Diff of the two buildlogs: -- --- b1/build.log 2025-09-05 18:25:57.879749197 +0000 +++ b2/build.log 2025-09-05 18:29:53.416039826 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Sep 5 06:24:02 -12 2025 -I: pbuilder-time-stamp: 1757096642 +I: Current time: Fri Oct 9 14:48:59 +14 2026 +I: pbuilder-time-stamp: 1791506939 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying trim-file-prefix.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2184480/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 9 00:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a3df2d82db384edab36df6f5790cea2a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2184480' - PS1='# ' - PS2='> ' + INVOCATION_ID=03bc059c62564e158ed961a18d3a6d50 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1713072 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sO7JI0CD/pbuilderrc_9jdU --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sO7JI0CD/b1 --logfile b1/build.log htslib_1.22.1+ds2-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sO7JI0CD/pbuilderrc_vcHh --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sO7JI0CD/b2 --logfile b2/build.log htslib_1.22.1+ds2-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.41+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2184480/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -217,7 +249,7 @@ Get: 90 http://deb.debian.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libhtscodecs-dev amd64 1.6.1-2 [3000 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] -Fetched 31.9 MB in 1s (44.9 MB/s) +Fetched 31.9 MB in 0s (70.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -600,7 +632,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/htslib-1.22.1+ds2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../htslib_1.22.1+ds2-1_source.changes +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/htslib-1.22.1+ds2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../htslib_1.22.1+ds2-1_source.changes dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.22.1+ds2-1 dpkg-buildpackage: info: source distribution unstable @@ -611,7 +647,7 @@ debian/rules clean dh clean dh_auto_clean - make -j12 distclean + make -j16 distclean make[1]: Entering directory '/build/reproducible-path/htslib-1.22.1+ds2' rm -f test/*.tmp test/*.tmp.* test/faidx/*.tmp* \ test/longrefs/*.tmp.* test/ref_cache/*.tmp.* test/tabix/*.tmp.* \ @@ -782,7 +818,7 @@ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ PACKAGE_VERSION="1.22.1" \ libdir=/usr/lib/x86_64-linux-gnu - make -j12 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.22.1 libdir=/usr/lib/x86_64-linux-gnu + make -j16 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.22.1 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.22.1+ds2' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c @@ -980,7 +1016,7 @@ if find . -name "FAIL*" > /dev/null ; then \ for file in $(find . -name "FAIL*"); do echo ${file}; cat ${file}; done && false ; \ fi - make -j12 test "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.22.1 libdir=/usr/lib/x86_64-linux-gnu + make -j16 test "TESTSUITEFLAGS=-j16 --verbose" VERBOSE=1 "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.22.1 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.22.1+ds2' test/hts_endian test/test_expr @@ -1235,203 +1271,203 @@ bgzip --output 4 threads: .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -b -m 14 -x /tmp/ax3Ascz1LR/index.bam.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -b -m 14 -x /tmp/44AEJrWv9W/index.bam.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -b -m 0 -x /tmp/ax3Ascz1LR/index.bam.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -b -m 0 -x /tmp/44AEJrWv9W/index.bam.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 14 -x /tmp/ax3Ascz1LR/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 14 -x /tmp/44AEJrWv9W/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 0 -x /tmp/ax3Ascz1LR/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 0 -x /tmp/44AEJrWv9W/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 14 -x /tmp/ax3Ascz1LR/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 14 -x /tmp/44AEJrWv9W/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 0 -x /tmp/ax3Ascz1LR/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 0 -x /tmp/44AEJrWv9W/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -C -x /tmp/ax3Ascz1LR/index.cram.crai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.cram + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -C -x /tmp/44AEJrWv9W/index.cram.crai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index /tmp/ax3Ascz1LR/index.cram + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index /tmp/44AEJrWv9W/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -b -m 14 -x /tmp/ax3Ascz1LR/index.bcf.