNIEnv*, jobject, jlong, jlongArray)': -/build/reproducible-path/genomicsdb-1.5.4/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:231:3: warning: control reaches end of non-void function [-Wreturn-type] - 231 | } - | ^ +[ 95%] Built target genomicsdbjni In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/tools/include/vcfdiff.h:31, - from /build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:25: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/tools/src/gt_mpi_gather.cc:30: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5430,8 +5501,7 @@ from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/tools/include/vcfdiff.h:26: + from /build/reproducible-path/genomicsdb-1.5.4/tools/src/gt_mpi_gather.cc:24: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -5439,7 +5509,9 @@ from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/tools/src/gt_mpi_gather.cc:30: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/tiledb_loader.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/tools/src/consolidate_genomicsdb_array.cc:29: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5450,7 +5522,7 @@ from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/genomicsdb-1.5.4/tools/src/gt_mpi_gather.cc:24: + from /build/reproducible-path/genomicsdb-1.5.4/tools/src/consolidate_genomicsdb_array.cc:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -5459,9 +5531,8 @@ from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_bcf_generator.cc:25: + from /build/reproducible-path/genomicsdb-1.5.4/tools/include/vcfdiff.h:31, + from /build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:25: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5473,7 +5544,7 @@ from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_bcf_generator.cc:24: + from /build/reproducible-path/genomicsdb-1.5.4/tools/include/vcfdiff.h:26: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -5499,6 +5570,29 @@ In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, + from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_bcf_generator.cc:25: +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/c++/14/bits/locale_classes.h:40, + from /usr/include/c++/14/bits/ios_base.h:41, + from /usr/include/c++/14/ios:44, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_bcf_generator.cc:24: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_multid_vector.cc:27: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] @@ -5514,15 +5608,24 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc: In constructor 'VCFDiffFile::VCFDiffFile(const std::string&, const std::string&)': -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:83:41: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 83 | std::string field_name = std::move(std::string(bcf_hdr_int2id(m_hdr, BCF_DT_ID, i))); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:83:41: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc: In member function 'void VCFDiffFile::compare_line(const bcf_hdr_t*, bcf1_t*)': -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:591:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 591 | auto gold_ID_set = std::move(get_ID_set(gold_line)); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_query_variants.cc:31: +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, + from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, + from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, + from /usr/include/catch2/catch_all.hpp:25, + from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_query_variants.cc:28: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -5533,11 +5636,6 @@ /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:591:33: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:592:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 592 | auto test_ID_set = std::move(get_ID_set(m_line)); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:592:33: note: remove 'std::move' call In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/14/string:47, from /usr/include/c++/14/bits/locale_classes.h:40, @@ -5551,6 +5649,38 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc: In constructor 'VCFDiffFile::VCFDiffFile(const std::string&, const std::string&)': +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:83:41: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 83 | std::string field_name = std::move(std::string(bcf_hdr_int2id(m_hdr, BCF_DT_ID, i))); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:83:41: note: remove 'std::move' call +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc: In member function 'void VCFDiffFile::compare_line(const bcf_hdr_t*, bcf1_t*)': +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:591:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 591 | auto gold_ID_set = std::move(get_ID_set(gold_line)); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:591:33: note: remove 'std::move' call +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:592:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 592 | auto test_ID_set = std::move(get_ID_set(m_line)); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.4/tools/src/vcfdiff.cc:592:33: note: remove 'std::move' call +In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc:31: +/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, + from /usr/include/c++/14/string:47, + from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, + from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, + from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, + from /usr/include/catch2/catch_all.hpp:25, + from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc:29: +/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here + 127 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -5575,15 +5705,14 @@ /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 92%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -MF CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d -o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/tiledb_loader.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/tools/src/consolidate_genomicsdb_array.cc:29: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/genomicsdb_importer.h:25, + from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_importer.cc:26: /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5594,170 +5723,77 @@ from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/genomicsdb-1.5.4/tools/src/consolidate_genomicsdb_array.cc:26: + from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_importer.cc:25: /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 93%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -MF CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d -o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_htslib_plugin.cc /build/reproducible-path/genomicsdb-1.5.4/tools/src/vcf2genomicsdb.cc: In function 'int main(int, char**)': /build/reproducible-path/genomicsdb-1.5.4/tools/src/vcf2genomicsdb.cc:165:45: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 165 | auto loader_json_config_file = std::move(std::string(argv[optind])); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.4/tools/src/vcf2genomicsdb.cc:165:45: note: remove 'std::move' call -[ 93%] Linking CXX executable test_sparse_array_api -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_api.dir/link.txt --verbose=1 -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc:31: -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, - from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, - from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, - from /usr/include/catch2/catch_all.hpp:25, - from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_columnar_gvcf_iterator.cc:29: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 93%] Linking CXX executable test_expressions -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_expressions.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_api.dir/link.d CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -o test_sparse_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 93%] Built target test_sparse_array_api -make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 94%] Building CXX object example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -MF CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d -o CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_importer.cc -[ 95%] Linking CXX executable test_genomicsdb_bcf_generator +[ 96%] Linking CXX executable test_genomicsdb_bcf_generator cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_bcf_generator.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_expressions.dir/link.d CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -o test_expressions ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 95%] Built target test_expressions -[ 95%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -MF CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d -o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_alleles_combiner.cc -[ 95%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -MF CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_gt_remapper.cc -[ 96%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o -MF CMakeFiles/ctests.dir/src/test_bgen.cc.o.d -o CMakeFiles/ctests.dir/src/test_bgen.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_bgen.cc -[ 96%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o -MF CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d -o CMakeFiles/ctests.dir/src/test_query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_query_variants.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_bcf_generator.dir/link.d CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -o test_genomicsdb_bcf_generator -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 96%] Built target test_genomicsdb_bcf_generator -[ 96%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.4/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -MF CMakeFiles/ctests.dir/src/test_mem_utils.cc.o.d -o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_mem_utils.cc [ 96%] Linking CXX executable gt_mpi_gather cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/gt_mpi_gather.dir/link.txt --verbose=1 -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/load_operators.h:27, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/tiledb_loader.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/loader/genomicsdb_importer.h:25, - from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_importer.cc:26: -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/c++/14/bits/locale_classes.h:40, - from /usr/include/c++/14/bits/ios_base.h:41, - from /usr/include/c++/14/ios:44, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.4/example/src/test_genomicsdb_importer.cc:25: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_query_variants.cc:31: -/build/reproducible-path/genomicsdb-1.5.4/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/14/bits/stl_iterator_base_funcs.h:66, - from /usr/include/c++/14/string:47, - from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, - from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, - from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, - from /usr/include/catch2/catch_all.hpp:25, - from /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/src/test_query_variants.cc:28: -/usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here - 127 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/gt_mpi_gather.dir/link.d CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -o gt_mpi_gather -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 96%] Built target gt_mpi_gather -[ 96%] Linking CXX shared library libgenomicsdbjni.so -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdbjni.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/genomicsdbjni.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdbjni.so -o libgenomicsdbjni.so CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib libgenomicsdb.so.1.5.4 ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 96%] Built target genomicsdbjni [ 96%] Linking CXX executable create_genomicsdb_workspace cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_genomicsdb_workspace.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/create_genomicsdb_workspace.dir/link.d CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -o create_genomicsdb_workspace -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 96%] Built target create_genomicsdb_workspace [ 97%] Linking CXX executable vcfdiff cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdiff.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/create_genomicsdb_workspace.dir/link.d CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -o create_genomicsdb_workspace -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 97%] Built target create_genomicsdb_workspace +[ 97%] Linking CXX executable vcf_histogram +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf_histogram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcfdiff.dir/link.d CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -o vcfdiff -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 97%] Built target vcfdiff +[ 97%] Linking CXX executable test_genomicsdb_demo +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_demo.dir/link.txt --verbose=1 [ 98%] Linking CXX executable consolidate_genomicsdb_array cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/consolidate_genomicsdb_array.dir/link.txt --verbose=1 -[ 98%] Linking CXX executable test_genomicsdb_demo -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_demo.dir/link.txt --verbose=1 -[ 98%] Linking CXX executable vcf_histogram -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf_histogram.dir/link.txt --verbose=1 [ 98%] Linking CXX executable api_tests cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/api_tests.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/consolidate_genomicsdb_array.dir/link.d CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -o consolidate_genomicsdb_array -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 98%] Built target consolidate_genomicsdb_array /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf_histogram.dir/link.d CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -o vcf_histogram -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 98%] Built target vcf_histogram +[ 98%] Linking CXX executable test_genomicsdb_importer +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_importer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_demo.dir/link.d CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -o test_genomicsdb_demo -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 98%] Built target test_genomicsdb_demo +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/consolidate_genomicsdb_array.dir/link.d CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -o consolidate_genomicsdb_array -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 98%] Built target consolidate_genomicsdb_array /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/api_tests.dir/link.d CMakeFiles/api_tests.dir/src/ctest_main.cc.o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -o api_tests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E tar xzf /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp/../inputs/test.tgz make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 98%] Built target api_tests +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_importer.dir/link.d CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -o test_genomicsdb_importer -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 98%] Built target test_genomicsdb_importer [ 99%] Linking CXX executable vcf2genomicsdb cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf2genomicsdb.dir/link.d CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -o vcf2genomicsdb -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 99%] Built target vcf2genomicsdb -[ 99%] Linking CXX executable test_genomicsdb_importer -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_importer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_importer.dir/link.d CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -o test_genomicsdb_importer -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 99%] Built target test_genomicsdb_importer [100%] Linking CXX executable ctests cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ctests.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/ctests.dir/link.d CMakeFiles/ctests.dir/src/ctest_main.cc.o CMakeFiles/ctests.dir/src/test_config.cc.o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o CMakeFiles/ctests.dir/src/test_pb.cc.o CMakeFiles/ctests.dir/src/test_logger.cc.o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o CMakeFiles/ctests.dir/src/test_bgen.cc.o CMakeFiles/ctests.dir/src/test_query_variants.cc.o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -o ctests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[100%] Built target ctests [100%] Linking CXX executable vcf2genomicsdb_init cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb_init.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf2genomicsdb_init.dir/link.d CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o -o vcf2genomicsdb_init -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [100%] Built target vcf2genomicsdb_init -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/ctests.dir/link.d CMakeFiles/ctests.dir/src/ctest_main.cc.o CMakeFiles/ctests.dir/src/test_config.cc.o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o CMakeFiles/ctests.dir/src/test_pb.cc.o CMakeFiles/ctests.dir/src/test_logger.cc.o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o CMakeFiles/ctests.dir/src/test_bgen.cc.o CMakeFiles/ctests.dir/src/test_query_variants.cc.o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -o ctests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[100%] Built target ctests make[3]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' @@ -5944,18 +5980,18 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 35.982 s -[INFO] Finished at: 2025-02-17T12:44:13-12:00 +[INFO] Total time: 17.219 s +[INFO] Finished at: 2026-03-23T21:21:14+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4' jh_build -O--buildsystem=cmake debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4' dh_auto_test -a || true - cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 + cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j20 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu @@ -6086,7 +6122,19 @@ 20: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests "-d" "yes" 20: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp 20: Test timeout computed to be: 10000000 -1: Randomness seeded to: 2902220847 +test 21 + Start 21: api_tests + +21: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/api_tests "-d" "yes" +21: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp +21: Test timeout computed to be: 10000000 +test 22 + Start 22: tools_tests + +22: Test command: /build/reproducible-path/genomicsdb-1.5.4/tests/test_tools.sh "/build/reproducible-path/genomicsdb-1.5.4/tests/inputs/vcfs" "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools" "1" +22: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools +22: Test timeout computed to be: 10000000 +1: Randomness seeded to: 1920341216 1: [TileDB::ArraySchema] Error: Cannot set attributes; No attributes given. 