Diff of the two buildlogs: -- --- b1/build.log 2025-02-28 11:20:00.149226216 +0000 +++ b2/build.log 2025-02-28 11:25:04.971465199 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Feb 27 23:13:28 -12 2025 -I: pbuilder-time-stamp: 1740741208 +I: Current time: Fri Apr 3 07:43:03 +14 2026 +I: pbuilder-time-stamp: 1775151783 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -32,51 +32,83 @@ dpkg-source: info: applying omit_blat_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/990198/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 2 17:43 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7a6b0ffdf9534589b365be0cb043772c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='990198' - PS1='# ' - PS2='> ' + INVOCATION_ID=14d585122d1249889ee82a6e470d3fd5 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3490409 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ui2rWk7n/pbuilderrc_axkW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ui2rWk7n/b1 --logfile b1/build.log igv_2.18.5+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ui2rWk7n/pbuilderrc_3Wzi --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ui2rWk7n/b2 --logfile b2/build.log igv_2.18.5+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/990198/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -647,7 +679,7 @@ Get: 473 http://deb.debian.org/debian unstable/main amd64 libprotobuf-java all 3.21.12-10 [1268 kB] Get: 474 http://deb.debian.org/debian unstable/main amd64 libswing-layout-java all 1.0.4-4.1 [44.4 kB] Get: 475 http://deb.debian.org/debian unstable/main amd64 openjfx amd64 11.0.11+1-6 [6948 B] -Fetched 459 MB in 6s (77.1 MB/s) +Fetched 459 MB in 8s (56.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19779 files and directories currently installed.) @@ -2204,8 +2236,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Feb 28 11:17:18 UTC 2025. -Universal Time is now: Fri Feb 28 11:17:18 UTC 2025. +Local time is now: Thu Apr 2 17:46:30 UTC 2026. +Universal Time is now: Thu Apr 2 17:46:30 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2811,7 +2843,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/igv-2.18.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../igv_2.18.5+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/igv-2.18.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../igv_2.18.5+dfsg-1_source.changes dpkg-buildpackage: info: source package igv dpkg-buildpackage: info: source version 2.18.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2827,7 +2863,7 @@ dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle Duplicate specification "u=s" for option "u" -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/igv-2.18.5+dfsg' if [ -e src/main/resources/log4j.xml ] ; then rm src/main/resources/log4j.xml ; fi @@ -2854,79 +2890,79 @@ mkdir ../../src/main/resources-icons && \ mv *.png ../../src/main/resources-icons/ -** (process:1072736): WARNING **: 23:19:23.310: Unable to create profile directory (Permission denied) (13) -** Message: 23:19:23.316: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 23:19:23.316: Inkscape will run with default settings, and new settings will not be saved. +** (process:3520505): WARNING **: 07:47:17.153: Unable to create profile directory (Permission denied) (13) +** Message: 07:47:17.162: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 07:47:17.162: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:1072736): WARNING **: 23:19:23.439: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3520505): WARNING **: 07:47:17.299: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:1072736): WARNING **: 23:19:23.439: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3520505): WARNING **: 07:47:17.299: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:1072736): Gtk-CRITICAL **: 23:19:23.464: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3520505): Gtk-CRITICAL **: 07:47:17.338: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:1072736): WARNING **: 23:19:23.464: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3520505): WARNING **: 07:47:17.338: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:1072752): WARNING **: 23:19:23.536: Unable to create profile directory (Permission denied) (13) -** Message: 23:19:23.541: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 23:19:23.542: Inkscape will run with default settings, and new settings will not be saved. +** (process:3520544): WARNING **: 07:47:17.425: Unable to create profile directory (Permission denied) (13) +** Message: 07:47:17.434: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 07:47:17.434: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:1072752): WARNING **: 23:19:23.631: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3520544): WARNING **: 07:47:17.575: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:1072752): WARNING **: 23:19:23.631: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3520544): WARNING **: 07:47:17.575: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:1072752): Gtk-CRITICAL **: 23:19:23.656: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3520544): Gtk-CRITICAL **: 07:47:17.614: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:1072752): WARNING **: 23:19:23.656: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3520544): WARNING **: 07:47:17.614: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:1072769): WARNING **: 23:19:23.721: Unable to create profile directory (Permission denied) (13) -** Message: 23:19:23.727: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 23:19:23.727: Inkscape will run with default settings, and new settings will not be saved. +** (process:3520556): WARNING **: 07:47:17.710: Unable to create profile directory (Permission denied) (13) +** Message: 07:47:17.719: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 07:47:17.719: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:1072769): WARNING **: 23:19:23.812: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3520556): WARNING **: 07:47:17.851: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:1072769): WARNING **: 23:19:23.812: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3520556): WARNING **: 07:47:17.851: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:1072769): Gtk-CRITICAL **: 23:19:23.835: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3520556): Gtk-CRITICAL **: 07:47:17.887: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:1072769): WARNING **: 23:19:23.835: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3520556): WARNING **: 07:47:17.887: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:1072790): WARNING **: 23:19:23.902: Unable to create profile directory (Permission denied) (13) -** Message: 23:19:23.908: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 23:19:23.908: Inkscape will run with default settings, and new settings will not be saved. +** (process:3520563): WARNING **: 07:47:17.986: Unable to create profile directory (Permission denied) (13) +** Message: 07:47:17.995: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 07:47:17.995: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:1072790): WARNING **: 23:19:23.995: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3520563): WARNING **: 07:47:18.130: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:1072790): WARNING **: 23:19:23.995: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3520563): WARNING **: 07:47:18.130: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:1072790): Gtk-CRITICAL **: 23:19:24.019: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3520563): Gtk-CRITICAL **: 07:47:18.165: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:1072790): WARNING **: 23:19:24.019: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3520563): WARNING **: 07:47:18.165: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:1072806): WARNING **: 23:19:24.090: Unable to create profile directory (Permission denied) (13) -** Message: 23:19:24.096: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 23:19:24.096: Inkscape will run with default settings, and new settings will not be saved. +** (process:3520592): WARNING **: 07:47:18.282: Unable to create profile directory (Permission denied) (13) +** Message: 07:47:18.292: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 07:47:18.292: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:1072806): WARNING **: 23:19:24.184: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3520592): WARNING **: 07:47:18.459: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:1072806): WARNING **: 23:19:24.184: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3520592): WARNING **: 07:47:18.459: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:1072806): Gtk-CRITICAL **: 23:19:24.207: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3520592): Gtk-CRITICAL **: 07:47:18.503: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:1072806): WARNING **: 23:19:24.207: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3520592): WARNING **: 07:47:18.503: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. make[1]: Leaving directory '/build/reproducible-path/igv-2.18.5+dfsg' jh_linkjars -O--buildsystem=gradle Duplicate specification "unlink|u" for option "u" -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ @@ -2938,18 +2974,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.555 secs. -The client will now receive all logging from the daemon (pid: 1073023). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-1073023.out.log +An attempt to start the daemon took 0.735 secs. +The client will now receive all logging from the daemon (pid: 3520758). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-3520758.out.log +Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Daemon will be stopped at the end of the build stopping after processing Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6cb02e07 -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6cb02e07 -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@427762a +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@ea9e486 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@ea9e486 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3be27692 Starting Build Compiling initialization script '/build/reproducible-path/igv-2.18.5+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@267ba2e +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@66c0143c Compiling initialization script '/build/reproducible-path/igv-2.18.5+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2966,15 +3002,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2ca57d29 +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@39f3832f Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@427762a -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@14ef3fd1 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3d1a3a9c +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3be27692 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@7460af6a +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@69eb104d :compileJava (Thread[#50,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.002 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@54c66fe +Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@23183055 Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3075,7 +3111,7 @@ at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':compileJava' took 1.579 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 2.485 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found @@ -3085,32 +3121,32 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 9.178 secs. +:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 10.831 secs. :processResources (Thread[#50,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.024 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.047 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.104 secs. +:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.159 secs. :classes (Thread[#50,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. +:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.001 secs. :debianMavenPom (Thread[#50,Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/igv-2.18.5+dfsg/build/debian/igv.pom -:debianMavenPom (Thread[#50,Task worker for ':',5,main]) completed. Took 0.047 secs. -:jar (Thread[#50,Task worker for ':',5,main]) started. +:debianMavenPom (Thread[#50,Task worker for ':',5,main]) completed. Took 0.065 secs. +:jar (Thread[#56,Task worker for ':' Thread 7,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.014 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.023 secs. It is not up-to-date because: No history is available. -:jar (Thread[#50,Task worker for ':',5,main]) completed. Took 0.654 secs. +:jar (Thread[#56,Task worker for ':' Thread 7,5,main]) completed. Took 0.617 secs. -BUILD SUCCESSFUL in 13s +BUILD SUCCESSFUL in 16s 4 actionable tasks: 4 executed jh_build -O--buildsystem=gradle dh_auto_test -O--buildsystem=gradle @@ -3124,17 +3160,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.987 secs. -The client will now receive all logging from the daemon (pid: 1074785). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-1074785.out.log +An attempt to start the daemon took 0.898 secs. +The client will now receive all logging from the daemon (pid: 3522959). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-3522959.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@19643b47 -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@19643b47 -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@47c3de4c +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1432c0b3 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1432c0b3 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4a928382 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@515aafee +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@910a50b Settings evaluated using settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/igv-2.18.5+dfsg/build.gradle'. Included projects: [root project 'igv'] @@ -3146,15 +3182,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7b646185 +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@60b57c63 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@47c3de4c -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6489141f -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@22c2ee9d -:compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4a928382 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@448f8588 +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@727deb2c +:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.002 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@24083ad +Putting task artifact state for task ':compileJava' into context took 0.003 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@71083dc9 Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3207,24 +3243,24 @@ Passing through xml-apis:xml-apis-1.4:jar:debian file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Skipping task ':compileJava' as it is up-to-date (took 0.464 secs). +Skipping task ':compileJava' as it is up-to-date (took 0.872 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.483 secs. -:processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.9 secs. +:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.023 secs). +Skipping task ':processResources' as it is up-to-date (took 0.05 secs). :processResources UP-TO-DATE -:processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.026 secs. -:classes (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.054 secs. +:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Malformed class file [SortOption.