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/ax3Ascz1LR/index.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -b -m 14 -x /tmp/44AEJrWv9W/index.bcf.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/44AEJrWv9W/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 14 -x /tmp/ax3Ascz1LR/index.vcf.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 14 -x /tmp/44AEJrWv9W/index.vcf.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 0 -x /tmp/ax3Ascz1LR/index.vcf.gz.tbi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -l 0 -z -m 0 -x /tmp/44AEJrWv9W/index.vcf.gz.tbi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -t /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -t /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/tabix /tmp/ax3Ascz1LR/index.vcf.gz##idx##/tmp/ax3Ascz1LR/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.22.1+ds2/tabix /tmp/44AEJrWv9W/index.vcf.gz##idx##/tmp/44AEJrWv9W/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 2:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -b -m 14 -x /tmp/ax3Ascz1LR/index.bam.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -b -m 14 -x /tmp/44AEJrWv9W/index.bam.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -b -m 0 -x /tmp/ax3Ascz1LR/index.bam.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -b -m 0 -x /tmp/44AEJrWv9W/index.bam.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/ax3Ascz1LR/index.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/44AEJrWv9W/index.bam .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 14 -x /tmp/ax3Ascz1LR/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 14 -x /tmp/44AEJrWv9W/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 0 -x /tmp/ax3Ascz1LR/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 0 -x /tmp/44AEJrWv9W/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 14 -x /tmp/ax3Ascz1LR/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 14 -x /tmp/44AEJrWv9W/index.sam.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 0 -x /tmp/ax3Ascz1LR/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 0 -x /tmp/44AEJrWv9W/index.sam.gz.bai /build/reproducible-path/htslib-1.22.1+ds2/test/index_dos.sam > /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/ax3Ascz1LR/index.sam.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -b /tmp/44AEJrWv9W/index.sam.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -C -x /tmp/ax3Ascz1LR/index.cram.crai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/ax3Ascz1LR/index.cram + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -C -x /tmp/44AEJrWv9W/index.cram.crai /build/reproducible-path/htslib-1.22.1+ds2/test/index.sam > /tmp/44AEJrWv9W/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index /tmp/ax3Ascz1LR/index.cram + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index /tmp/44AEJrWv9W/index.cram .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -b -m 14 -x /tmp/ax3Ascz1LR/index.bcf.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/ax3Ascz1LR/index.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -b -m 14 -x /tmp/44AEJrWv9W/index.bcf.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/44AEJrWv9W/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.bcf .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 14 -x /tmp/ax3Ascz1LR/index.vcf.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 14 -x /tmp/44AEJrWv9W/index.vcf.gz.csi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -c /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 0 -x /tmp/ax3Ascz1LR/index.vcf.gz.tbi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -@4 -l 0 -z -m 0 -x /tmp/44AEJrWv9W/index.vcf.gz.tbi /build/reproducible-path/htslib-1.22.1+ds2/test/index.vcf > /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -t /tmp/ax3Ascz1LR/index.vcf.gz + /build/reproducible-path/htslib-1.22.1+ds2/test/test_index -t /tmp/44AEJrWv9W/index.vcf.gz .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/tabix /tmp/ax3Ascz1LR/index.vcf.gz##idx##/tmp/ax3Ascz1LR/index.vcf.gz.tbi 1:10000060-10000060 + /build/reproducible-path/htslib-1.22.1+ds2/tabix /tmp/44AEJrWv9W/index.vcf.gz##idx##/tmp/44AEJrWv9W/index.vcf.gz.tbi 1:10000060-10000060 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 1:1000000-1000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 1:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 1:2000000-2000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 1:2000000-2000000 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 2:1000000-1000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 2:1000000-1000000 .. ok test_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/ax3Ascz1LR/index2.bam 2:2000000-2000000 + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view /tmp/44AEJrWv9W/index2.bam 2:2000000-2000000 .. ok test_view testing multi-ref CRAM modes: @@ -2686,7 +2722,7 @@ .. ok test_vcf_api: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-vcf-api /tmp/ax3Ascz1LR/test-vcf-api.