1: [TileDB::ArraySchema] Error: Cannot set attributes; The number of attributes must be positive. 1: [TileDB::ArraySchema] Error: Cannot set attributes; Duplicate attribute names. @@ -6253,23 +6301,23 @@ 2: Usage: test_print_array_schema /path/to/TileDBArray 3: No arguments specified 3: Usage: test_print_book_keeping /path/to/TileDBArray/ -4: Randomness seeded to: 1953515308 +4: Randomness seeded to: 474502585 4: =============================================================================== 4: test cases: 1 | 1 passed 4: assertions: - none - 4: -6: Randomness seeded to: 2361008490 +6: Randomness seeded to: 1555548835 6: =============================================================================== 6: All tests passed (335 assertions in 13 test cases) 6: -9: Randomness seeded to: 2548492300 -9: [TileDB::utils] Error: (set_working_dir) Failed to set_working_dir as /tmp/TileDBTestmcFMkC/WORKSPACE.nonexistent does not exist -9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTestgVJlw1/WORKSPACE errno=2(No such file or directory) -9: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=/tmp/TileDBTestgVJlw1/WORKSPACE errno=2(No such file or directory) -9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTestTwwhxD/WORKSPACE errno=2(No such file or directory) -9: 7e820c3ee657b1a27a56a7be9d202a7a7e820c3ee657b1a27a56a7be9d202a7a[TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTest4vmAb3/test_file -9: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTest4vmAb3/test_file -10: Randomness seeded to: 4092695053 +9: Randomness seeded to: 3393154997 +9: [TileDB::utils] Error: (set_working_dir) Failed to set_working_dir as /tmp/TileDBTestCFtDvE/WORKSPACE.nonexistent does not exist +9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTest1h7iTj/WORKSPACE errno=2(No such file or directory) +9: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=/tmp/TileDBTest1h7iTj/WORKSPACE errno=2(No such file or directory) +9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTest4NY9KN/WORKSPACE errno=2(No such file or directory) +9: 7e820c3ee657b1a27a56a7be9d202a7a7e820c3ee657b1a27a56a7be9d202a7a[TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTest3P70PQ/test_file +9: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTest3P70PQ/test_file +10: Randomness seeded to: 3623449232 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR @@ -6280,7 +6328,7 @@ 10: =============================================================================== 10: All tests passed (31 assertions in 5 test cases) 10: -11: Randomness seeded to: 3238367776 +11: Randomness seeded to: 3604793304 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. @@ -6312,7 +6360,7 @@ 11: =============================================================================== 11: All tests passed (192 assertions in 2 test cases) 11: -12: Randomness seeded to: 3439439312 +12: Randomness seeded to: 1639268741 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: @@ -6363,13 +6411,17 @@ 12: =============================================================================== 12: All tests passed (3334 assertions in 83 test cases) 12: -14: Randomness seeded to: 2741551466 -14: Mon Feb 17 12:44:18 2025 Memory stats Tracking memory usage START size=6MB resident=2MB share=1MB text=496KB lib=0 data=536KB dt=0 -15: Randomness seeded to: 1200488902 +13: Randomness seeded to: 1712275728 +13: =============================================================================== +13: All tests passed (288 assertions in 3 test cases) +13: +14: Randomness seeded to: 1120527236 +14: Mon Mar 23 21:21:15 2026 Memory stats Tracking memory usage START size=6MB resident=3MB share=3MB text=496KB lib=0 data=536KB dt=0 +15: Randomness seeded to: 2319834971 15: =============================================================================== 15: All tests passed (113 assertions in 1 test case) 15: -16: Randomness seeded to: 3089832341 +16: Randomness seeded to: 4069039328 16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; invalid input buffer format 16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; output buffer overflow 16: [TileDB::utils] Error: (RLE_compress_coords_row) Failed compressing coordinates with RLE; invalid buffer format @@ -6383,29 +6435,18 @@ 16: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/non-existent-dir/file errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=/non-existent-dir/dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=/non-existent-dir/old errno=2(No such file or directory) -16: =============================================================================== -16: All tests passed (86 assertions in 6 test cases) -16: -17: Randomness seeded to: 3710162118 -17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory; Directory already exists path=/tmp/TileDBTestc6a9K8/test_posixfs_dirdir +17: Randomness seeded to: 2356379175 +17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory; Directory already exists path=/tmp/TileDBTestwc7ZLd/test_posixfs_dirdir 17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/foo errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestc6a9K8/test_posixfs_dirdir errno=21(Is a directory) -17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestc6a9K8/test_posixfs_dirdir errno=21(Is a directory) +17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestwc7ZLd/test_posixfs_dirdir errno=21(Is a directory) +17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestwc7ZLd/test_posixfs_dirdir errno=21(Is a directory) 17: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-dir errno=2(No such file or directory) 17: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=non-existent-dir errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=non-existent-dir errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=non-existent-dir errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/tmp/TileDBTestk6WkUI/test_posixfs_dirfile/foo1 errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTest9xouaI/test_posixfs_dirread_write/foo -17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTest9xouaI/test_posixfs_dirread_write/foo -17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTest9xouaI/test_posixfs_dirread_write/foo -17: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) -18: Randomness seeded to: 3414975434 -18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestVTS2vS/test-file -18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/tmp/TileDBTestVTS2vS/test-file-non-existent errno=2(No such file or directory) -18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestVTS2vS/test-file -18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestVTS2vS/test-file +18: Randomness seeded to: 1467582222 +18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestzmActc/test-file +18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/tmp/TileDBTestzmActc/test-file-non-existent errno=2(No such file or directory) +18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestzmActc/test-file +18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestzmActc/test-file 18: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (write_buffer) Cannot write bytes path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=13(Permission denied) @@ -6420,61 +6461,31 @@ 18: [TileDB::StorageBuffer] Error: (write_buffer) Compression type=1000 not supported in StorageBuffer 18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (read_buffer) Compression type=1000 for read_buffer not supported for CompressedStorageBuffer -18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestSwSGhE/compressed_foo - 1/22 Test #1: test_array_schema ................ Passed 0.47 sec - 2/22 Test #2: test_print_array_schema .......... Passed 0.45 sec - 3/22 Test #3: test_print_book_keeping .......... Passed 0.44 sec - 4/22 Test #4: test_sparse_array_benchmark ...... Passed 0.43 sec - 5/22 Test #6: test_array_schema_api ............ Passed 0.42 sec - 6/22 Test #10: test_codec ....................... Passed 0.33 sec - 7/22 Test #11: test_codec_filter ................ Passed 0.31 sec - 8/22 Test #12: test_expressions ................. Passed 0.29 sec - 9/22 Test #15: test_uri ......................... Passed 0.23 sec -10/22 Test #16: test_utils ....................... Passed 0.20 sec +18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTest2Hue6i/compressed_foo 19: Example 1: Running ./tiledb_workspace_group_create... -test 21 - Start 21: api_tests - -21: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/api_tests "-d" "yes" -21: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp -21: Test timeout computed to be: 10000000 -test 22 - Start 22: tools_tests - -22: Test command: /build/reproducible-path/genomicsdb-1.5.4/tests/test_tools.sh "/build/reproducible-path/genomicsdb-1.5.4/tests/inputs/vcfs" "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools" "1" -22: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools -22: Test timeout computed to be: 10000000 -17: [TileDB::FileSystem] Error: (read_from_file) Cannot open simultaneously for reads/writes path=test_posixfs_dir_locking/foo -17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_sync -5: Randomness seeded to: 2864289856 -5: [TileDB::Expression] Error: (evaluate_cell) NYI: Filter expressions do not handle empty values yet 19: Example 1: Done running ./tiledb_workspace_group_create -17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_no_close -17: =============================================================================== -17: All tests passed (258 assertions in 11 test cases) -17: -5: =============================================================================== -5: All tests passed (527 assertions in 6 test cases) -5: -21: Randomness seeded to: 3219718727 -21: 0.002 s: utils -21: 0.000 s: api empty_args -11/22 Test #5: test_array_iterator .............. Passed 0.52 sec -12/22 Test #17: test_posixfs ..................... Passed 0.28 sec + 1/22 Test #1: test_array_schema ................ Passed 0.08 sec + 2/22 Test #2: test_print_array_schema .......... Passed 0.08 sec + 3/22 Test #3: test_print_book_keeping .......... Passed 0.08 sec + 4/22 Test #4: test_sparse_array_benchmark ...... Passed 0.07 sec + 5/22 Test #6: test_array_schema_api ............ Passed 0.07 sec + 6/22 Test #10: test_codec ....................... Passed 0.06 sec + 7/22 Test #11: test_codec_filter ................ Passed 0.06 sec + 8/22 Test #12: test_expressions ................. Passed 0.06 sec + 9/22 Test #13: test_filter_api .................. Passed 0.06 sec +10/22 Test #15: test_uri ......................... Passed 0.06 sec 19: Example 2: Running ./tiledb_ls_workspaces... -13: Randomness seeded to: 3084105955 -13: =============================================================================== -13: All tests passed (288 assertions in 3 test cases) -13: -13/22 Test #13: test_filter_api .................. Passed 0.41 sec 19: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=&& errno=2(No such file or directory) +21: Randomness seeded to: 2151019503 +21: 0.000 s: utils +21: 0.000 s: api empty_args 19: Example 2: Done running ./tiledb_ls_workspaces 19: Example 3: Running ./tiledb_array_create_dense... 19: Example 3: Done running ./tiledb_array_create_dense 19: Example 4: Running ./tiledb_array_create_sparse... 19: Example 4: Done running ./tiledb_array_create_sparse 19: Example 5: Running ./tiledb_array_primitive... -21: 0.304 s: api query_variants direct DP +21: 0.025 s: api query_variants direct DP 19: Array name: my_workspace/dense_arrays/my_array_A 19: Attributes: a1 a2 a3 19: The array is dense @@ -6483,171 +6494,39 @@ 19: The array is sparse 19: Example 5: Done running ./tiledb_array_primitive 19: Example 6: Running ./tiledb_array_write_dense_1... -20: 12:44:18.994 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 12:44:18.994 WARN NativeGenomicsDB - pid=990420 tid=990420 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 12:44:18.994 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -20: Randomness seeded to: 187703255 -20: 0.003 s: Check loader configuration with json file -20: 12:44:18.995 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 12:44:18.995 WARN NativeGenomicsDB - pid=990420 tid=990420 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 12:44:18.995 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -20: 0.001 s: Check configuration with json file -20: 12:44:18.996 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 12:44:18.996 WARN NativeGenomicsDB - pid=990420 tid=990420 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 12:44:19.017 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -20: 0.022 s: Check configuration with json file and shared posifs optim -20: 12:44:19.018 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 12:44:19.018 WARN NativeGenomicsDB - pid=990420 tid=990420 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 12:44:19.019 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -20: 0.001 s: Compare configuration with json file and string -20: 0.000 s: genotype_ordering haploid_5_alleles -20: 0.000 s: genotype_ordering diploid_2_alleles -20: 0.000 s: genotype_ordering diploid_3_alleles -20: 0.000 s: genotype_ordering diploid_4_alleles -20: 0.000 s: genotype_ordering triploid_2_alleles -20: 0.000 s: genotype_ordering triploid_3_alleles -20: 0.000 s: genotype_ordering triploid_4_alleles -20: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles -20: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles_without_NON_REF -20: 0.000 s: multid_vector 2D_test -20: 0.000 s: multid_vector 3D_test -20: 0.000 s: multid_vector 2D_test_with_missing_values -20: 0.000 s: multid_vector 2D_float_test -20: 0.000 s: multid_vector 2D_tuple_test -20: 0.000 s: pb_query_config_test -20: 0.019 s: pb_vid_mapping_test -20: 12:44:19.039 INFO NativeGenomicsDB - pid=990420 tid=990420 Contig/chromosome 2 begins at TileDB column 249250601 and intersects with contig/chromosome 1 that spans columns [0, 249250620] -20: 0.001 s: pb_overlapping_vid_mapping_test -20: 12:44:19.040 INFO NativeGenomicsDB - pid=990420 tid=990420 This is a test -20: 12:44:19.040 WARN NativeGenomicsDB - pid=990420 tid=990420 This is a test -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 This is a test -20: 12:44:19.040 DEBUG NativeGenomicsDB - pid=990420 tid=990420 This is a test -20: This is a test -20: This is a test -20: This is a test -20: This is a test -20: This is a once_only test -20: Trying format Hello1 Hello2 -20: 0.000 s: test logger -20: 12:44:19.040 INFO NativeGenomicsDB - pid=990420 tid=990420 i=1 str=This is a test -20: 12:44:19.040 WARN NativeGenomicsDB - pid=990420 tid=990420 i=2 str=This is a test -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 i=3 str=This is a test -20: 12:44:19.040 DEBUG NativeGenomicsDB - pid=990420 tid=990420 i=4 str=This is a test -20: 12:44:19.040 INFO NativeGenomicsDB - pid=990420 tid=990420 i=6 str=This is a once_only test -20: 12:44:19.040 WARN NativeGenomicsDB - pid=990420 tid=990420 i=7 str=This is a once_only test -20: 0.000 s: test logger format -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 i=1 str=This is a test -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 Test Exception -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 Test Exception -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 Test Exception -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 Native Stack Trace: -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x559dfd12e0b2] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x98742) [0x559dfd11e742] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x559dfd2dec98] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x559dfd2df7b8] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x559dfd2dfc30] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x559dfd2b2943] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x559dfd2b2cac] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x559dfd0f4a32] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fa3d362cd68] -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 Test Exception -20: 12:44:19.040 ERROR NativeGenomicsDB - pid=990420 tid=990420 Native Stack Trace: -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x559dfd12e0b2] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x9876f) [0x559dfd11e76f] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x559dfd2dec98] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x559dfd2df7b8] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x559dfd2dfc30] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x559dfd2b2943] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x559dfd2b2cac] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x559dfd0f4a32] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fa3d362cd68] -20: 0.001 s: test logger exceptions -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x559dfd12e0b2] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x9bc5f) [0x559dfd121c5f] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x559dfd2dec98] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x559dfd2df7b8] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x559dfd2dfc30] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x559dfd2b2943] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x559dfd2b2cac] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x559dfd0f4a32] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fa3d362cd68] -21: 0.117 s: api query_variants direct DP with huge row range -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x559dfd12e0b2] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x9bc2b) [0x559dfd121c2b] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x559dfd2dec98] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x559dfd2df7b8] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x559dfd2dfc30] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x559dfd2b2943] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x559dfd2b2cac] -20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x559dfd0f4a32] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fa3d362cd68] -20: This is a test -20: 0.009 s: test explicit logger -20: 12:44:19.050 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 12:44:19.050 WARN NativeGenomicsDB - pid=990420 tid=990420 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 12:44:19.050 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -19: Example 6: Done running ./tiledb_array_write_dense_1 -19: Example 7: Running ./tiledb_array_write_sparse_1... -21: 0.196 s: api query_variants direct DP with huge disjoint row ranges -19: Example 7: Done running ./tiledb_array_write_sparse_1 -20: 0.234 s: gvcf iterator -20: 12:44:19.284 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 12:44:19.284 WARN NativeGenomicsDB - pid=990420 tid=990420 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 12:44:19.284 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -14: Mon Feb 17 12:44:19 2025 Memory stats Tracking memory usage END size=6MB resident=2MB share=1MB text=496KB lib=0 data=536KB dt=0 -14: =============================================================================== -14: test cases: 1 | 1 passed -14: assertions: - none - -14: -14/22 Test #14: test_mem_utils ................... Passed 1.04 sec -20: 0.137 s: columnar_gvcf_iterator_test -20: 12:44:19.442 ERROR NativeGenomicsDB - pid=990420 tid=990420 hts_plugin could not find /tmp/GenomicsDBRePfcm -20: [TileDB] Error: No TileDB support for URL=dfdfd://ddd. -20: 12:44:19.442 ERROR NativeGenomicsDB - pid=990420 tid=990420 htslib_plugin could not open dfdfd://ddd -20: No TileDB support for URL=dfdfd://ddd -20: 12:44:19.442 ERROR NativeGenomicsDB - pid=990420 tid=990420 hts_plugin could not find /tmp/GenomicsDBRePfcm/foo -20: 12:44:19.442 ERROR NativeGenomicsDB - pid=990420 tid=990420 hts_plugin could not find /tmp/GenomicsDBRePfcm/foo -20: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) -20: 12:44:19.442 ERROR NativeGenomicsDB - pid=990420 tid=990420 hts_plugin write /dfdfd/dfdfd/non-existent-file error [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) -20: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) -20: 12:44:19.442 ERROR NativeGenomicsDB - pid=990420 tid=990420 hts_plugin read non-existent-file error [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) -20: 0.001 s: test htslib plugin -20: 0.000 s: alleles_combiner -20: 0.000 s: gt_remapper -21: 0.385 s: api query_variants direct DP with range composed of multiple points -21: 0.222 s: api query_variants direct DP with range composed of overlapping ranges -21: 12:44:19.911 ERROR NativeGenomicsDB - pid=990454 tid=990454 Query interval 0:-100-1 is out of bounds -21: 0.062 s: api query_variants direct DP with invalid row range -21: 0.300 s: api query_variants direct DP and GT -21: 0.214 s: api query_variants direct DP and GT with PP -21: 12:44:20.453 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:20.453 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:20.454 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:20.540 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:20.540 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:20.553 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:20.629 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:20.629 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:20.630 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.191 s: api query_variants with json -21: 12:44:20.631 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:20.631 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:20.631 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.010 s: api query_variants direct DP with huge row range +21: 0.010 s: api query_variants direct DP with huge disjoint row ranges +21: 0.014 s: api query_variants direct DP with range composed of multiple points +21: 0.015 s: api query_variants direct DP with range composed of overlapping ranges +21: 21:21:15.948 ERROR NativeGenomicsDB - pid=2641993 tid=2641993 Query interval 0:-100-1 is out of bounds +21: 0.007 s: api query_variants direct DP with invalid row range +21: 0.023 s: api query_variants direct DP and GT +21: 0.020 s: api query_variants direct DP and GT with PP +21: 21:21:15.993 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:15.993 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:15.994 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.003 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.003 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.004 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.013 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.013 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.014 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.022 s: api query_variants with json +21: 21:21:16.014 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.014 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.015 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/ws/t0_1_2/.__consolidation_lock -21: 12:44:20.695 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:20.695 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:20.695 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:20.780 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:20.780 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:20.780 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.151 s: api query variants with json string -21: 12:44:20.809 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:20.810 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:20.810 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.096 s: api query variants with enabled shared posixfs optimizations -9: =============================================================================== -9: All tests passed (10488234 assertions in 9 test cases) -9: +21: 21:21:16.024 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.024 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.025 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.034 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.034 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.035 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.021 s: api query variants with json string +21: 21:21:16.036 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.036 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.036 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.010 s: api query variants with enabled shared posixfs optimizations 21: ---------------- 21: Interval:[0,9223372036854775806] 21: @@ -6676,7 +6555,6 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 -15/22 Test #9: test_tiledb_utils ................ Passed 2.75 sec 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6705,7 +6583,7 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 -21: 0.213 s: api query_variant_calls direct +21: 0.026 s: api query_variant_calls direct 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6734,7 +6612,7 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 0.180 s: api query_variant_calls direct DP and GT +21: 0.025 s: api query_variant_calls direct DP and GT 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6763,10 +6641,112 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 0.134 s: api query_variant_calls direct DP and GT with PP -21: 12:44:21.406 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.406 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.406 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 21:21:16.118 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 21:21:16.118 WARN NativeGenomicsDB - pid=2641962 tid=2641962 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 21:21:16.119 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: Randomness seeded to: 47410018 +20: 0.003 s: Check loader configuration with json file +20: 21:21:16.119 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 21:21:16.119 WARN NativeGenomicsDB - pid=2641962 tid=2641962 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 21:21:16.120 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 0.001 s: Check configuration with json file +20: 21:21:16.121 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 21:21:16.121 WARN NativeGenomicsDB - pid=2641962 tid=2641962 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 21:21:16.121 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 0.001 s: Check configuration with json file and shared posifs optim +20: 21:21:16.122 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 21:21:16.122 WARN NativeGenomicsDB - pid=2641962 tid=2641962 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 21:21:16.122 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.026 s: api query_variant_calls direct DP and GT with PP +21: 21:21:16.123 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.123 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 0.001 s: Compare configuration with json file and string +20: 0.000 s: genotype_ordering haploid_5_alleles +20: 0.000 s: genotype_ordering diploid_2_alleles +20: 0.000 s: genotype_ordering diploid_3_alleles +20: 0.000 s: genotype_ordering diploid_4_alleles +20: 0.000 s: genotype_ordering triploid_2_alleles +20: 0.000 s: genotype_ordering triploid_3_alleles +20: 0.000 s: genotype_ordering triploid_4_alleles +20: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles +20: 0.000 s: genotype_ordering triploid_4_alleles_reordered_alleles_without_NON_REF +20: 0.000 s: multid_vector 2D_test +20: 0.000 s: multid_vector 3D_test +20: 0.000 s: multid_vector 2D_test_with_missing_values +20: 0.000 s: multid_vector 2D_float_test +20: 0.000 s: multid_vector 2D_tuple_test +20: 0.000 s: pb_query_config_test +21: 21:21:16.123 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 0.001 s: pb_vid_mapping_test +20: 21:21:16.125 INFO NativeGenomicsDB - pid=2641962 tid=2641962 Contig/chromosome 2 begins at TileDB column 249250601 and intersects with contig/chromosome 1 that spans columns [0, 249250620] +20: 0.000 s: pb_overlapping_vid_mapping_test +20: 21:21:16.125 INFO NativeGenomicsDB - pid=2641962 tid=2641962 This is a test +20: 21:21:16.125 WARN NativeGenomicsDB - pid=2641962 tid=2641962 This is a test +20: 21:21:16.125 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 This is a test +20: 21:21:16.125 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 This is a test +20: This is a test +20: This is a test +20: This is a test +20: This is a test +20: This is a once_only test +20: Trying format Hello1 Hello2 +20: 0.000 s: test logger +20: 21:21:16.125 INFO NativeGenomicsDB - pid=2641962 tid=2641962 i=1 str=This is a test +20: 21:21:16.125 WARN NativeGenomicsDB - pid=2641962 tid=2641962 i=2 str=This is a test +20: 21:21:16.125 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 i=3 str=This is a test +20: 21:21:16.125 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 i=4 str=This is a test +20: 21:21:16.125 INFO NativeGenomicsDB - pid=2641962 tid=2641962 i=6 str=This is a once_only test +20: 21:21:16.125 WARN NativeGenomicsDB - pid=2641962 tid=2641962 i=7 str=This is a once_only test +20: 0.000 s: test logger format +20: 21:21:16.125 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 i=1 str=This is a test +20: 21:21:16.125 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Test Exception +20: 21:21:16.125 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Test Exception +20: 21:21:16.125 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Test Exception +20: 21:21:16.126 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Native Stack Trace: +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x5584e7efe0b2] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x98742) [0x5584e7eee742] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x5584e80aec98] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x5584e80af7b8] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x5584e80afc30] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x5584e8082943] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x5584e8082cac] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x5584e7ec4a32] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fb2ed233d68] +20: 21:21:16.126 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Test Exception +20: 21:21:16.126 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Native Stack Trace: +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x5584e7efe0b2] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x9876f) [0x5584e7eee76f] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x5584e80aec98] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x5584e80af7b8] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x5584e80afc30] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x5584e8082943] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x5584e8082cac] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x5584e7ec4a32] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fb2ed233d68] +20: 0.000 s: test logger exceptions +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x5584e7efe0b2] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x9bc5f) [0x5584e7ef1c5f] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x5584e80aec98] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x5584e80af7b8] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x5584e80afc30] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x5584e8082943] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x5584e8082cac] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x5584e7ec4a32] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fb2ed233d68] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa80b2) [0x5584e7efe0b2] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x9bc2b) [0x5584e7ef1c2b] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x258c98) [0x5584e80aec98] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x2597b8) [0x5584e80af7b8] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259c30) [0x5584e80afc30] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c943) [0x5584e8082943] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22ccac) [0x5584e8082cac] +20: /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x6ea32) [0x5584e7ec4a32] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29d68) [0x7fb2ed233d68] +20: This is a test +20: 0.000 s: test explicit logger +20: 21:21:16.126 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 21:21:16.126 WARN NativeGenomicsDB - pid=2641962 tid=2641962 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 21:21:16.127 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6795,20 +6775,35 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 -21: 12:44:21.440 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.440 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.445 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.475 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.475 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.475 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.070 s: api query_variant_calls with json -21: 12:44:21.476 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.476 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.476 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.477 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.477 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.477 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.477 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.135 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.135 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.135 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 0.016 s: gvcf iterator +20: 21:21:16.142 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 21:21:16.142 WARN NativeGenomicsDB - pid=2641962 tid=2641962 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 21:21:16.142 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.142 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.142 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.143 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.021 s: api query_variant_calls with json +21: 21:21:16.143 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.143 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.144 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.145 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.145 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.145 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.145 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +20: 0.009 s: columnar_gvcf_iterator_test +20: 21:21:16.151 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 hts_plugin could not find /tmp/GenomicsDBAQt084 +20: [TileDB] Error: No TileDB support for URL=dfdfd://ddd. +20: 21:21:16.151 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 htslib_plugin could not open dfdfd://ddd +20: No TileDB support for URL=dfdfd://ddd +20: 21:21:16.151 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 hts_plugin could not find /tmp/GenomicsDBAQt084/foo +20: 21:21:16.151 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 hts_plugin could not find /tmp/GenomicsDBAQt084/foo +20: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) +20: 21:21:16.151 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 hts_plugin write /dfdfd/dfdfd/non-existent-file error [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) +20: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) +20: 21:21:16.151 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 hts_plugin read non-existent-file error [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6837,13 +6832,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.512 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.512 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.512 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.521 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.521 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.521 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.521 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.156 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.157 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.157 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.157 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.158 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.158 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.158 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6872,22 +6867,27 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.557 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.557 