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [FrameManager$ChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3273,7 +3309,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) -Malformed class file [SupplementaryAlignment$SupplementaryNeighbors.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3322,7 +3358,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) -Malformed class file [InsertionSelectionEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [SortOption.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3371,7 +3407,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) -Malformed class file [FrameManager$ChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [SupplementaryAlignment$SupplementaryNeighbors.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3420,7 +3456,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) -Malformed class file [AlignmentTrackEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [InsertionSelectionEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3567,7 +3603,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) -Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [AlignmentTrackEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3621,7 +3657,7 @@ Ignoring org.glassfish.jersey.core:jersey-common:jar:2.34 file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':compileTestJava' took 0.424 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.687 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found @@ -3631,19 +3667,19 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 2.442 secs. -:processTestResources (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 3.608 secs. +:processTestResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.003 secs. -:testClasses (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:processTestResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.012 secs. +:testClasses (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. -:test (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:testClasses (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. +:test (Thread[#51,Task worker for ':' Thread 2,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Replacing org.junit.vintage:junit-vintage-engine:jar:5.8.2 -> org.junit.vintage:junit-vintage-engine:jar:debian @@ -3653,37 +3689,125 @@ Passing through org.opentest4j:opentest4j:jar:debian Passing through org.junit.platform:junit-platform-commons:jar:debian file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':test' took 0.46 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.738 secs. It is not up-to-date because: No history is available. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found +Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.12.9+bpo-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath16041278369759580701txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-31-cloud-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath6012481891437057069txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.12.9+bpo-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath9152803433752033359txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-31-cloud-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath8008019896276805001txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-31-cloud-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath1984342572072372481txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.12.9+bpo-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath13548189168539077310txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-31-cloud-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath15611321569056566900txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' -Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-31-cloud-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath9373564438358372207txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.12.9+bpo-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath5809591783423372838txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.12.9+bpo-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath11400725290507947689txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-31-cloud-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath12433310749841495046txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' -Successfully started process 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 5' -Successfully started process 'Gradle Test Executor 3' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.12.9+bpo-amd64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath10532708663000380527txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 4' Successfully started process 'Gradle Test Executor 6' Successfully started process 'Gradle Test Executor 2' -Gradle Test Executor 1 started executing tests. -Gradle Test Executor 5 started executing tests. -Gradle Test Executor 2 started executing tests. -Gradle Test Executor 4 started executing tests. +Successfully started process 'Gradle Test Executor 3' +Successfully started process 'Gradle Test Executor 5' +Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 6 started executing tests. +Gradle Test Executor 5 started executing tests. Gradle Test Executor 3 started executing tests. +Gradle Test Executor 4 started executing tests. +Gradle Test Executor 1 started executing tests. +Gradle Test Executor 2 started executing tests. -org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED +org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED -org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED +org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED + +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED + +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED + +org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED + +org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED + +org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED + +org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED + +org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED + +org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED + +org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED + +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.feature.DataURLParserTest > testDataURL STANDARD_ERROR + Apr 03, 2026 7:47:47 AM java.util.prefs.FileSystemPreferences$1 run + INFO: Created user preferences directory. + +org.broad.igv.batch.CommandListenerTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED + +org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED + +org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED + +org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED + +org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED + +org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.ui.panel.ReferenceFrameTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED + +org.broad.igv.batch.CommandExecutorTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR + SEVERE [Apr 03,2026 07:47] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [Apr 03,2026 07:47] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float + SEVERE [Apr 03,2026 07:47] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED + +org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigWig SKIPPED + +org.broad.igv.ucsc.bb.BBDataSourceTest > testUncompressedBigwig SKIPPED + +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED + +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED + +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED +Gradle Test Executor 5 finished executing tests. + +org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED + +org.broad.igv.ucsc.bb.BBFileTest > testChromTree SKIPPED + +org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT + bam org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalBaiCram SKIPPED @@ -3695,19 +3819,46 @@ org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED -org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED +org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED -org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED +org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED +org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED +org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED +org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT + dir/test.txt +Gradle Test Executor 6 finished executing tests. -org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort: 216 -org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED +org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT + IntArrayList time: 104 + +org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED + +org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED + +org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED + +org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED +Gradle Test Executor 4 finished executing tests. + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED + +org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED +Gradle Test Executor 3 finished executing tests. + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED + +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort (reversed): 203 org.broad.igv.sam.mods.BaseModificationsTest > testOrientBotFwd STANDARD_OUT 115 @@ -3715,12 +3866,6 @@ -90 -64 -org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED - -org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts STANDARD_ERROR - Feb 27, 2025 11:19:46 PM java.util.prefs.FileSystemPreferences$1 run - INFO: Created user preferences directory. - org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 0 0 0 1 1 1 @@ -3880,6 +4025,7 @@ 155 -101 155 156 -100 156 157 -99 157 +Gradle Test Executor 1 finished executing tests. 158 -98 158 159 -97 159 160 -96 160 @@ -3979,53 +4125,16 @@ 254 -2 254 255 -1 255 -org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED - -org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED - -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED - -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED - -org.broad.igv.ucsc.bb.BBFileTest > testChromTree SKIPPED - -org.broad.igv.batch.CommandExecutorTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - -org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED - -org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED - -org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED - -org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED - -org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigWig SKIPPED - -org.broad.igv.ucsc.bb.BBDataSourceTest > testUncompressedBigwig SKIPPED - -org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED - -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - -org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED - -org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED - -org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED - -org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED +org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort (Arrays): 651 + Sorted sort: 75 + Reverse sorted sort: 81 + Almost sorted sort: 93 -org.broad.igv.batch.CommandListenerTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test -Gradle Test Executor 4 finished executing tests. +org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT + IntArrayList time: 1 org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED @@ -4033,89 +4142,18 @@ org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED -org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT - bam - -org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED - -org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED +org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED org.broad.igv.sam.BAMFileReaderTest > testQueryAgainstSam SKIPPED - -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED - -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED - -org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED - -org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED - -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Feb 27,2025 23:19] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float - SEVERE [Feb 27,2025 23:19] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float - SEVERE [Feb 27,2025 23:19] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float -Gradle Test Executor 6 finished executing tests. - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED - -org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED - -org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT - IntArrayList time: 44 - -org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort: 152 - -org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED - -org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED - -org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED Gradle Test Executor 2 finished executing tests. -Gradle Test Executor 5 finished executing tests. - -org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED - -org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED - -org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED - -org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED - -org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT - IntArrayList time: 1 - -org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT - dir/test.txt - -org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test -Gradle Test Executor 3 finished executing tests. - -org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort (reversed): 148 - Random sort (Arrays): 549 - Sorted sort: 60 - Reverse sorted sort: 67 - Almost sorted sort: 75 - -org.broad.igv.ui.panel.ReferenceFrameTestHeaded STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test -Gradle Test Executor 1 finished executing tests. -Finished generating test XML results (0.034 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/test-results/test +Finished generating test XML results (0.037 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.061 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/reports/tests/test -:test (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 2.871 secs. +Finished generating test html results (0.081 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/reports/tests/test +:test (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 4.078 secs. -BUILD SUCCESSFUL in 9s +BUILD SUCCESSFUL in 13s 4 actionable tasks: 2 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4129,7 +4167,7 @@ make[1]: Leaving directory '/build/reproducible-path/igv-2.18.5+dfsg' dh_install -O--buildsystem=gradle jh_installjavadoc -O--buildsystem=gradle -Duplicate specification "A" for option "A" +Duplicate specification "author|A=s" for option "A" Duplicate specification "A" for option "A" dh_installdocs -O--buildsystem=gradle dh_installchangelogs -O--buildsystem=gradle @@ -4161,12 +4199,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3490409/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/990198 and its subdirectories -I: Current time: Thu Feb 27 23:19:59 -12 2025 -I: pbuilder-time-stamp: 1740741599 +I: removing directory /srv/workspace/pbuilder/3490409 and its subdirectories +I: Current time: Fri Apr 3 07:48:04 +14 2026 +I: pbuilder-time-stamp: 1775152084