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-vcf-api /tmp/44AEJrWv9W/test-vcf-api.bcf .. ok test_bcf2vcf: @@ -2694,7 +2730,7 @@ .. ok test_vcf_sweep: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-vcf-sweep /tmp/ax3Ascz1LR/test-vcf-api.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-vcf-sweep /tmp/44AEJrWv9W/test-vcf-api.bcf .. ok test_vcf_various: @@ -2726,169 +2762,169 @@ .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 74452500 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 74452500 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 34270147 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 34270147 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 11108528 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 11108528 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 42233895 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 42233895 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 8111117 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 8111117 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 85644070 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 85644070 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 49879942 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 49879942 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 47881429 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 47881429 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 69081244 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 69081244 .. ok test-bcf-sr: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/ax3Ascz1LR -s 83459376 + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr.pl -t /tmp/44AEJrWv9W -s 83459376 .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/ax3Ascz1LR/no_index_1.err + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.b.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/44AEJrWv9W/no_index_1.err .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/ax3Ascz1LR/no_index_2.out 2> /tmp/ax3Ascz1LR/no_index_2.err (expected fail) + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/44AEJrWv9W/no_index_2.out 2> /tmp/44AEJrWv9W/no_index_2.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/ax3Ascz1LR/no_index_3.out 2> /tmp/ax3Ascz1LR/no_index_3.err (expected fail) + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/44AEJrWv9W/no_index_3.out 2> /tmp/44AEJrWv9W/no_index_3.err (expected fail) .. ok test_bcf_sr_no_index: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf > /tmp/ax3Ascz1LR/no_index_4.out 2> /tmp/ax3Ascz1LR/no_index_4.err (expected fail) + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr --no-index -p all --args /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.rec_order.vcf /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/merge.noidx.a.vcf > /tmp/44AEJrWv9W/no_index_4.out 2> /tmp/44AEJrWv9W/no_index_4.err (expected fail) .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -b -p /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf -x /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/weird-chr-names.vcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -b -p /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf -x /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf.csi /build/reproducible-path/htslib-1.22.1+ds2/test/bcf-sr/weird-chr-names.vcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_1.out.vcf -r '1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_1.out.vcf -r '1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_2.out.vcf -r '1:1-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_2.out.vcf -r '1:1-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_4.out.vcf -r '1:1-1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_4.out.vcf -r '1:1-1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_5.out.vcf -r '{1:1}' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_5.out.vcf -r '{1:1}' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set regions .