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.558 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.558 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.558 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.559 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.559 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.029 s: Try query with contig intervals instead of tiledb column intervals -21: 0.110 s: api query_variant_calls with protobuf -21: 12:44:21.586 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.586 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.587 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.588 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.588 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.588 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.588 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.168 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.168 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.169 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.169 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.169 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.170 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.170 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.009 s: Try query with contig intervals instead of tiledb column intervals +21: 0.034 s: api query_variant_calls with protobuf +21: 21:21:16.177 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.177 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.177 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.178 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.178 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.178 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.178 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +17: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=non-existent-dir errno=2(No such file or directory) +20: 0.031 s: test htslib plugin +20: 0.000 s: alleles_combiner +20: 0.000 s: gt_remapper +17: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=non-existent-dir errno=2(No such file or directory) 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6916,13 +6916,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.613 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.613 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.613 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.614 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.614 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.614 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.614 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.189 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.189 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.189 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.190 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.190 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.190 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.190 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6951,22 +6951,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.630 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.631 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.631 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.632 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.632 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.632 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.632 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.012 s: Try query with a filter -21: 0.056 s: api query_variant_calls with protobuf -21: 12:44:21.642 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.642 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.643 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.643 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.643 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.644 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.644 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.201 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.201 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.201 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.202 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.202 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.202 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.202 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.009 s: Try query with a filter +21: 0.033 s: api query_variant_calls with protobuf +21: 21:21:16.210 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.210 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.210 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.211 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.211 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.211 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.211 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6995,13 +6995,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.660 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.660 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.660 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.661 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.661 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.662 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.662 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.222 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.222 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.222 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.223 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.223 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.223 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.223 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7030,22 +7030,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.678 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.678 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.679 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.679 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.679 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.680 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.680 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.011 s: Try query with a filter and workspace with GT ploidy -21: 0.047 s: api query_variant_calls with protobuf -21: 12:44:21.690 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.690 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.690 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.691 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.691 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.691 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.691 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.233 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.233 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.234 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.234 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.234 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.234 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.235 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.008 s: Try query with a filter and workspace with GT ploidy +21: 0.032 s: api query_variant_calls with protobuf +21: 21:21:16.241 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.241 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.242 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.242 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.242 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.243 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.243 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7074,13 +7074,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.708 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.708 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.708 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.709 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.709 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.709 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.709 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.253 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.253 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.253 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.254 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.254 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.254 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.254 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7109,22 +7109,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.725 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.725 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.726 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.726 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.726 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.727 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.727 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.013 s: Try query with a filter and a small segment size to force TileDB buffers overflow -21: 0.049 s: api query_variant_calls with protobuf -21: 12:44:21.739 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.739 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.739 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.740 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.740 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.740 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.740 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.264 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.264 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.265 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.265 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.265 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.266 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.266 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.009 s: Try query with a filter and a small segment size to force TileDB buffers overflow +21: 0.032 s: api query_variant_calls with protobuf +21: 21:21:16.273 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.273 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.274 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.274 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.274 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.275 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.275 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7153,13 +7153,17 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.757 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.757 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.758 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.758 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.758 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.759 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.759 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.285 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.285 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.285 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.286 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.286 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.286 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.286 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +16: =============================================================================== +16: All tests passed (86 assertions in 6 test cases) +16: +11/22 Test #16: test_utils ....................... Passed 0.48 sec 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7188,22 +7192,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.776 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.776 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.776 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.777 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.777 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.777 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.777 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.011 s: Try query with POS and ROW with no match -21: 0.048 s: api query_variant_calls with protobuf -21: 12:44:21.787 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.787 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.787 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.788 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.788 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.788 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.788 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.296 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.296 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.297 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.297 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.297 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.297 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.297 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.008 s: Try query with POS and ROW with no match +21: 0.032 s: api query_variant_calls with protobuf +21: 21:21:16.305 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.305 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.305 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.305 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.305 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.306 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.306 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7232,13 +7236,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.806 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.806 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.806 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.807 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.807 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.807 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.807 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.315 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.315 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.316 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.316 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.316 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.316 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.316 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7267,22 +7271,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.823 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.823 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.824 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.824 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.824 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.825 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.825 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.012 s: Try query with POS and ROW -21: 0.048 s: api query_variant_calls with protobuf -21: 12:44:21.836 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.836 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.836 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.838 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.838 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.838 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.838 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.326 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.326 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.326 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.327 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.327 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.327 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.327 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.008 s: Try query with POS and ROW +21: 0.029 s: api query_variant_calls with protobuf +21: 21:21:16.334 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.334 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.334 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.335 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.335 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.335 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.335 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7311,13 +7315,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.857 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.857 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.858 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.858 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.858 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.859 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.859 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.345 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.345 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.345 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.346 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.346 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.346 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.346 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7346,22 +7350,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.876 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.876 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.877 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.877 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.877 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.878 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.878 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.012 s: Try query with ISHOMREF -21: 0.053 s: api query_variant_calls with protobuf -21: 12:44:21.889 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.889 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.889 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.890 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.890 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.890 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.890 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.355 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.355 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.355 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.356 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.356 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.356 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.356 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.008 s: Try query with ISHOMREF +21: 0.029 s: api query_variant_calls with protobuf +21: 21:21:16.363 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.363 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.364 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.364 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.364 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.364 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.364 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7390,13 +7394,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.908 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.908 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.909 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.910 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.910 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.910 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.910 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.374 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.374 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.374 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.375 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.375 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.375 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.375 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7425,22 +7429,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.927 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.927 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.927 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.928 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.928 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.929 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.929 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.015 s: Try query with ISHOMREF -21: 0.053 s: api query_variant_calls with protobuf -21: 12:44:21.942 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.942 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.942 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.943 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.943 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.943 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.943 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.384 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.384 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.384 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.385 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.385 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.385 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.385 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.008 s: Try query with ISHOMREF +21: 0.029 s: api query_variant_calls with protobuf +21: 21:21:16.392 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.392 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.393 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.393 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.393 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.393 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.393 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7469,13 +7473,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.966 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.966 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.967 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.967 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.967 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.968 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.968 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.403 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.403 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.403 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.403 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.403 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.404 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.404 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7504,22 +7508,26 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:21.986 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.986 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.986 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.987 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.987 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.987 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:21.987 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.012 s: Try query with ISHOMREF -21: 0.056 s: api query_variant_calls with protobuf -21: 12:44:21.998 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:21.998 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:21.999 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.999 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:21.999 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:22.000 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:22.000 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.413 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.413 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.413 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.414 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.414 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.414 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.414 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +9: =============================================================================== +9: All tests passed (10488234 assertions in 9 test cases) +9: +12/22 Test #9: test_tiledb_utils ................ Passed 0.62 sec +21: 0.009 s: Try query with ISHOMREF +21: 0.030 s: api query_variant_calls with protobuf +21: 21:21:16.422 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.422 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.422 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.423 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.423 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.423 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.423 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7548,13 +7556,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:22.019 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:22.019 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:22.019 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:22.020 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:22.020 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:22.020 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:22.020 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.434 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.434 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.435 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.435 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.435 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.436 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.436 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7583,36 +7591,37 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 12:44:22.036 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:22.036 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:22.037 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:22.037 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:22.037 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:22.038 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:22.038 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.011 s: Try query with ISHOMREF -21: 0.050 s: api query_variant_calls with protobuf -21: 0.017 s: Base configuration -21: 0.256 s: api query_variant_calls with protobuf and config -21: 12:44:22.305 ERROR NativeGenomicsDB - pid=990454 tid=990454 Could not parse query_configuration. Only protobuf QueryConfiguration binary strings accepted as input argument +21: 21:21:16.446 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.446 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.447 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.447 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.447 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.448 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.448 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.009 s: Try query with ISHOMREF +21: 0.033 s: api query_variant_calls with protobuf +21: 0.006 s: Base configuration +21: 0.007 s: api query_variant_calls with protobuf and config +21: 21:21:16.463 ERROR NativeGenomicsDB - pid=2641993 tid=2641993 Could not parse query_configuration. Only protobuf QueryConfiguration binary strings accepted as input argument 21: 0.000 s: Subset Array with pb string that is not Query or ExportConfiguration -21: 0.006 s: api query_variant_calls with protobuf and config -21: 0.016 s: Subset Array using QueryConfiguration -21: 0.017 s: api query_variant_calls with protobuf and config -21: 0.016 s: Subset Array using ExportConfiguration -21: 0.018 s: api query_variant_calls with protobuf and config -21: 0.016 s: Subset Array using QueryConfiguration - two intervals -21: 0.018 s: api query_variant_calls with protobuf and config -21: 0.030 s: Subset Array using QueryConfiguration - multiple queries -21: 0.032 s: api query_variant_calls with protobuf and config -21: 0.027 s: Test filter test for 0 -21: 0.027 s: api query_variant_calls with protobuf new -21: 0.018 s: Test filter test for 1 -21: 0.018 s: api query_variant_calls with protobuf new -21: 0.022 s: Test filter test for 2 -21: 0.023 s: api query_variant_calls with protobuf new -21: 0.018 s: Test filter test for 3 -21: 0.018 s: api query_variant_calls with protobuf new +21: 0.001 s: api query_variant_calls with protobuf and config +21: 0.006 s: Subset Array using QueryConfiguration +21: 0.007 s: api query_variant_calls with protobuf and config +21: 0.006 s: Subset Array using ExportConfiguration +21: 0.007 s: api query_variant_calls with protobuf and config +21: 0.006 s: Subset Array using QueryConfiguration - two intervals +21: 0.007 s: api query_variant_calls with protobuf and config +21: 0.008 s: Subset Array using QueryConfiguration - multiple queries +21: 0.009 s: api query_variant_calls with protobuf and config +21: 0.007 s: Test filter test for 0 +21: 0.007 s: api query_variant_calls with protobuf new +21: 0.007 s: Test filter test for 1 +21: 0.007 s: api query_variant_calls with protobuf new +21: 0.007 s: Test filter test for 2 +21: 0.007 s: api query_variant_calls with protobuf new +21: 0.007 s: Test filter test for 3 +21: 0.007 s: api query_variant_calls with protobuf new +17: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/tmp/TileDBTestvMHNrf/test_posixfs_dirfile/foo1 errno=2(No such file or directory) 21: 273 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"DP":[null,null],"GT":["C/C","G/A"],"REF":["C","G"]},"HG01530":{"CHR":["1"],"POS":[17385],"DP":[76],"GT":["G/A"],"REF":["G"]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"DP":[null,120],"GT":["C/C","T/T"],"REF":["C","G"]}} 21: 21: 207 {"FIELD":["CHR","POS","DP","GT","REF"],"HG00141":[["1",12141,null,"C/C","C"],["1",17385,null,"G/A","G"]],"HG01530":[["1",17385,76,"G/A","G"]],"HG01958":[["1",12145,null,"C/C","C"],["1",17385,120,"T/T","G"]]} @@ -7627,71 +7636,132 @@ 21: 21: 1805 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"AD":[null,58],"BaseQRankSum":[null,-2.0959999561309816],"ClippingRankSum":[null,-1.8589999675750733],"DP":[null,null],"DP_FORMAT":[2,80],"DS":["1","1"],"FILTER":[null,0],"GQ":[0,99],"GT":["C/C","G/A"],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MIN_DP":[0,null],"MLEAC":[null,1],"MLEAF":[null,0.5],"MQ":[null,31.719999313354493],"MQ0":[null,8],"MQRankSum":[null,-0.32899999618530276],"PGT":[null,"0|1"],"PID":[null,"17385_G_A"],"PL":[0,504],"QUAL":[null,475.7699890136719],"RAW_MQ":[null,5.5],"REF":["C","G"],"ReadPosRankSum":[null,0.004999999888241291],"SB":[null,"[58, 0, 22, 0]"]},"HG01530":{"CHR":["1"],"POS":[17385],"AD":[40],"BaseQRankSum":[1.0460000038146973],"ClippingRankSum":[-2.242000102996826],"DP":[76],"DP_FORMAT":[76],"DS":[null],"FILTER":[null],"GQ":[99],"GT":["G/A"],"HaplotypeScore":[null],"InbreedingCoeff":[null],"MIN_DP":[null],"MLEAC":[1],"MLEAF":[0.5],"MQ":[59.369998931884769],"MQ0":[0],"MQRankSum":[-0.4320000112056732],"PGT":[null],"PID":[null],"PL":[1018],"QUAL":[989.77001953125],"RAW_MQ":[null],"REF":["G"],"ReadPosRankSum":[2.055000066757202],"SB":["[9, 31, 13, 23]"]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"AD":[null,0],"BaseQRankSum":[null,-2.0739998817443849],"ClippingRankSum":[null,0.5550000071525574],"DP":[null,120],"DP_FORMAT":[3,120],"DS":["1",null],"FILTER":[null,0],"GQ":[0,99],"GT":["C/C","T/T"],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MIN_DP":[0,null],"MLEAC":[null,2],"MLEAF":[null,1.0],"MQ":[null,29.81999969482422],"MQ0":[null,3],"MQRankSum":[null,-1.36899995803833],"PGT":[null,"0|1"],"PID":[null,"17385_G_T"],"PL":[0,3336],"QUAL":[null,3302.77001953125],"RAW_MQ":[null,2.5],"REF":["C","G"],"ReadPosRankSum":[null,-0.10100000351667404],"SB":[null,"[0, 0, 0, 0]"]}} 21: -21: 0.340 s: api query_variant_calls with JSONVariantCallProcessor +21: 0.049 s: api query_variant_calls with JSONVariantCallProcessor 21: 0.000 s: Test genomicsdb demo test case -21: 0.609 s: api generate_vcf direct -21: 12:44:23.429 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.429 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.429 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.030 s: api generate_vcf with json -21: 12:44:23.460 DEBUG NativeGenomicsDB - pid=990454 tid=991053 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.460 WARN NativeGenomicsDB - pid=990454 tid=991053 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.461 DEBUG NativeGenomicsDB - pid=990454 tid=991053 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.477 DEBUG NativeGenomicsDB - pid=990454 tid=991050 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.477 WARN NativeGenomicsDB - pid=990454 tid=991050 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.478 DEBUG NativeGenomicsDB - pid=990454 tid=991050 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.489 DEBUG NativeGenomicsDB - pid=990454 tid=991049 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.489 WARN NativeGenomicsDB - pid=990454 tid=991049 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.490 DEBUG NativeGenomicsDB - pid=990454 tid=991049 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.509 DEBUG NativeGenomicsDB - pid=990454 tid=991047 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.509 WARN NativeGenomicsDB - pid=990454 tid=991047 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.509 DEBUG NativeGenomicsDB - pid=990454 tid=991051 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.509 WARN NativeGenomicsDB - pid=990454 tid=991051 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.509 DEBUG NativeGenomicsDB - pid=990454 tid=991051 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.526 DEBUG NativeGenomicsDB - pid=990454 tid=991054 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.526 WARN NativeGenomicsDB - pid=990454 tid=991054 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.526 DEBUG NativeGenomicsDB - pid=990454 tid=991054 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.545 DEBUG NativeGenomicsDB - pid=990454 tid=991048 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.545 WARN NativeGenomicsDB - pid=990454 tid=991048 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.546 DEBUG NativeGenomicsDB - pid=990454 tid=991048 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.545 DEBUG NativeGenomicsDB - pid=990454 tid=991052 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.549 WARN NativeGenomicsDB - pid=990454 tid=991052 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.554 DEBUG NativeGenomicsDB - pid=990454 tid=991052 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.555 DEBUG NativeGenomicsDB - pid=990454 tid=991047 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.287 s: api generate_vcf with json multiple threads -21: 12:44:23.745 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.745 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.746 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.747 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.747 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.747 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:23.747 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.773 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.773 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.773 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.774 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.774 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.774 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:23.774 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.802 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 12:44:23.802 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.802 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.803 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 12:44:23.803 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 12:44:23.803 DEBUG NativeGenomicsDB - pid=990454 tid=990454 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 12:44:23.803 WARN NativeGenomicsDB - pid=990454 tid=990454 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestfqItzQ/test_posixfs_dirread_write/foo +17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestfqItzQ/test_posixfs_dirread_write/foo +17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestfqItzQ/test_posixfs_dirread_write/foo +21: 0.117 s: api generate_vcf direct +21: 21:21:16.689 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.689 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.689 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.011 s: api generate_vcf with json +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642614 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642616 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.700 WARN NativeGenomicsDB - pid=2641993 tid=2642616 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642617 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.700 WARN NativeGenomicsDB - pid=2641993 tid=2642617 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.700 WARN NativeGenomicsDB - pid=2641993 tid=2642614 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642618 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.700 WARN NativeGenomicsDB - pid=2641993 tid=2642618 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642619 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.700 WARN NativeGenomicsDB - pid=2641993 tid=2642619 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642621 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.700 WARN NativeGenomicsDB - pid=2641993 tid=2642621 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642620 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.700 WARN NativeGenomicsDB - pid=2641993 tid=2642620 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642616 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642617 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642618 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642614 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642619 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642621 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.700 DEBUG NativeGenomicsDB - pid=2641993 tid=2642620 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.702 DEBUG NativeGenomicsDB - pid=2641993 tid=2642615 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.702 WARN NativeGenomicsDB - pid=2641993 tid=2642615 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.702 DEBUG NativeGenomicsDB - pid=2641993 tid=2642615 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.021 s: api generate_vcf with json multiple threads +21: 21:21:16.721 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.721 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.721 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.722 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.722 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.722 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.722 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.731 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.731 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.731 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.732 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.732 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.732 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.732 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.740 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 21:21:16.740 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.740 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.741 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 21:21:16.741 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 21:21:16.741 DEBUG NativeGenomicsDB - pid=2641993 tid=2641993 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 21:21:16.741 WARN NativeGenomicsDB - pid=2641993 tid=2641993 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: ---------------- 21: Interval:[0,1000000000] 21: -21: 0.059 s: api annotate query_variant_calls with test datasource 0 +21: 0.021 s: api annotate query_variant_calls with test datasource 0 21: =============================================================================== 21: All tests passed (1531 assertions in 26 test cases) 21: -7: Randomness seeded to: 2414750493 -16/22 Test #21: api_tests ........................ Passed 5.27 sec +13/22 Test #21: api_tests ........................ Passed 0.89 sec +14: Mon Mar 23 21:21:16 2026 Memory stats Tracking memory usage END size=6MB resident=3MB share=3MB text=496KB lib=0 data=536KB dt=0 +14: =============================================================================== +14: test cases: 1 | 1 passed +14: assertions: - none - +14: +14/22 Test #14: test_mem_utils ................... Passed 1.00 sec +17: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) +17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) +18: =============================================================================== +18: All tests passed (450703 assertions in 3 test cases) +18: +15/22 Test #18: test_storage_buffer .............. Passed 1.43 sec +19: Example 6: Done running ./tiledb_array_write_dense_1 +19: Example 7: Running ./tiledb_array_write_sparse_1... +20: 21:21:17.504 INFO NativeGenomicsDB - pid=2641962 tid=2641962 Plink progress 3452039 / 6904084 = 50.00% +20: 21:21:17.504 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 PL field for sample: HG00141 row: 0 column: 12277 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] +20: 21:21:17.504 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 GL field for sample: HG00141 row: 0 column: 12277 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] +20: 21:21:17.504 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 PL field for sample: HG00141 row: 0 column: 12299 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 GL field for sample: HG00141 row: 0 column: 12299 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 PL field for sample: HG01958 row: 1 column: 12299 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 GL field for sample: HG01958 row: 1 column: 12299 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 PL field for sample: HG00141 row: 0 column: 12399 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 GL field for sample: HG00141 row: 0 column: 12399 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 PL field for sample: HG01958 row: 1 column: 12399 contains a negative value or otherwise did not parse, full string: [0, 1, -2147483648] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 GL field for sample: HG01958 row: 1 column: 12399 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 GL field for sample: HG00141 row: 0 column: 12499 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan, nan, nan, nan] +20: 21:21:17.505 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 PL field for sample: HG01958 row: 1 column: 12499 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648] +20: 21:21:17.505 WARN NativeGenomicsDB - pid=2641962 tid=2641962 GL probabilities at sample: HG01958 row: 1 column: 12499 sum to 0.8981071705534972, expected near 1. Generated BGEN may be invalid +17: [TileDB::FileSystem] Error: (read_from_file) Cannot open simultaneously for reads/writes path=test_posixfs_dir_locking/foo +20: 1.458 s: test bgen +20: 21:21:17.640 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 VariantStorageManagerException exception : Could not open workspace +20: 21:21:17.641 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Could not open array non_existent_array in workspace /tmp/GenomicsDBOmXK0a/ws +20: 21:21:17.641 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 VariantQueryProcessorException : Could not open array non_existent_array at workspace /tmp/GenomicsDBOmXK0a/ws +20: 0.001 s: constructor +20: 21:21:17.641 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 21:21:17.641 WARN NativeGenomicsDB - pid=2641962 tid=2641962 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 21:21:17.642 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 21:21:17.649 ERROR NativeGenomicsDB - pid=2641962 tid=2641962 Invalid query attribute : non_existent_attribute +20: 0.008 s: test basic queries +20: 21:21:17.649 INFO NativeGenomicsDB - pid=2641962 tid=2641962 Mem usage Check basic memory usage rss=47M +20: 0.000 s: check basic memory usage +20: =============================================================================== +20: All tests passed (1439 assertions in 34 test cases) +20: +20: 21:21:17.649 DEBUG NativeGenomicsDB - pid=2641962 tid=2641962 Deleting htslib_fs_adapter tiledb_ctx_map +16/22 Test #20: ctests ........................... Passed 1.84 sec +17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_sync +17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_no_close +17: =============================================================================== +17: All tests passed (258 assertions in 11 test cases) +17: +17/22 Test #17: test_posixfs ..................... Passed 3.51 sec +19: Example 7: Done running ./tiledb_array_write_sparse_1 +5: Randomness seeded to: 1843554357 +5: [TileDB::Expression] Error: (evaluate_cell) NYI: Filter expressions do not handle empty values yet +5: =============================================================================== +5: All tests passed (527 assertions in 6 test cases) +5: +18/22 Test #5: test_array_iterator .............. Passed 7.80 sec 19: Example 8: Running ./tiledb_ls... 19: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=&& errno=2(No such file or directory) 19: Example 8: Done running ./tiledb_ls @@ -7717,41 +7787,7 @@ 19: Example 9: Done running ./tiledb_array_read_dense_1 19: Example 10: Running ./tiledb_array_write_dense_2... 19: Example 10: Done running ./tiledb_array_write_dense_2 -18: =============================================================================== -18: All tests passed (450703 assertions in 3 test cases) -18: -17/22 Test #18: test_storage_buffer .............. Passed 7.14 sec -20: 12:44:25.670 INFO NativeGenomicsDB - pid=990420 tid=990420 Plink progress 3452039 / 6904084 = 50.00% -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 PL field for sample: HG00141 row: 0 column: 12277 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 GL field for sample: HG00141 row: 0 column: 12277 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 PL field for sample: HG00141 row: 0 column: 12299 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 GL field for sample: HG00141 row: 0 column: 12299 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 PL field for sample: HG01958 row: 1 column: 12299 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 GL field for sample: HG01958 row: 1 column: 12299 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 PL field for sample: HG00141 row: 0 column: 12399 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 GL field for sample: HG00141 row: 0 column: 12399 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 PL field for sample: HG01958 row: 1 column: 12399 contains a negative value or otherwise did not parse, full string: [0, 1, -2147483648] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 GL field for sample: HG01958 row: 1 column: 12399 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 GL field for sample: HG00141 row: 0 column: 12499 contains a strictly positive value or otherwise did not parse, full string [nan, nan, nan, nan, nan, nan] -20: 12:44:25.670 ERROR NativeGenomicsDB - pid=990420 tid=990420 PL field for sample: HG01958 row: 1 column: 12499 contains a negative value or otherwise did not parse, full string: [-2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648] -20: 12:44:25.670 WARN NativeGenomicsDB - pid=990420 tid=990420 GL probabilities at sample: HG01958 row: 1 column: 12499 sum to 0.8981071705534972, expected near 1. Generated BGEN may be invalid -20: 6.266 s: test bgen -20: 12:44:25.709 ERROR NativeGenomicsDB - pid=990420 tid=990420 VariantStorageManagerException exception : Could not open workspace -20: 12:44:25.710 ERROR NativeGenomicsDB - pid=990420 tid=990420 Could not open array non_existent_array in workspace /tmp/GenomicsDBDHbtDX/ws -20: 12:44:25.710 ERROR NativeGenomicsDB - pid=990420 tid=990420 VariantQueryProcessorException : Could not open array non_existent_array at workspace /tmp/GenomicsDBDHbtDX/ws -20: 0.001 s: constructor -20: 12:44:25.710 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 12:44:25.710 WARN NativeGenomicsDB - pid=990420 tid=990420 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 12:44:25.711 DEBUG NativeGenomicsDB - pid=990420 tid=990420 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -20: 12:44:25.727 ERROR NativeGenomicsDB - pid=990420 tid=990420 Invalid query attribute : non_existent_attribute -20: 0.017 s: test basic queries -20: 12:44:25.727 INFO NativeGenomicsDB - pid=990420 tid=990420 Mem usage Check basic memory usage rss=49M -20: 0.000 s: check basic memory usage -20: =============================================================================== -20: All tests passed (1439 assertions in 34 test cases) -20: -20: 12:44:25.727 DEBUG NativeGenomicsDB - pid=990420 tid=990420 Deleting htslib_fs_adapter tiledb_ctx_map -18/22 Test #20: ctests ........................... Passed 7.30 sec +7: Randomness seeded to: 967011845 19: Example 11: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- @@ -7786,11 +7822,6 @@ 19: Example 12: Done running ./tiledb_array_read_dense_2 19: Example 13: Running ./tiledb_array_write_dense_sorted... 19: Example 13: Done running ./tiledb_array_write_dense_sorted -8: Randomness seeded to: 2927176462 -7: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== -7: All tests passed (102601986 assertions in 4 test cases) -7: -19/22 Test #7: test_dense_array_api ............. Passed 16.46 sec 19: Example 14: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- @@ -7813,10 +7844,11 @@ 19: Example 14: Done running ./tiledb_array_read_dense_1 19: Example 15: Running ./tiledb_array_update_dense_1... 19: Example 15: Done running ./tiledb_array_update_dense_1 -8: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== -8: All tests passed (15551475 assertions in 15 test cases) -8: -20/22 Test #8: test_sparse_array_api ............ Passed 17.93 sec +7: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== +7: All tests passed (121088019 assertions in 4 test cases) +7: +19/22 Test #7: test_dense_array_api ............. Passed 29.83 sec +8: Randomness seeded to: 1354614502 19: Example 16: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- @@ -7839,6 +7871,10 @@ 19: Example 16: Done running ./tiledb_array_read_dense_1 19: Example 17: Running ./tiledb_array_update_dense_2... 19: Example 17: Done running ./tiledb_array_update_dense_2 +8: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== +8: All tests passed (17511201 assertions in 15 test cases) +8: +20/22 Test #8: test_sparse_array_api ............ Passed 35.68 sec 19: Example 18: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- @@ -7862,7 +7898,7 @@ 19: Example 19: Running ./tiledb_array_write_sparse_1... 19: Example 19: Done running ./tiledb_array_write_sparse_1 22: Build with DISABLE_MPI option set, not running gt_mpi_gather tests -21/22 Test #22: tools_tests ...................... Passed 29.15 sec +21/22 Test #22: tools_tests ...................... Passed 39.33 sec 19: Example 20: Running ./tiledb_array_read_sparse_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- @@ -8061,17 +8097,17 @@ 19: 0, 2, 3 2 third 19: 2, 1, 1 3 fourth 19: Example 42: Done running ./tiledb_array_3d -22/22 Test #19: ci_tests ......................... Passed 55.03 sec +22/22 Test #19: ci_tests ......................... Passed 66.36 sec 100% tests passed, 0 tests failed out of 22 -Total Test time (real) = 55.41 sec +Total Test time (real) = 66.39 sec make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4' dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.4 -B/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -8083,9 +8119,9 @@ cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". @@ -8140,8 +8176,11 @@ Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target genomicsdb-hts Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". @@ -8167,19 +8206,17 @@ Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +[ 0%] Built target protobuf_ep Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". -[ 0%] Built target protobuf_ep -Consolidate compiler generated dependencies of target genomicsdb-hts make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/resources /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 13%] Built target genomicsdb-hts make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' @@ -8188,48 +8225,47 @@ Consolidate compiler generated dependencies of target TILEDB_CORE_OBJECTS make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build -[ 13%] Built target genomicsdb-hts [ 13%] Built target PROTOBUF_GENERATED_CXX_TARGET make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake "--color=" Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +[ 25%] Built target TILEDB_CORE_OBJECTS Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -[ 25%] Built target TILEDB_CORE_OBJECTS +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/json_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". @@ -8245,21 +8281,21 @@ Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_shared -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' @@ -8267,1082 +8303,1082 @@ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' [ 25%] Built target tiledb_static make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend -[ 26%] Built target tiledb_shared +make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend -Consolidate compiler generated dependencies of target test_array_schema make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target test_print_array_schema -make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_print_book_keeping -Consolidate compiler generated dependencies of target test_sparse_array_benchmark -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend +[ 26%] Built target tiledb_shared make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_array_iterator -Consolidate compiler generated dependencies of target test_array_schema_api -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" Consolidate compiler generated dependencies of target GenomicsDB_library_object_files make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build -Consolidate compiler generated dependencies of target test_dense_array_api -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build -[ 26%] Built target test_array_schema -make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 27%] Built target test_print_array_schema -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 27%] Built target test_print_book_keeping -[ 28%] Built target test_sparse_array_benchmark -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend -[ 29%] Built target test_array_iterator +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend -[ 31%] Built target test_array_schema_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" -[ 45%] Built target GenomicsDB_library_object_files make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" +Consolidate compiler generated dependencies of target test_print_book_keeping make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". -[ 46%] Built target test_dense_array_api -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target test_codec -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/depend cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target test_tiledb_utils +Consolidate compiler generated dependencies of target test_array_schema make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/DependInfo.cmake "--color=" +Consolidate compiler generated dependencies of target