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_14.out.vcf -t '1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_14.out.vcf -t '1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_15.out.vcf -t '1:1-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_15.out.vcf -t '1:1-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_17.out.vcf -t '1:1-1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_17.out.vcf -t '1:1-1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_18.out.vcf -t '{1:1}' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_18.out.vcf -t '{1:1}' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf .. ok test_bcf_sr_range: - /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/ax3Ascz1LR/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/ax3Ascz1LR/weird-chr-names.vcf.bcf (expected fail) + /build/reproducible-path/htslib-1.22.1+ds2/test/test-bcf-sr -O vcf -o /tmp/44AEJrWv9W/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/44AEJrWv9W/weird-chr-names.vcf.bcf (expected fail) [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 Failed to set targets .. ok @@ -2900,15 +2936,15 @@ .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -t ce.fa -C /tmp/ax3Ascz1LR/headernul0.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -t ce.fa -C /tmp/44AEJrWv9W/headernul0.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -t ce.fa -C /tmp/ax3Ascz1LR/headernul1.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -t ce.fa -C /tmp/44AEJrWv9W/headernul1.bam .. ok test_convert_padded_header: - /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -t ce.fa -C /tmp/ax3Ascz1LR/headernul678.bam + /build/reproducible-path/htslib-1.22.1+ds2/test/test_view -t ce.fa -C /tmp/44AEJrWv9W/headernul678.bam .. ok test_rebgzip: Alternate zlib/deflate library detected @@ -3501,7 +3537,7 @@ failed .. 0 make[2]: Leaving directory '/build/reproducible-path/htslib-1.22.1+ds2' - rm -fr -- /tmp/dh-xdg-rundir-adL3Lns1 + rm -fr -- /tmp/dh-xdg-rundir-92UMr2Hh make[1]: Leaving directory '/build/reproducible-path/htslib-1.22.1+ds2' rm -f debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules override_dh_auto_test-indep @@ -3524,7 +3560,7 @@ PACKAGE_VERSION="1.22.1" \ libdir=/usr/lib/x86_64-linux-gnu install -m0755 -d /build/reproducible-path/htslib-1.22.1\+ds2/debian/tmp - make -j12 install DESTDIR=/build/reproducible-path/htslib-1.22.1\+ds2/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.22.1 libdir=/usr/lib/x86_64-linux-gnu + make -j16 install DESTDIR=/build/reproducible-path/htslib-1.22.1\+ds2/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/htslib-1.22.1+ds2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -ffat-lto-objects -ffat-lto-objects" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" PACKAGE_VERSION=1.22.1 libdir=/usr/lib/x86_64-linux-gnu make[2]: Entering directory '/build/reproducible-path/htslib-1.22.1+ds2' mkdir -p -m 755 /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/bin /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/include /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/include/htslib /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/lib/x86_64-linux-gnu /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/share/man/man1 /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/share/man/man5 /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/share/man/man7 /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig if test -n "/usr/lib/x86_64-linux-gnu/htslib"; then mkdir -p -m 755 /build/reproducible-path/htslib-1.22.1+ds2/debian/tmp/usr/lib/x86_64-linux-gnu/htslib; fi @@ -3604,9 +3640,6 @@ debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/htslib-1.22.1+ds2' dh_installchangelogs NEWS - install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 - install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian - install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog install -m0755 -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/.debhelper/generated/libhts-dev/dh_installchangelogs.dch.trimmed debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog @@ -3616,6 +3649,9 @@ install -m0755 -d debian/htslib-test/usr/share/doc/htslib-test install -p -m0644 debian/.debhelper/generated/htslib-test/dh_installchangelogs.dch.trimmed debian/htslib-test/usr/share/doc/htslib-test/changelog.Debian install -p -m0644 NEWS debian/htslib-test/usr/share/doc/htslib-test/changelog + install -m0755 -d debian/libhts3t64/usr/share/doc/libhts3t64 + install -p -m0644 debian/.debhelper/generated/libhts3t64/dh_installchangelogs.dch.trimmed debian/libhts3t64/usr/share/doc/libhts3t64/changelog.Debian + install -p -m0644 NEWS debian/libhts3t64/usr/share/doc/libhts3t64/changelog make[1]: Leaving directory '/build/reproducible-path/htslib-1.22.1+ds2' dh_installman install -m0755 -d debian/libhts3t64/usr/share/man/man7/ @@ -3635,18 +3671,18 @@ man-recode --to-code UTF-8 --suffix .dh-new debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man5/sam.5.dh-new debian/libhts3t64/usr/share/man/man5/sam.5 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/sam.5 + mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 + chmod 0644 -- debian/libhts3t64/usr/share/man/man5/vcf.5 + mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 + chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 mv debian/libhts3t64/usr/share/man/man5/faidx.5.dh-new debian/libhts3t64/usr/share/man/man5/faidx.5 chmod 0644 -- debian/libhts3t64/usr/share/man/man5/faidx.5 mv debian/tabix/usr/share/man/man1/htsfile.1.dh-new debian/tabix/usr/share/man/man1/htsfile.1 chmod 0644 -- debian/tabix/usr/share/man/man1/htsfile.1 - mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 - chmod 0644 -- debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 mv debian/tabix/usr/share/man/man1/bgzip.1.dh-new debian/tabix/usr/share/man/man1/bgzip.1 chmod 0644 -- debian/tabix/usr/share/man/man1/bgzip.1 - mv debian/libhts3t64/usr/share/man/man5/vcf.5.dh-new debian/libhts3t64/usr/share/man/man5/vcf.5 - chmod 0644 -- debian/libhts3t64/usr/share/man/man5/vcf.5 - mv debian/tabix/usr/share/man/man1/tabix.1.dh-new debian/tabix/usr/share/man/man1/tabix.1 - chmod 0644 -- debian/tabix/usr/share/man/man1/tabix.1 + mv debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7.dh-new debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 + chmod 0644 -- debian/libhts3t64/usr/share/man/man7/htslib-s3-plugin.7 dh_lintian install -m0755 -d debian/libhts-dev/usr/share/lintian/overrides install -p -m0644 debian/libhts-dev.lintian-overrides debian/libhts-dev/usr/share/lintian/overrides/libhts-dev @@ -3666,21 +3702,21 @@ ln -s tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism Using 1756986990 as canonical time - Normalizing debian/htslib-test/usr/share/htslib-test/test/bgziptest.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/htslib-test/usr/share/htslib-test/test/modhdr.vcf.gz using File::StripNondeterminism::handlers::gzip + Normalizing debian/htslib-test/usr/share/htslib-test/test/bgziptest.txt.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/libhts3t64 cd debian/libhts-dev cd debian/htslib-test cd debian/tabix - chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 chmod a-x usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian chmod a-x usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian - gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 + chmod a-x usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/bgzip.1 usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 - gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian gzip -9nf usr/share/doc/htslib-test/changelog usr/share/doc/htslib-test/changelog.Debian + gzip -9nf usr/share/doc/libhts-dev/README.large_positions.md usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian + gzip -9nf usr/share/doc/libhts3t64/changelog usr/share/doc/libhts3t64/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 usr/share/man/man7/htslib-s3-plugin.7 cd '/build/reproducible-path/htslib-1.22.1+ds2' cd '/build/reproducible-path/htslib-1.22.1+ds2' cd '/build/reproducible-path/htslib-1.22.1+ds2' @@ -3691,23 +3727,23 @@ find debian/htslib-test ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts3t64/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts3t64/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/htslib-test/usr/share/doc -type f -a -true -a ! -regex 'debian/htslib-test/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libhts-dev/usr/include debian/libhts-dev/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts3t64/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/htslib-test/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libhts-dev/usr/include debian/libhts-dev/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/tabix/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/htslib-test/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3t64 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x - find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/htslib-test -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libhts3t64/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w rm -f debian/htslib-test.debhelper.log debian/libhts-dev.debhelper.log debian/libhts3t64.debhelper.log debian/tabix.debhelper.log debian/rules execute_after_dh_fixperms @@ -3736,36 +3772,36 @@ dh_strip -Xlibhts.a install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/fe objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/x86_64-linux-gnu/libhts.so.1.22.1 debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/fe/9d34c64857c8eb8aae76397008502228226f6e.debug - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23/9b3d4156146fbf095906449c9d04dd57ba16c3.debug - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23/9b3d4156146fbf095906449c9d04dd57ba16c3.