test_print_array_schema +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_sparse_array_api -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_codec_filter -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build'. +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target test_array_iterator +Consolidate compiler generated dependencies of target test_sparse_array_api +Consolidate compiler generated dependencies of target test_array_schema_api +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend -Consolidate compiler generated dependencies of target test_filter_api -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/DependInfo.cmake "--color=" +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_uri +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target test_posixfs +Consolidate compiler generated dependencies of target test_sparse_array_benchmark +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_expressions -make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build'. +make[4]: Nothing to be done for 'src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build'. +Consolidate compiler generated dependencies of target test_expressions +Consolidate compiler generated dependencies of target test_tiledb_utils +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build +Consolidate compiler generated dependencies of target test_dense_array_api +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target test_codec +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build +Consolidate compiler generated dependencies of target test_codec_filter +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_posixfs +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_mem_utils +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build +Consolidate compiler generated dependencies of target tiledb_array_3d +Consolidate compiler generated dependencies of target tiledb_array_consolidate +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build -[ 47%] Built target test_codec -make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target test_utils -[ 48%] Built target test_filter_api -[ 47%] Built target test_codec_filter +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 49%] Built target test_sparse_array_api -make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build Consolidate compiler generated dependencies of target test_storage_buffer +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 26%] Built target test_print_book_keeping +Consolidate compiler generated dependencies of target tiledb_array_aio_read_dense +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 49%] Built target test_expressions +[ 26%] Built target test_array_schema +make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build -[ 50%] Built target test_uri -[ 50%] Built target test_tiledb_utils +make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build +Consolidate compiler generated dependencies of target test_filter_api +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build'. +Consolidate compiler generated dependencies of target tiledb_array_aio_write_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 51%] Built target test_posixfs -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 51%] Built target test_mem_utils -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake "--color=" -[ 52%] Built target test_utils -[ 52%] Built target test_storage_buffer -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target test_uri make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target tiledb_array_3d -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build -Consolidate compiler generated dependencies of target tiledb_array_aio_read_dense +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake "--color=" +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_create_dense -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_aio_write_dense +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build'. make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build -Consolidate compiler generated dependencies of target tiledb_array_consolidate -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_create_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build +[ 41%] Built target GenomicsDB_library_object_files make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build -Consolidate compiler generated dependencies of target tiledb_array_create_sparse -[ 53%] Built target tiledb_array_3d -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_iterator_dense +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 42%] Built target test_print_array_schema +[ 43%] Built target test_array_schema_api +[ 44%] Built target test_sparse_array_api +[ 45%] Built target test_dense_array_api +[ 46%] Built target test_array_iterator +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend +[ 48%] Built target test_tiledb_utils +[ 48%] Built target test_sparse_array_benchmark make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 53%] Built target tiledb_array_aio_read_dense -[ 53%] Built target tiledb_array_create_dense +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake "--color=" +[ 49%] Built target test_posixfs +[ 49%] Built target test_codec_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend -[ 54%] Built target tiledb_array_aio_write_dense +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend +[ 49%] Built target test_expressions make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake "--color=" -[ 55%] Built target tiledb_array_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake "--color=" -[ 56%] Built target tiledb_array_create_sparse +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend +[ 49%] Built target tiledb_array_create_dense +[ 50%] Built target tiledb_array_consolidate +[ 51%] Built target tiledb_array_3d +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". +[ 53%] Built target test_utils +[ 53%] Built target tiledb_array_aio_write_dense +Consolidate compiler generated dependencies of target tiledb_array_create_sparse +[ 53%] Built target test_storage_buffer +[ 53%] Built target tiledb_array_aio_read_dense +[ 54%] Built target test_codec +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 54%] Built target test_mem_utils make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend +[ 55%] Built target test_filter_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". -[ 56%] Built target tiledb_array_iterator_dense -Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 55%] Built target test_uri cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend -Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_sparse +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse_filter +Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_sparse +[ 56%] Built target tiledb_array_create_sparse +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_dense -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build'. +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend +Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse_filter +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake "--color=" +Consolidate compiler generated dependencies of target tiledb_array_iterator_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build +Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_dense +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build'. +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_1 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 57%] Built target tiledb_array_iterator_sparse +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build +Consolidate compiler generated dependencies of target tiledb_array_primitive +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_1 +Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 58%] Built target tiledb_array_parallel_consolidate_dense -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 59%] Built target tiledb_array_iterator_sparse_filter -[ 58%] Built target tiledb_array_parallel_consolidate_sparse -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend -Consolidate compiler generated dependencies of target tiledb_array_parallel_read_mpi_io_dense -[ 59%] Built target tiledb_array_parallel_read_dense_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 60%] Built target tiledb_array_parallel_read_dense_2 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_2 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_mpi_io_dense +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build'. +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build'. +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build'. +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 61%] Built target tiledb_array_parallel_read_mpi_io_dense -[ 61%] Built target tiledb_array_parallel_read_sparse_1 -[ 62%] Built target tiledb_array_parallel_read_sparse_2 -[ 62%] Built target tiledb_array_parallel_write_dense_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend +Consolidate compiler generated dependencies of target tiledb_array_read_dense_sorted +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 63%] Built target tiledb_array_parallel_write_dense_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" -[ 64%] Built target tiledb_array_parallel_write_sparse_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" +[ 57%] Built target tiledb_array_iterator_sparse_filter make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_primitive +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_dense_1 -Consolidate compiler generated dependencies of target tiledb_array_read_dense_sorted +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_1 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_read_dense_3 -Consolidate compiler generated dependencies of target tiledb_array_read_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_1 +[ 58%] Built target tiledb_array_parallel_consolidate_sparse +[ 58%] Built target tiledb_array_parallel_consolidate_dense +Consolidate compiler generated dependencies of target tiledb_array_read_dense_2 +Consolidate compiler generated dependencies of target tiledb_array_read_dense_3 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build +[ 59%] Built target tiledb_array_parallel_write_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". +[ 59%] Built target tiledb_array_iterator_dense +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 64%] Built target tiledb_array_parallel_write_sparse_2 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". -[ 65%] Built target tiledb_array_primitive -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_1 -[ 66%] Built target tiledb_array_read_dense_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build -[ 67%] Built target tiledb_array_read_dense_3 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 67%] Built target tiledb_array_read_dense_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend -[ 68%] Built target tiledb_array_read_dense_sorted make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend -[ 68%] Built target tiledb_array_read_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build +Consolidate compiler generated dependencies of target tiledb_array_read_dense_1 +[ 60%] Built target tiledb_array_primitive make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 61%] Built target tiledb_array_parallel_read_sparse_2 +[ 61%] Built target tiledb_array_parallel_write_dense_2 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_1 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend +[ 62%] Built target tiledb_array_iterator_sparse make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build'. +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_2 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_1 +[ 62%] Built target tiledb_array_parallel_read_dense_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_update_dense_1 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_update_dense_2 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_sorted +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +[ 63%] Built target tiledb_array_parallel_read_dense_2 +[ 63%] Built target tiledb_array_parallel_read_sparse_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build +[ 63%] Built target tiledb_array_read_dense_2 +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_2 +Consolidate compiler generated dependencies of target tiledb_array_update_sparse_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_update_dense_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build +[ 64%] Built target tiledb_array_read_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_sorted -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 68%] Built target tiledb_array_read_sparse_filter_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_update_dense_2 -[ 69%] Built target tiledb_array_read_sparse_filter_2 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build -[ 70%] Built target tiledb_array_read_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" -[ 71%] Built target tiledb_array_read_sparse_sorted -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend -[ 71%] Built target tiledb_array_update_dense_1 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend -[ 72%] Built target tiledb_array_update_dense_2 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_update_sparse_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_update_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build +[ 64%] Built target tiledb_array_read_sparse_1 +[ 65%] Built target tiledb_array_parallel_write_sparse_1 +[ 66%] Built target tiledb_array_read_dense_3 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". +[ 67%] Built target tiledb_array_parallel_read_mpi_io_dense Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_write_dense_sorted -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledb_array_write_dense_1 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". +[ 67%] Built target tiledb_array_parallel_write_sparse_2 Consolidate compiler generated dependencies of target tiledb_array_write_dense_2 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_1 +Consolidate compiler generated dependencies of target tiledb_array_update_sparse_2 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 72%] Built target tiledb_array_update_sparse_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 73%] Built target tiledb_array_update_sparse_2 -[ 74%] Built target tiledb_array_write_dense_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend -[ 75%] Built target tiledb_array_write_dense_sorted -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" +[ 68%] Built target tiledb_array_read_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend -[ 75%] Built target tiledb_array_write_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend -[ 76%] Built target tiledb_array_write_sparse_1 +[ 68%] Built target tiledb_array_update_sparse_1 +[ 69%] Built target tiledb_array_update_dense_2 +[ 69%] Built target tiledb_array_read_sparse_filter_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_2 +[ 70%] Built target tiledb_array_read_sparse_filter_2 +[ 71%] Built target tiledb_array_read_sparse_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_3 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend +[ 72%] Built target tiledb_array_read_sparse_sorted +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" +[ 72%] Built target tiledb_array_update_dense_1 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend +[ 72%] Built target tiledb_array_write_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build'. +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" +[ 73%] Built target tiledb_array_write_dense_1 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build -Consolidate compiler generated dependencies of target tiledb_catching_errors +[ 74%] Built target tiledb_array_update_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend +make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend +make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_4 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_config +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_catching_errors +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_3 +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_4 +Consolidate compiler generated dependencies of target tiledb_ls +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_metadata_update make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_clear_delete_move -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". +[ 75%] Built target tiledb_array_write_sparse_1 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build'. +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_2 +Consolidate compiler generated dependencies of target tiledb_delete +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build -Consolidate compiler generated dependencies of target tiledb_config +Consolidate compiler generated dependencies of target tiledb_clear_delete_move make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build +Consolidate compiler generated dependencies of target tiledb_metadata_consolidate make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_delete +Consolidate compiler generated dependencies of target tiledb_metadata_create make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_ls_workspaces +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build +Consolidate compiler generated dependencies of target tiledb_array_write_dense_sorted make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 76%] Built target tiledb_array_write_sparse_2 -[ 77%] Built target tiledb_array_write_sparse_3 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend -[ 77%] Built target tiledb_array_write_sparse_4 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend -[ 78%] Built target tiledb_clear_delete_move -[ 79%] Built target tiledb_catching_errors -[ 79%] Built target tiledb_config -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend -[ 80%] Built target tiledb_delete -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target tiledb_ls -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_ls_workspaces +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build +Consolidate compiler generated dependencies of target tiledb_metadata_iterator make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_metadata_consolidate make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_metadata_create make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_metadata_read Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_metadata_write +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_metadata_primitive make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_metadata_iterator -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build'. +Consolidate compiler generated dependencies of target tiledb_metadata_primitive make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build -Consolidate compiler generated dependencies of target tiledb_metadata_read make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 81%] Built target tiledb_ls -[ 81%] Built target tiledb_metadata_create -[ 81%] Built target tiledb_ls_workspaces -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" -[ 82%] Built target tiledb_metadata_consolidate -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend -[ 82%] Built target tiledb_metadata_read make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend -[ 83%] Built target tiledb_metadata_iterator -make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". -[ 84%] Built target tiledb_metadata_primitive -Consolidate compiler generated dependencies of target tiledb_metadata_update +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake "--color=" -make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build +Dependencies file "src/main/CMakeFiles/tiledbgenomicsdb.