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23/9b3d4156146fbf095906449c9d04dd57ba16c3.debug debian/tabix/usr/bin/tabix + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/ffd7cbbcd2d61a7f40f447e2614022066ba918.debug + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/ffd7cbbcd2d61a7f40f447e2614022066ba918.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/ffd7cbbcd2d61a7f40f447e2614022066ba918.debug debian/tabix/usr/bin/htsfile chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/fe/9d34c64857c8eb8aae76397008502228226f6e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/x86_64-linux-gnu/libhts.so.1.22.1 objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/fe/9d34c64857c8eb8aae76397008502228226f6e.debug debian/libhts3t64/usr/lib/x86_64-linux-gnu/libhts.so.1.22.1 - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5 - objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/ffd7cbbcd2d61a7f40f447e2614022066ba918.debug - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a/0ed7080c616be0bc81ddaf6613900b8f8654e2.debug - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a/0ed7080c616be0bc81ddaf6613900b8f8654e2.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a/0ed7080c616be0bc81ddaf6613900b8f8654e2.debug debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23 + objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23/9b3d4156146fbf095906449c9d04dd57ba16c3.debug + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1 + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1/ca0d90e5b239add83dbe228e1cbb42fa5b5087.debug + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1/ca0d90e5b239add83dbe228e1cbb42fa5b5087.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1/ca0d90e5b239add83dbe228e1cbb42fa5b5087.debug debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1f/142e9d39b952648237854db418821852c6ed4a.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1f/142e9d39b952648237854db418821852c6ed4a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/1f/142e9d39b952648237854db418821852c6ed4a.debug debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so + install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a + objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a/0ed7080c616be0bc81ddaf6613900b8f8654e2.debug + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a/0ed7080c616be0bc81ddaf6613900b8f8654e2.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so + objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/7a/0ed7080c616be0bc81ddaf6613900b8f8654e2.debug debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/6b/0601ee8c94ce3dbe85103308eb19f8104a03e4.debug chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/6b/0601ee8c94ce3dbe85103308eb19f8104a03e4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/6b/0601ee8c94ce3dbe85103308eb19f8104a03e4.debug debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so - install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1 - objcopy --only-keep-debug --compress-debug-sections debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1/ca0d90e5b239add83dbe228e1cbb42fa5b5087.debug - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1/ca0d90e5b239add83dbe228e1cbb42fa5b5087.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so - objcopy --add-gnu-debuglink debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.build-id/d1/ca0d90e5b239add83dbe228e1cbb42fa5b5087.debug debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhts3t64/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libhts3t64/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhts3t64/usr/lib/debug/.dwz @@ -3773,9 +3809,9 @@ install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc ln -s libhts3t64 debian/.debhelper/libhts3t64/dbgsym-root/usr/share/doc/libhts3t64-dbgsym install -m0755 -d debian/.debhelper/libhts3t64 - chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/ffd7cbbcd2d61a7f40f447e2614022066ba918.debug - strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile - objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/b5/ffd7cbbcd2d61a7f40f447e2614022066ba918.debug debian/tabix/usr/bin/htsfile + chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23/9b3d4156146fbf095906449c9d04dd57ba16c3.debug + strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix + objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/23/9b3d4156146fbf095906449c9d04dd57ba16c3.debug debian/tabix/usr/bin/tabix install -m0755 -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/6a/a7d2e5616af5f0dbe4447722707c43cb98a2ae.