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_metadata_write -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build -Dependencies file "src/main/CMakeFiles/tiledbgenomicsdb.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_workspace_group_create -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target tiledbgenomicsdb -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build'. +make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build +Consolidate compiler generated dependencies of target tiledb_workspace_group_create +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build'. +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdb.dir/build'. make[4]: Nothing to be done for 'src/main/CMakeFiles/tiledbgenomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build -[ 85%] Built target tiledb_metadata_update +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build +[ 76%] Built target tiledb_array_write_sparse_3 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdb.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 85%] Built target tiledb_metadata_write +[ 76%] Built target tiledb_array_write_sparse_4 +[ 76%] Built target tiledb_config +[ 77%] Built target tiledb_catching_errors +[ 78%] Built target tiledb_clear_delete_move +[ 78%] Built target tiledb_metadata_create +[ 80%] Built target tiledb_ls_workspaces +[ 81%] Built target tiledb_delete +[ 79%] Built target tiledb_array_write_dense_sorted +[ 81%] Built target tiledb_metadata_iterator +[ 82%] Built target tiledb_ls +[ 82%] Built target tiledb_array_write_sparse_2 +[ 83%] Built target tiledb_metadata_consolidate +[ 83%] Built target tiledb_metadata_read +[ 84%] Built target tiledb_metadata_primitive +[ 85%] Built target tiledb_metadata_update [ 86%] Built target tiledb_workspace_group_create +[ 86%] Built target tiledb_metadata_write [ 86%] Built target tiledbgenomicsdb -make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake "--color=" [ 86%] Built target genomicsdb +make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend +make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" -make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". +make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target genomicsdbjni make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". +make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". -make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake "--color=" -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/compiler_depend.internal". -make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". +make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target api_tests make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdbjni.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_genomicsdb_demo +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 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"--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake "--color=" +Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". +Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d" is newer than depends file 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depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". +Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". +Dependencies file "tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/compiler_depend.internal". +Dependencies file "tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/compiler_depend.internal". +Dependencies file 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Dependencies file "tools/CMakeFiles/create_genomicsdb_workspace.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target api_tests +Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". 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directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target vcfdiff -Dependencies file "tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/compiler_depend.internal". -make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build +Consolidate compiler generated dependencies of target vcf_histogram +Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". +Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/create_genomicsdb_workspace.dir/build'. +make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb_init.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target genomicsdbjni +Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Dependencies file "tools/CMakeFiles/gt_mpi_gather.dir/link.d" is newer than depends file 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"/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". +Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target gt_mpi_gather -make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build +Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target test_genomicsdb_importer make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb_init.dir/build'. +make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/api_tests.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb.dir/build'. +make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/consolidate_genomicsdb_array.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target ctests -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build -make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/ctests.dir/build'. +make[4]: Nothing to be done for 'tools/CMakeFiles/create_genomicsdb_workspace.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 87%] Built target genomicsdbjni +make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/gt_mpi_gather.dir/build'. +make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdbjni.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build +make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/vcfdiff.dir/build'. +make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf_histogram.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 88%] Built target api_tests -[ 88%] Built target test_genomicsdb_demo -[ 88%] Built target create_genomicsdb_workspace -[ 88%] Built target vcf2genomicsdb_init -[ 89%] Built target vcf2genomicsdb -make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend -[ 90%] Built target consolidate_genomicsdb_array -make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake "--color=" -[ 91%] Built target vcfdiff +make[4]: Nothing to be done for 'tools/CMakeFiles/vcfdiff.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target ctests make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 96%] Built target ctests -cd /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.4 /build/reproducible-path/genomicsdb-1.5.4/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake "--color=" -[ 97%] Built target gt_mpi_gather -[ 98%] Built target vcf_histogram -Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". -Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". -Dependencies file "example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_genomicsdb_importer -Dependencies file "example/CMakeFiles/test_genomicsdb_bcf_generator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_importer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_genomicsdb_bcf_generator +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'tools/CMakeFiles/gt_mpi_gather.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build +[ 87%] Built target api_tests +[ 87%] Built target create_genomicsdb_workspace +[ 87%] Built target test_genomicsdb_demo +[ 88%] Built target consolidate_genomicsdb_array +[ 86%] Built target vcf2genomicsdb_init +[ 90%] Built target genomicsdbjni +[ 90%] Built target vcf2genomicsdb make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build'. +make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/ctests.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' -[ 99%] Built target test_genomicsdb_importer -[100%] Built target test_genomicsdb_bcf_generator +[ 91%] Built target test_genomicsdb_bcf_generator +[ 92%] Built target vcf_histogram +[ 93%] Built target vcfdiff +[ 94%] Built target test_genomicsdb_importer +[ 95%] Built target gt_mpi_gather +[100%] Built target ctests make[3]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' @@ -9512,15 +9548,15 @@ ERROR StatusLogger Reconfiguration failed: No configuration found for '639fee48' at 'null' in 'null' GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.004886434,Cpu time(s),0.004886547 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.005895533,Cpu time(s),0.002629444 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),7.86633E-4,Cpu time(s),7.850530000000001E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),5.61514E-4,Cpu time(s),5.62715E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),8.12099E-4,Cpu time(s),8.295959999999999E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),5.13457E-4,Cpu time(s),5.18523E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.07858E-4,Cpu time(s),3.60017E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.025170867,Cpu time(s),8.97539E-4 -[INFO] Tests run: 46, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 33.156 s - in TestSuite +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.003916121,Cpu time(s),0.003941005 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.0016257460000000002,Cpu time(s),0.001636407 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),5.20108E-4,Cpu time(s),6.01572E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.31153E-4,Cpu time(s),4.9704E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),8.994620000000001E-4,Cpu time(s),8.79158E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),2.99863E-4,Cpu time(s),3.07991E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),2.96666E-4,Cpu time(s),3.05458E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.51661E-4,Cpu time(s),4.3827199999999997E-4 +[INFO] Tests run: 46, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.029 s - in TestSuite [INFO] [INFO] Results: [INFO] @@ -9529,8 +9565,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 01:32 min -[INFO] Finished at: 2025-02-17T12:46:58-12:00 +[INFO] Total time: 49.124 s +[INFO] Finished at: 2026-03-23T21:23:16+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4' create-stamp debian/debhelper-build-stamp @@ -9559,15 +9595,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 1.924 s -[INFO] Finished at: 2025-02-17T12:47:08-12:00 +[INFO] Total time: 0.884 s +[INFO] Finished at: 2026-03-23T21:23:23+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibgenomicsdb-java --base-directory=/build/reproducible-path/genomicsdb-1.5.4 --non-explore Analysing pom.xml... mh_unpatchpoms -plibgenomicsdb-java make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4' dh_auto_install -O--buildsystem=cmake -Nlibgenomicsdb-java - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/genomicsdb-1.5.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/genomicsdb-1.5.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.4 -B/build/reproducible-path/genomicsdb-1.5.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -9579,33 +9615,33 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/klist.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hfile.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/ksort.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/thread_pool.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_defs.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kfunc.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/khash.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/klist.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/vcfutils.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_log.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/vcf_sweep.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/faidx.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/synced_bcf_reader.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kseq.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kbitset.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_endian.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/knetfile.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/vcf.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/cram.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kroundup.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/vcfutils.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_defs.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/tbx.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kfunc.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/cram.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/faidx.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_log.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/sam.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_endian.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kstring.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/vcf_sweep.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hfile.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/khash_str2int.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/regidx.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/bgzf.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/ksort.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/vcf.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_os.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kseq.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kstring.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/khash_str2int.h --- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/thread_pool.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/sam.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/kbitset.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/htslib/hts_os.h -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.a -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.so -- Installing: /build/reproducible-path/genomicsdb-1.5.4/debian/tmp/usr/include/genomicsdb/tiledb/tiledb.h @@ -9652,7 +9688,7 @@ /build/reproducible-path/genomicsdb-1.5.4/debian/libgenomicsdb-jni/usr/lib/jni/libgenomicsdbjni.so: new RUNPATH: /usr/lib/x86_64-linux-gnu/genomicsdb make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4' jh_installjavadoc -O--buildsystem=cmake -Duplicate specification "A" for option "A" +Duplicate specification "author|A=s" for option "A" dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake @@ -9663,7 +9699,7 @@ dh_link -O--buildsystem=cmake jh_installlibs -O--buildsystem=cmake jh_classpath -O--buildsystem=cmake -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" jh_manifest -O--buildsystem=cmake Duplicate specification "V:s" for option "V" jh_exec -O--buildsystem=cmake @@ -9691,34 +9727,34 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' -dpkg-shlibdeps: warning: debian/libgenomicsdb1/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so contains an unresolvable reference to symbol inflateInit2_: it's probably a plugin -dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged +dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' +dpkg-shlibdeps: warning: debian/libgenomicsdb1/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so contains an unresolvable reference to symbol inflateEnd: it's probably a plugin +dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake -dpkg-gencontrol: warning: package libgenomicsdb-java: substitution variable ${maven:CompileDepends} unused, but is defined dpkg-gencontrol: warning: Depends field of package libgenomicsdb-dev: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: package libgenomicsdb-java: substitution variable ${maven:CompileDepends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'genomicsdb-tools-dbgsym' in '../genomicsdb-tools-dbgsym_1.5.4-5_amd64.deb'. -dpkg-deb: building package 'libgenomicsdb1' in '../libgenomicsdb1_1.5.4-5_amd64.deb'. -dpkg-deb: building package 'libgenomicsdb-jni-dbgsym' in '../libgenomicsdb-jni-dbgsym_1.5.4-5_amd64.deb'. dpkg-deb: building package 'libgenomicsdb-java' in '../libgenomicsdb-java_1.5.4-5_all.deb'. +dpkg-deb: building package 'libgenomicsdb-jni' in '../libgenomicsdb-jni_1.5.4-5_amd64.deb'. +dpkg-deb: building package 'libgenomicsdb-jni-dbgsym' in '../libgenomicsdb-jni-dbgsym_1.5.4-5_amd64.deb'. dpkg-deb: building package 'genomicsdb-tools' in '../genomicsdb-tools_1.5.4-5_amd64.deb'. +dpkg-deb: building package 'genomicsdb-tools-dbgsym' in '../genomicsdb-tools-dbgsym_1.5.4-5_amd64.deb'. +dpkg-deb: building package 'libgenomicsdb1' in '../libgenomicsdb1_1.5.4-5_amd64.deb'. dpkg-deb: building package 'libgenomicsdb1-dbgsym' in '../libgenomicsdb1-dbgsym_1.5.4-5_amd64.deb'. -dpkg-deb: building package 'libgenomicsdb-jni' in '../libgenomicsdb-jni_1.5.4-5_amd64.deb'. dpkg-deb: building package 'libgenomicsdb-dev' in '../libgenomicsdb-dev_1.5.4-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../genomicsdb_1.5.4-5_amd64.buildinfo dpkg-genchanges --build=binary -O../genomicsdb_1.5.4-5_amd64.changes @@ -9727,12 +9763,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2501261/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/842768 and its subdirectories -I: Current time: Mon Feb 17 12:51:22 -12 2025 -I: pbuilder-time-stamp: 1739839882 +I: removing directory /srv/workspace/pbuilder/2501261 and its subdirectories +I: Current time: Mon Mar 23 21:25:19 +14 2026 +I: pbuilder-time-stamp: 1774250719