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/6a/a7d2e5616af5f0dbe4447722707c43cb98a2ae.debug @@ -3801,9 +3837,9 @@ rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/tabix/DEBIAN - dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip + dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/tabix debian/tabix/usr/bin/bgzip install -m0755 -d debian/libhts3t64/DEBIAN - dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/x86_64-linux-gnu/libhts.so.1.22.1 debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so + dpkg-shlibdeps -Tdebian/libhts3t64.substvars debian/libhts3t64/usr/lib/x86_64-linux-gnu/libhts.so.1.22.1 debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_gcs.so debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3_write.so debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_s3.so debian/libhts3t64/usr/lib/x86_64-linux-gnu/htslib/hfile_libcurl.so dh_installdeb install -m0755 -d debian/libhts3t64/DEBIAN install -p -m0644 debian/.debhelper/generated/libhts3t64/triggers debian/libhts3t64/DEBIAN/triggers @@ -3811,6 +3847,15 @@ install -m0755 -d debian/htslib-test/DEBIAN install -m0755 -d debian/tabix/DEBIAN dh_gencontrol + install -m0755 -d debian/tabix/DEBIAN + echo misc:Depends= >> debian/tabix.substvars + echo misc:Pre-Depends= >> debian/tabix.substvars + install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN + dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=239b3d4156146fbf095906449c9d04dd57ba16c3 6aa7d2e5616af5f0dbe4447722707c43cb98a2ae b5ffd7cbbcd2d61a7f40f447e2614022066ba918" -DSection=debug -UMulti-Arch -UReplaces -UBreaks + install -m0755 -d debian/libhts-dev/DEBIAN + echo misc:Depends= >> debian/libhts-dev.substvars + echo misc:Pre-Depends= >> debian/libhts-dev.substvars + dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev install -m0755 -d debian/htslib-test/DEBIAN echo misc:Depends= >> debian/htslib-test.substvars echo misc:Pre-Depends= >> debian/htslib-test.substvars @@ -3820,28 +3865,19 @@ echo misc:Pre-Depends= >> debian/libhts3t64.substvars install -m0755 -d debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/.debhelper/libhts3t64/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libhts3t64-dbgsym "-DDepends=libhts3t64 (= \${binary:Version})" "-DDescription=debug symbols for libhts3t64" "-DBuild-Ids=1f142e9d39b952648237854db418821852c6ed4a 6b0601ee8c94ce3dbe85103308eb19f8104a03e4 7a0ed7080c616be0bc81ddaf6613900b8f8654e2 d1ca0d90e5b239add83dbe228e1cbb42fa5b5087 fe9d34c64857c8eb8aae76397008502228226f6e" -DSection=debug -UReplaces -UBreaks - install -m0755 -d debian/libhts-dev/DEBIAN - echo misc:Depends= >> debian/libhts-dev.substvars - echo misc:Pre-Depends= >> debian/libhts-dev.substvars - dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -cdebian/control -Pdebian/libhts-dev - install -m0755 -d debian/tabix/DEBIAN - echo misc:Depends= >> debian/tabix.substvars - echo misc:Pre-Depends= >> debian/tabix.substvars - install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN - dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=debug symbols for tabix" "-DBuild-Ids=239b3d4156146fbf095906449c9d04dd57ba16c3 6aa7d2e5616af5f0dbe4447722707c43cb98a2ae b5ffd7cbbcd2d61a7f40f447e2614022066ba918" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - chmod 0644 -- debian/libhts-dev/DEBIAN/control - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control - dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -cdebian/control -Pdebian/tabix + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/control + dpkg-gencontrol -plibhts3t64 -ldebian/changelog -Tdebian/libhts3t64.substvars -cdebian/control -Pdebian/libhts3t64 + chmod 0644 -- debian/libhts-dev/DEBIAN/control chmod 0644 -- debian/htslib-test/DEBIAN/control - chmod 0644 -- debian/libhts3t64/DEBIAN/control chmod 0644 -- debian/tabix/DEBIAN/control + chmod 0644 -- debian/libhts3t64/DEBIAN/control dh_md5sums install -m0755 -d debian/libhts3t64/DEBIAN install -m0755 -d debian/libhts-dev/DEBIAN - install -m0755 -d debian/htslib-test/DEBIAN install -m0755 -d debian/tabix/DEBIAN + install -m0755 -d debian/htslib-test/DEBIAN cd debian/libhts3t64 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhts-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/tabix >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums @@ -3852,8 +3888,8 @@ chmod 0644 -- debian/tabix/DEBIAN/md5sums install -m0755 -d debian/.debhelper/tabix/dbgsym-root/DEBIAN cd debian/.debhelper/tabix/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums + chmod 0644 -- debian/.debhelper/libhts3t64/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/htslib-test/DEBIAN/md5sums dh_builddeb @@ -3877,12 +3913,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1713072/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2184480 and its subdirectories -I: Current time: Fri Sep 5 06:25:57 -12 2025 -I: pbuilder-time-stamp: 1757096757 +I: removing directory /srv/workspace/pbuilder/1713072 and its subdirectories +I: Current time: Fri Oct 9 14:52:52 +14 2026 +I: pbuilder-time-stamp: 1791507172